Wall clock time and date at job start Sun Mar 7 2021 00:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35659 * 117.00591 * 2 1 4 4 C 1.38402 * 120.11587 * 359.97438 * 3 2 1 5 5 C 1.38733 * 120.03037 * 179.97438 * 4 3 2 6 6 O 1.35708 * 119.86020 * 180.02562 * 5 4 3 7 7 C 1.42896 * 117.00261 * 359.97438 * 6 5 4 8 8 C 1.39138 * 120.27063 * 0.02562 * 5 4 3 9 9 C 1.50706 * 119.87525 * 179.97438 * 8 5 4 10 10 O 1.42893 * 109.47206 * 75.02520 * 9 8 5 11 11 Si 1.86308 * 109.46857 * 195.02597 * 9 8 5 12 12 C 1.37587 * 120.24581 * 0.02562 * 8 5 4 13 13 C 1.39820 * 119.95930 * 0.23215 * 12 8 5 14 14 C 1.47298 * 120.13138 * 179.74590 * 13 12 8 15 15 O 1.21616 * 120.00041 * 179.97438 * 14 13 12 16 16 N 1.34780 * 120.00089 * 359.97438 * 14 13 12 17 17 C 1.46504 * 119.99839 * 179.97438 * 16 14 13 18 18 H 1.09006 * 112.84988 * 23.80733 * 17 16 14 19 19 C 1.53777 * 113.61275 * 155.00091 * 17 16 14 20 20 C 1.53785 * 87.07910 * 89.11686 * 19 17 16 21 21 H 1.08995 * 113.61461 * 270.79712 * 20 19 17 22 22 C 1.50708 * 113.61220 * 139.98097 * 20 19 17 23 23 C 1.38445 * 119.98439 * 120.00031 * 22 20 19 24 24 F 1.35101 * 120.01693 * 0.02562 * 23 22 20 25 25 C 1.38445 * 119.97092 * 179.97438 * 23 22 20 26 26 C 1.38391 * 119.94941 * 0.02562 * 25 23 22 27 27 F 1.35104 * 120.01206 * 179.97438 * 26 25 23 28 28 C 1.38489 * 119.98048 * 359.97438 * 26 25 23 29 29 C 1.38197 * 120.02070 * 359.72882 * 28 26 25 30 30 C 1.53780 * 87.08318 * 25.43222 * 20 19 17 31 31 H 1.08996 * 109.47717 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47652 * 300.00767 * 1 2 3 33 33 H 1.09006 * 109.46892 * 59.99851 * 1 2 3 34 34 H 1.08002 * 119.98555 * 0.02562 * 4 3 2 35 35 H 1.09001 * 109.47014 * 299.99793 * 7 6 5 36 36 H 1.09002 * 109.47468 * 59.99979 * 7 6 5 37 37 H 1.09007 * 109.46968 * 179.97438 * 7 6 5 38 38 H 1.08992 * 109.47374 * 315.02182 * 9 8 5 39 39 H 0.96701 * 114.00227 * 300.00311 * 10 9 8 40 40 H 1.48500 * 109.99670 * 298.67887 * 11 9 8 41 41 H 1.48500 * 110.00171 * 60.00002 * 11 9 8 42 42 H 1.08002 * 120.01732 * 179.97438 * 12 8 5 43 43 H 0.96994 * 120.00310 * 0.02562 * 16 14 13 44 44 H 1.09002 * 113.61378 * 203.66362 * 19 17 16 45 45 H 1.08997 * 113.61643 * 334.57023 * 19 17 16 46 46 H 1.08003 * 120.02236 * 179.97438 * 25 23 22 47 47 H 1.08000 * 119.99308 * 180.02562 * 28 26 25 48 48 H 1.07992 * 119.97601 * 180.28910 * 29 28 26 49 49 H 1.08995 * 113.61683 * 220.02234 * 30 20 19 50 50 H 1.09000 * 113.61241 * 89.11235 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2936 2.3710 -0.0005 5 6 1.9254 3.6061 0.0000 6 8 1.1853 4.7436 0.0000 7 6 -0.2357 4.5931 -0.0011 8 6 3.3146 3.6833 0.0005 9 6 3.9917 5.0297 0.0005 10 8 3.8942 5.6119 1.3018 11 14 5.7865 4.8222 -0.4541 12 6 4.0725 2.5350 0.0000 13 6 3.4461 1.2849 -0.0060 14 6 4.2538 0.0532 -0.0122 15 8 3.7065 -1.0329 -0.0169 16 7 5.5995 0.1296 -0.0127 17 6 6.4028 -1.0955 -0.0183 18 1 5.8660 -1.9517 -0.4271 19 6 7.8081 -0.9079 -0.6138 20 6 8.2753 -0.5446 0.8056 21 1 8.1910 0.5177 1.0345 22 6 9.6242 -1.1147 1.1615 23 6 10.6667 -0.2677 1.4971 24 9 10.4748 1.0696 1.5061 25 6 11.9056 -0.7917 1.8245 26 6 12.1006 -2.1617 1.8154 27 9 13.3092 -2.6744 2.1342 28 6 11.0564 -3.0071 1.4794 29 6 9.8184 -2.4833 1.1587 30 6 7.0956 -1.3840 1.3240 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 0.2149 2.3165 -0.0005 35 1 -0.5422 4.0444 -0.8917 36 1 -0.5436 4.0435 0.8883 37 1 -0.7052 5.5769 -0.0006 38 1 3.5058 5.6807 -0.7261 39 1 2.9860 5.7492 1.6043 40 1 6.4678 3.9623 0.5468 41 1 5.9015 4.2175 -1.8055 42 1 5.1506 2.5992 0.0000 43 1 6.0360 0.9958 -0.0085 44 1 8.2472 -1.8297 -0.9955 45 1 7.8759 -0.0811 -1.3208 46 1 12.7195 -0.1316 2.0860 47 1 11.2082 -4.0764 1.4726 48 1 9.0034 -3.1434 0.9013 49 1 6.5882 -0.9415 2.1812 50 1 7.3400 -2.4359 1.4719 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_12297780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:05:04 Heat of formation + Delta-G solvation = -135.554238 kcal Electronic energy + Delta-G solvation = -38590.422007 eV Core-core repulsion = 33187.636987 eV Total energy + Delta-G solvation = -5402.785020 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.147 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -50.10654 -50.06120 -42.28419 -41.46452 -40.42748 -39.89926 -38.72586 -38.40112 -37.04535 -34.71101 -32.34974 -32.20832 -31.82760 -31.16052 -29.05233 -28.26325 -26.80039 -26.40645 -26.10365 -24.86014 -24.21453 -23.26332 -22.67356 -21.76407 -20.44039 -20.04693 -19.38060 -18.87373 -18.60437 -18.25126 -17.81451 -17.53095 -17.26934 -17.13767 -17.07572 -16.86370 -16.65903 -16.55805 -16.44056 -16.39791 -15.95619 -15.85979 -15.78423 -15.52910 -15.41309 -15.23982 -14.93567 -14.40359 -14.28269 -14.09142 -13.98020 -13.80302 -13.67435 -13.58707 -13.49446 -13.40090 -12.88302 -12.69711 -12.60227 -12.59436 -12.57789 -12.24606 -12.11175 -11.81270 -11.77559 -11.40654 -11.38375 -11.19559 -10.93052 -10.25634 -10.12052 -10.04755 -9.63266 -9.31675 -4.83811 -0.43063 -0.15652 -0.05887 -0.05814 1.34010 1.55387 1.65678 1.88572 1.93303 1.96841 2.06640 2.25176 2.45214 2.79590 3.23438 3.28710 3.39854 3.41185 3.44368 3.52484 3.61034 3.62816 3.63997 3.81381 3.89659 3.92617 3.95519 4.02310 4.04835 4.13386 4.15214 4.22839 4.23449 4.27865 4.36812 4.53218 4.57629 4.61424 4.65771 4.66629 4.67791 4.75229 4.79795 4.82824 4.85192 4.87960 4.90298 4.93884 5.04251 5.05317 5.13633 5.21479 5.50389 5.69804 5.90382 6.16342 6.33238 6.63341 7.06605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.303 6.303 3 C 0.219 3.781 4 C -0.304 4.304 5 C 0.212 3.788 6 O -0.311 6.311 7 C 0.011 3.989 8 C -0.200 4.200 9 C -0.075 4.075 10 O -0.546 6.546 11 Si 0.789 3.211 12 C -0.014 4.014 13 C -0.230 4.230 14 C 0.566 3.434 15 O -0.555 6.555 16 N -0.709 5.709 17 C 0.114 3.886 18 H 0.099 0.901 19 C -0.123 4.123 20 C -0.075 4.075 21 H 0.095 0.905 22 C -0.112 4.112 23 C 0.114 3.886 24 F -0.139 7.139 25 C -0.197 4.197 26 C 0.109 3.891 27 F -0.141 7.141 28 C -0.153 4.153 29 C -0.055 4.055 30 C -0.137 4.137 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.171 0.829 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.127 0.873 38 H 0.086 0.914 39 H 0.374 0.626 40 H -0.274 1.274 41 H -0.258 1.258 42 H 0.141 0.859 43 H 0.403 0.597 44 H 0.120 0.880 45 H 0.081 0.919 46 H 0.152 0.848 47 H 0.164 0.836 48 H 0.172 0.828 49 H 0.064 0.936 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.539 3.135 -2.106 5.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.214 6.214 3 C 0.169 3.831 4 C -0.323 4.323 5 C 0.164 3.836 6 O -0.223 6.223 7 C -0.083 4.083 8 C -0.201 4.201 9 C -0.183 4.183 10 O -0.353 6.353 11 Si 0.689 3.311 12 C -0.032 4.032 13 C -0.234 4.234 14 C 0.355 3.645 15 O -0.434 6.434 16 N -0.361 5.361 17 C 0.009 3.991 18 H 0.117 0.883 19 C -0.161 4.161 20 C -0.093 4.093 21 H 0.113 0.887 22 C -0.113 4.113 23 C 0.095 3.905 24 F -0.117 7.117 25 C -0.216 4.216 26 C 0.090 3.910 27 F -0.120 7.120 28 C -0.172 4.172 29 C -0.072 4.072 30 C -0.175 4.175 31 H 0.133 0.867 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.188 0.812 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.145 0.855 38 H 0.104 0.896 39 H 0.222 0.778 40 H -0.201 1.201 41 H -0.184 1.184 42 H 0.158 0.842 43 H 0.239 0.761 44 H 0.138 0.862 45 H 0.100 0.900 46 H 0.170 0.830 47 H 0.182 0.818 48 H 0.190 0.810 49 H 0.083 0.917 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.525 1.815 -2.358 4.613 hybrid contribution -1.476 0.025 0.522 1.566 sum -5.002 1.840 -1.836 5.637 Atomic orbital electron populations 1.23519 0.76197 1.05996 1.02805 1.86363 1.23479 1.25608 1.85920 1.18913 0.90697 0.85104 0.88375 1.21485 1.02252 0.90541 1.18004 1.18793 0.90293 0.85410 0.89107 1.86045 1.21515 1.28063 1.86644 1.23539 0.75588 1.06377 1.02753 1.19676 0.91133 0.97035 1.12244 1.25269 1.14428 0.89968 0.88668 1.86679 1.33013 1.83261 1.32298 0.92319 0.74240 0.87411 0.77150 1.20842 0.99282 0.90099 0.92997 1.19171 0.91374 0.93552 1.19322 1.18008 0.82348 0.88439 0.75696 1.90805 1.72109 1.29851 1.50599 1.45583 1.05253 1.09887 1.75382 1.21928 0.91529 0.87740 0.97879 0.88265 1.23452 0.92994 1.04407 0.95219 1.21518 0.89779 1.00106 0.97892 0.88723 1.19925 0.94854 0.94042 1.02512 1.17337 0.94006 0.77338 1.01821 1.91502 1.95608 1.30524 1.94089 1.21159 0.98369 0.95236 1.06843 1.17547 0.81496 0.91311 1.00663 1.91529 1.42786 1.87334 1.90309 1.21521 0.91981 1.01856 1.01793 1.21063 0.97211 0.93382 0.95555 1.23600 0.94858 1.01905 0.97170 0.86687 0.90870 0.90803 0.81151 0.91261 0.91117 0.85483 0.89574 0.77763 1.20082 1.18371 0.84197 0.76078 0.86180 0.90008 0.83018 0.81820 0.81045 0.91713 0.86537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.30 -2.67 8.56 -68.79 -0.59 -3.26 16 3 C 0.22 1.63 6.70 22.82 0.15 1.78 16 4 C -0.30 -0.51 8.01 22.43 0.18 -0.33 16 5 C 0.21 0.43 6.62 22.60 0.15 0.58 16 6 O -0.31 0.49 9.36 -90.29 -0.84 -0.36 16 7 C 0.01 -0.09 9.80 113.37 1.11 1.02 16 8 C -0.20 -0.76 5.28 -19.80 -0.10 -0.86 16 9 C -0.08 -0.09 2.32 71.24 0.17 0.08 16 10 O -0.55 -1.39 12.65 -148.98 -1.89 -3.28 16 11 Si 0.79 -0.67 30.39 68.60 2.09 1.42 16 12 C -0.01 -0.07 8.14 22.50 0.18 0.11 16 13 C -0.23 -1.98 5.89 -20.00 -0.12 -2.10 16 14 C 0.57 6.07 7.76 86.63 0.67 6.74 16 15 O -0.55 -9.70 14.75 16.88 0.25 -9.45 16 16 N -0.71 -3.03 5.21 -443.41 -2.31 -5.34 16 17 C 0.11 0.12 4.32 45.52 0.20 0.32 16 18 H 0.10 0.37 7.46 -2.38 -0.02 0.36 16 19 C -0.12 0.41 7.29 31.12 0.23 0.64 16 20 C -0.07 0.11 3.78 -11.01 -0.04 0.07 16 21 H 0.09 0.03 7.44 -2.39 -0.02 0.01 16 22 C -0.11 0.05 5.29 -19.81 -0.10 -0.05 16 23 C 0.11 0.35 7.24 22.37 0.16 0.51 16 24 F -0.14 -0.76 16.36 44.97 0.74 -0.03 16 25 C -0.20 -0.53 10.01 22.36 0.22 -0.31 16 26 C 0.11 0.25 7.30 22.37 0.16 0.41 16 27 F -0.14 -0.71 17.27 44.97 0.78 0.06 16 28 C -0.15 0.33 10.03 22.32 0.22 0.56 16 29 C -0.05 0.21 8.62 22.26 0.19 0.40 16 30 C -0.14 0.15 7.25 31.12 0.23 0.38 16 31 H 0.11 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H 0.07 -0.37 7.66 -2.39 -0.02 -0.39 16 33 H 0.07 -0.39 7.66 -2.38 -0.02 -0.40 16 34 H 0.17 -0.77 4.50 -2.91 -0.01 -0.78 16 35 H 0.07 -0.67 7.65 -2.39 -0.02 -0.69 16 36 H 0.07 -0.70 7.65 -2.39 -0.02 -0.72 16 37 H 0.13 -1.51 8.14 -2.38 -0.02 -1.53 16 38 H 0.09 -0.09 7.82 -2.39 -0.02 -0.11 16 39 H 0.37 -0.56 8.59 -74.06 -0.64 -1.20 16 40 H -0.27 -0.84 6.80 99.48 0.68 -0.16 16 41 H -0.26 -0.32 7.11 99.48 0.71 0.39 16 42 H 0.14 0.36 3.24 -2.91 -0.01 0.35 16 43 H 0.40 0.39 6.72 -92.71 -0.62 -0.23 16 44 H 0.12 -0.80 7.73 -2.39 -0.02 -0.81 16 45 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 46 H 0.15 0.16 8.06 -2.91 -0.02 0.13 16 47 H 0.16 -1.04 8.06 -2.91 -0.02 -1.06 16 48 H 0.17 -1.61 6.64 -2.91 -0.02 -1.63 16 49 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 50 H 0.12 -0.57 6.29 -2.39 -0.02 -0.59 16 Total: 0.00 -21.85 415.64 2.99 -18.87 By element: Atomic # 1 Polarization: -9.49 SS G_CDS: -0.20 Total: -9.69 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 4.97 Total: 11.05 kcal Atomic # 7 Polarization: -3.03 SS G_CDS: -2.31 Total: -5.34 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -3.07 Total: -16.34 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 1.51 Total: 0.04 kcal Atomic # 14 Polarization: -0.67 SS G_CDS: 2.09 Total: 1.42 kcal Total: -21.85 2.99 -18.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_12297780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.687 kcal (2) G-P(sol) polarization free energy of solvation -21.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds