Wall clock time and date at job start Sun Mar 7 2021 00:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35451 * 125.56432 * 2 1 4 4 C 1.50696 * 126.06936 * 359.97438 * 3 2 1 5 5 O 1.42900 * 109.47354 * 149.97488 * 4 3 2 6 6 Si 1.86298 * 109.47048 * 29.97088 * 4 3 2 7 7 C 1.39841 * 107.86380 * 179.71966 * 3 2 1 8 8 C 1.50695 * 126.45929 * 180.26303 * 7 3 2 9 9 C 1.37872 * 107.08218 * 0.42121 * 7 3 2 10 10 C 1.46685 * 126.22857 * 179.84493 * 9 7 3 11 11 O 1.21690 * 120.00173 * 359.71325 * 10 9 7 12 12 N 1.34776 * 119.99719 * 179.71554 * 10 9 7 13 13 C 1.46504 * 119.99827 * 180.02562 * 12 10 9 14 14 H 1.08998 * 112.84774 * 23.79924 * 13 12 10 15 15 C 1.53782 * 113.61465 * 154.99989 * 13 12 10 16 16 C 1.53779 * 87.07984 * 89.19444 * 15 13 12 17 17 H 1.09002 * 113.61718 * 270.79575 * 16 15 13 18 18 C 1.50707 * 113.61258 * 139.98219 * 16 15 13 19 19 C 1.38443 * 119.98681 * 119.97619 * 18 16 15 20 20 F 1.35098 * 120.01594 * 0.04296 * 19 18 16 21 21 C 1.38447 * 119.97374 * 180.02562 * 19 18 16 22 22 C 1.38400 * 119.94665 * 359.97438 * 21 19 18 23 23 F 1.35101 * 120.00736 * 179.97438 * 22 21 19 24 24 C 1.38491 * 119.97385 * 359.72802 * 22 21 19 25 25 C 1.38182 * 120.02870 * 0.55324 * 24 22 21 26 26 C 1.53778 * 87.08326 * 25.43087 * 16 15 13 27 27 N 1.35534 * 125.56370 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47202 * 269.99601 * 1 2 3 29 29 H 1.08998 * 109.47150 * 30.00033 * 1 2 3 30 30 H 1.09003 * 109.47133 * 149.99998 * 1 2 3 31 31 H 1.09002 * 109.47050 * 269.97456 * 4 3 2 32 32 H 0.96705 * 113.99656 * 299.99639 * 5 4 3 33 33 H 1.48497 * 110.00077 * 58.68404 * 6 4 3 34 34 H 1.48504 * 110.00175 * 180.02562 * 6 4 3 35 35 H 1.08996 * 109.47785 * 270.21235 * 8 7 3 36 36 H 1.09008 * 109.46669 * 30.21094 * 8 7 3 37 37 H 1.08993 * 109.47191 * 150.20652 * 8 7 3 38 38 H 0.96999 * 120.00077 * 359.97438 * 12 10 9 39 39 H 1.09004 * 113.61192 * 334.64821 * 15 13 12 40 40 H 1.08998 * 113.68981 * 203.75399 * 15 13 12 41 41 H 1.08002 * 120.02422 * 179.97438 * 21 19 18 42 42 H 1.08008 * 119.98575 * 180.29093 * 24 22 21 43 43 H 1.08002 * 119.98029 * 179.72757 * 25 24 22 44 44 H 1.09003 * 113.61171 * 89.11487 * 26 16 15 45 45 H 1.08999 * 113.61471 * 220.01469 * 26 16 15 46 46 H 0.97005 * 125.67964 * 0.04562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 1.8200 2.5320 -0.0005 5 8 2.7767 3.3519 0.6737 6 14 0.1799 2.6422 0.8763 7 6 3.6270 0.6767 0.0065 8 6 4.8486 1.5590 0.0144 9 6 3.6122 -0.7020 0.0007 10 6 4.7860 -1.5816 0.0011 11 8 5.9049 -1.1031 0.0018 12 7 4.6253 -2.9197 0.0008 13 6 5.7977 -3.7983 0.0018 14 1 6.6871 -3.3167 0.4080 15 6 5.5243 -5.1897 0.5968 16 6 5.1298 -5.6324 -0.8221 17 1 4.0743 -5.4820 -1.0489 18 6 5.6142 -7.0139 -1.1800 19 6 4.7034 -8.0015 -1.5141 20 9 3.3806 -7.7269 -1.5201 21 6 5.1486 -9.2707 -1.8423 22 6 6.5040 -9.5503 -1.8365 23 9 6.9398 -10.7886 -2.1561 24 6 7.4136 -8.5590 -1.5081 25 6 6.9678 -7.2942 -1.1750 26 6 6.0398 -4.5067 -1.3415 27 7 2.2953 -1.1025 0.0005 28 1 -0.3634 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.7063 2.8767 -1.0284 32 1 2.9285 3.1020 1.5955 33 1 0.3143 2.1452 2.2691 34 1 -0.2996 4.0476 0.8821 35 1 5.1465 1.7765 -1.0112 36 1 4.6202 2.4910 0.5318 37 1 5.6625 1.0481 0.5286 38 1 3.7334 -3.3011 0.0006 39 1 4.6962 -5.2065 1.3054 40 1 6.4169 -5.6866 0.9769 41 1 4.4387 -10.0419 -2.1026 42 1 8.4717 -8.7758 -1.5081 43 1 7.6776 -6.5230 -0.9147 44 1 7.0742 -4.8159 -1.4918 45 1 5.6281 -3.9723 -2.1976 46 1 1.9834 -2.0211 0.0003 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13428180_12297754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:05:01 Heat of formation + Delta-G solvation = -61.612206 kcal Electronic energy + Delta-G solvation = -31878.397517 eV Core-core repulsion = 27178.983478 eV Total energy + Delta-G solvation = -4699.414039 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 363.143 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.11528 -50.03927 -42.71088 -41.52245 -40.00789 -38.69167 -37.84947 -34.80597 -33.66574 -33.07724 -32.00317 -31.53749 -29.35089 -27.68178 -26.96290 -26.54824 -25.87769 -24.38883 -23.18541 -22.56467 -20.86074 -20.59120 -20.19816 -19.52505 -19.26714 -18.30479 -17.56959 -17.50750 -17.08468 -16.98869 -16.74962 -16.66643 -16.49639 -16.37619 -15.92084 -15.84507 -15.56378 -15.37718 -15.25837 -15.02801 -14.63008 -14.36386 -14.17717 -14.04551 -14.01131 -13.87314 -13.69834 -13.67657 -13.56510 -13.24103 -13.19079 -12.93215 -12.69635 -12.49151 -12.26574 -12.23324 -11.90090 -11.77257 -11.50217 -11.05308 -10.46005 -10.27257 -10.19140 -9.69850 -9.50839 -9.00118 -4.81553 -0.22758 -0.15155 0.38738 1.20810 1.66115 1.67552 1.88239 1.97222 2.08588 2.15550 2.34962 2.73324 3.13066 3.30344 3.33810 3.41436 3.44815 3.49483 3.62061 3.66599 3.75173 3.77499 3.87397 3.96532 4.00957 4.01996 4.30011 4.39948 4.40955 4.48243 4.55980 4.60767 4.65074 4.67686 4.70886 4.72076 4.73778 4.78481 4.81659 4.89704 4.92228 4.93679 5.09673 5.14792 5.36492 5.40984 5.49201 5.60804 5.71515 5.93579 6.24846 6.40357 6.55376 7.12786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.067 3.933 3 C -0.210 4.210 4 C -0.034 4.034 5 O -0.527 6.527 6 Si 0.653 3.347 7 C -0.039 4.039 8 C -0.101 4.101 9 C -0.068 4.068 10 C 0.595 3.405 11 O -0.519 6.519 12 N -0.718 5.718 13 C 0.123 3.877 14 H 0.111 0.889 15 C -0.135 4.135 16 C -0.075 4.075 17 H 0.102 0.898 18 C -0.115 4.115 19 C 0.133 3.867 20 F -0.129 7.129 21 C -0.190 4.190 22 C 0.128 3.872 23 F -0.130 7.130 24 C -0.158 4.158 25 C -0.060 4.060 26 C -0.142 4.142 27 N -0.535 5.535 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.374 0.626 33 H -0.261 1.261 34 H -0.255 1.255 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.394 0.606 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.099 0.901 45 H 0.078 0.922 46 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.121 -3.182 0.249 5.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.051 4.051 3 C -0.217 4.217 4 C -0.144 4.144 5 O -0.334 6.334 6 Si 0.554 3.446 7 C -0.048 4.048 8 C -0.157 4.157 9 C -0.180 4.180 10 C 0.384 3.616 11 O -0.394 6.394 12 N -0.369 5.369 13 C 0.018 3.982 14 H 0.129 0.871 15 C -0.173 4.173 16 C -0.093 4.093 17 H 0.120 0.880 18 C -0.116 4.116 19 C 0.113 3.887 20 F -0.108 7.108 21 C -0.209 4.209 22 C 0.108 3.892 23 F -0.108 7.108 24 C -0.177 4.177 25 C -0.078 4.078 26 C -0.181 4.181 27 N -0.132 5.132 28 H 0.106 0.894 29 H 0.120 0.880 30 H 0.106 0.894 31 H 0.130 0.870 32 H 0.222 0.778 33 H -0.185 1.185 34 H -0.180 1.180 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.228 0.772 39 H 0.097 0.903 40 H 0.120 0.880 41 H 0.167 0.833 42 H 0.163 0.837 43 H 0.164 0.836 44 H 0.117 0.883 45 H 0.096 0.904 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -3.748 -2.408 0.341 4.468 hybrid contribution 0.120 -1.063 0.502 1.182 sum -3.628 -3.472 0.844 5.092 Atomic orbital electron populations 1.20424 0.87593 1.03724 1.04178 1.20159 0.93420 0.85751 1.05787 1.19550 0.92930 0.94851 1.14395 1.24247 1.01123 0.86794 1.02267 1.86555 1.61015 1.57054 1.28735 0.95555 0.82221 0.83704 0.83140 1.19806 0.94888 0.90646 0.99419 1.20566 0.93821 0.98587 1.02757 1.20065 0.82685 0.94084 1.21124 1.16998 0.87622 0.81052 0.75970 1.90846 1.24148 1.74819 1.49616 1.45548 1.09077 1.05636 1.76601 1.21815 0.89784 0.89755 0.96870 0.87113 1.23455 1.03228 0.94931 0.95655 1.21552 1.00556 0.89941 0.97280 0.88029 1.19789 0.93255 0.95448 1.03137 1.17133 0.77837 0.93015 1.00692 1.91521 1.31298 1.94074 1.93892 1.21085 0.95650 0.97501 1.06698 1.17342 0.91725 0.80632 0.99462 1.91563 1.90005 1.39258 1.89979 1.21266 1.00678 0.92816 1.02972 1.20782 0.94339 0.96159 0.96490 1.23590 1.00601 0.95710 0.98183 1.41741 1.05319 1.08224 1.57925 0.89375 0.87996 0.89398 0.86991 0.77790 1.18526 1.17982 0.91515 0.90011 0.90604 0.77235 0.90328 0.87959 0.83289 0.83701 0.83641 0.88301 0.90358 0.74696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.53 8.21 36.01 0.30 0.82 16 2 C 0.07 -0.10 6.84 -81.95 -0.56 -0.67 16 3 C -0.21 -0.16 5.38 -105.02 -0.57 -0.73 16 4 C -0.03 -0.01 3.03 36.00 0.11 0.10 16 5 O -0.53 -0.95 10.20 -35.23 -0.36 -1.30 16 6 Si 0.65 -0.64 26.76 -169.99 -4.55 -5.19 16 7 C -0.04 -0.10 6.15 -104.16 -0.64 -0.74 16 8 C -0.10 -0.32 9.51 36.00 0.34 0.02 16 9 C -0.07 -0.09 7.06 -81.98 -0.58 -0.67 16 10 C 0.59 1.22 7.79 -12.85 -0.10 1.12 16 11 O -0.52 -2.88 14.40 5.20 0.07 -2.81 16 12 N -0.72 1.01 5.26 -54.32 -0.29 0.73 16 13 C 0.12 -0.21 4.32 -67.12 -0.29 -0.50 16 14 H 0.11 -0.02 7.46 -51.93 -0.39 -0.41 16 15 C -0.13 0.43 7.29 -25.92 -0.19 0.24 16 16 C -0.07 0.20 3.78 -90.96 -0.34 -0.15 16 17 H 0.10 -0.27 7.44 -51.93 -0.39 -0.66 16 18 C -0.12 0.16 5.29 -104.54 -0.55 -0.39 16 19 C 0.13 0.00 7.24 -39.43 -0.29 -0.29 16 20 F -0.13 -0.09 16.36 2.25 0.04 -0.05 16 21 C -0.19 0.00 10.01 -39.44 -0.39 -0.40 16 22 C 0.13 0.03 7.30 -39.43 -0.29 -0.26 16 23 F -0.13 -0.21 17.27 2.25 0.04 -0.17 16 24 C -0.16 0.22 10.02 -39.51 -0.40 -0.17 16 25 C -0.06 0.14 8.61 -39.60 -0.34 -0.20 16 26 C -0.14 0.32 7.25 -25.92 -0.19 0.13 16 27 N -0.53 1.03 5.99 -5.69 -0.03 0.99 16 28 H 0.09 -0.49 7.13 -51.93 -0.37 -0.86 16 29 H 0.10 -0.64 5.17 -51.93 -0.27 -0.91 16 30 H 0.09 -0.60 8.14 -51.93 -0.42 -1.02 16 31 H 0.11 -0.02 7.96 -51.93 -0.41 -0.43 16 32 H 0.37 -0.19 8.46 45.56 0.39 0.19 16 33 H -0.26 -0.40 7.11 56.52 0.40 0.00 16 34 H -0.25 -0.64 7.11 56.52 0.40 -0.24 16 35 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.08 0.20 5.47 -51.92 -0.28 -0.08 16 37 H 0.08 0.33 6.49 -51.93 -0.34 -0.01 16 38 H 0.39 -1.58 7.83 -40.82 -0.32 -1.90 16 39 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 40 H 0.10 -0.39 7.72 -51.93 -0.40 -0.79 16 41 H 0.15 -0.15 8.06 -52.49 -0.42 -0.58 16 42 H 0.15 -0.44 8.06 -52.48 -0.42 -0.86 16 43 H 0.15 -0.64 6.65 -52.49 -0.35 -0.99 16 44 H 0.10 -0.31 6.31 -51.93 -0.33 -0.64 16 45 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 46 H 0.42 -2.16 8.19 -40.82 -0.33 -2.50 16 LS Contribution 376.53 15.07 5.67 5.67 Total: 0.00 -9.01 376.53 -9.90 -18.91 By element: Atomic # 1 Polarization: -8.52 SS G_CDS: -5.53 Total: -14.05 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -4.97 Total: -2.74 kcal Atomic # 7 Polarization: 2.04 SS G_CDS: -0.32 Total: 1.72 kcal Atomic # 8 Polarization: -3.83 SS G_CDS: -0.28 Total: -4.11 kcal Atomic # 9 Polarization: -0.29 SS G_CDS: 0.08 Total: -0.22 kcal Atomic # 14 Polarization: -0.64 SS G_CDS: -4.55 Total: -5.19 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -9.01 -9.90 -18.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_12297754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.706 kcal (2) G-P(sol) polarization free energy of solvation -9.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds