Wall clock time and date at job start Sun Mar 7 2021 00:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86293 * 109.47346 * 2 1 4 4 C 1.50698 * 109.46978 * 120.00169 * 2 1 3 5 5 C 1.38418 * 119.89290 * 245.00171 * 4 2 1 6 6 C 1.38245 * 120.34221 * 179.97438 * 5 4 2 7 7 C 1.38280 * 120.11890 * 0.02562 * 6 5 4 8 8 F 1.35094 * 120.11200 * 179.97438 * 7 6 5 9 9 C 1.39861 * 119.77903 * 359.97438 * 7 6 5 10 10 C 1.47686 * 120.16731 * 179.97438 * 9 7 6 11 11 O 1.21570 * 120.00143 * 359.97438 * 10 9 7 12 12 N 1.34777 * 120.00109 * 179.97438 * 10 9 7 13 13 C 1.46506 * 119.99873 * 179.97438 * 12 10 9 14 14 H 1.09002 * 112.85053 * 23.81070 * 13 12 10 15 15 C 1.53781 * 113.61132 * 155.00131 * 13 12 10 16 16 C 1.53785 * 87.08168 * 89.11771 * 15 13 12 17 17 H 1.09005 * 113.61450 * 270.88472 * 16 15 13 18 18 C 1.50699 * 113.61667 * 140.06126 * 16 15 13 19 19 C 1.38456 * 119.98542 * 119.72620 * 18 16 15 20 20 F 1.35099 * 120.01314 * 0.02562 * 19 18 16 21 21 C 1.38438 * 119.97090 * 179.70664 * 19 18 16 22 22 C 1.38395 * 119.95329 * 0.54754 * 21 19 18 23 23 F 1.35097 * 120.01353 * 179.72767 * 22 21 19 24 24 C 1.38501 * 119.97319 * 359.74741 * 22 21 19 25 25 C 1.38193 * 120.02397 * 359.97438 * 24 22 21 26 26 C 1.53782 * 113.61543 * 252.49944 * 13 12 10 27 27 C 1.37900 * 119.89569 * 65.25255 * 4 2 1 28 28 H 0.96702 * 113.99732 * 59.99928 * 1 2 3 29 29 H 1.09003 * 109.46909 * 239.99496 * 2 1 3 30 30 H 1.48506 * 110.00216 * 59.99985 * 3 2 1 31 31 H 1.48501 * 110.00224 * 181.32041 * 3 2 1 32 32 H 1.08004 * 119.82300 * 359.97019 * 5 4 2 33 33 H 1.08003 * 119.93990 * 179.97438 * 6 5 4 34 34 H 0.96995 * 120.00018 * 0.27596 * 12 10 9 35 35 H 1.09001 * 113.61611 * 203.66335 * 15 13 12 36 36 H 1.08999 * 113.61739 * 334.57290 * 15 13 12 37 37 H 1.08001 * 120.02346 * 180.29495 * 21 19 18 38 38 H 1.07994 * 119.98983 * 179.97438 * 24 22 21 39 39 H 1.07994 * 119.97215 * 180.02562 * 25 24 22 40 40 H 1.09002 * 113.61503 * 25.43252 * 26 13 12 41 41 H 1.08994 * 113.61294 * 156.33804 * 26 13 12 42 42 H 1.08004 * 120.05931 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6393 -0.0093 2.1911 6 6 3.1040 -0.6516 3.3237 7 6 2.8640 -2.0015 3.5036 8 9 3.3186 -2.6291 4.6101 9 6 2.1491 -2.7149 2.5360 10 6 1.8884 -4.1569 2.7191 11 8 2.2959 -4.7270 3.7125 12 7 1.1987 -4.8410 1.7849 13 6 0.9405 -6.2717 1.9663 14 1 0.9691 -6.5777 3.0121 15 6 -0.3014 -6.7741 1.2112 16 6 0.6295 -7.0393 0.0161 17 1 0.7365 -6.1847 -0.6520 18 6 0.3217 -8.3198 -0.7163 19 6 -0.0290 -8.2840 -2.0553 20 9 -0.0948 -7.1014 -2.7052 21 6 -0.3058 -9.4610 -2.7294 22 6 -0.2426 -10.6713 -2.0612 23 9 -0.5178 -11.8202 -2.7165 24 6 0.1025 -10.7042 -0.7203 25 6 0.3841 -9.5291 -0.0497 26 6 1.7726 -7.1706 1.0365 27 6 1.6885 -2.0581 1.3932 28 1 -0.3933 0.4417 -0.7651 29 1 1.7923 -0.5139 -0.8900 30 1 1.5616 2.4679 1.2085 31 1 3.5346 1.7702 -0.0322 32 1 2.8298 1.0451 2.0551 33 1 3.6561 -0.0982 4.0690 34 1 0.8770 -4.3871 0.9904 35 1 -0.7344 -7.6795 1.6366 36 1 -1.0423 -5.9971 1.0235 37 1 -0.5748 -9.4345 -3.7751 38 1 0.1514 -11.6485 -0.1985 39 1 0.6535 -9.5558 0.9957 40 1 2.7059 -6.7135 0.7076 41 1 1.9065 -8.1842 1.4141 42 1 1.1397 -2.6038 0.6399 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_12335834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:05:10 Heat of formation + Delta-G solvation = -108.532267 kcal Electronic energy + Delta-G solvation = -31506.740985 eV Core-core repulsion = 26584.113373 eV Total energy + Delta-G solvation = -4922.627613 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.107 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -50.14534 -50.06859 -50.04370 -41.81361 -40.83003 -39.87849 -38.69680 -37.44258 -34.91534 -32.90078 -32.50996 -31.85345 -31.29113 -26.75943 -26.69405 -26.53742 -25.44522 -24.29010 -23.42487 -22.68397 -21.72672 -20.35171 -19.40988 -19.17199 -18.64930 -18.32554 -18.19242 -17.85289 -17.30435 -17.05663 -17.00408 -16.86692 -16.60582 -16.40787 -16.37020 -16.00706 -15.95602 -15.52941 -15.46174 -15.22360 -15.16974 -14.64522 -14.52754 -14.16923 -14.02057 -13.96547 -13.78500 -13.57219 -13.50642 -13.41380 -12.86780 -12.71273 -12.55527 -12.47567 -12.08097 -11.99622 -11.77221 -11.35143 -11.25527 -10.56220 -10.35830 -10.20397 -10.09241 -9.92036 -9.60197 -4.91333 -0.66915 -0.18227 -0.13064 -0.03354 1.30105 1.46224 1.68342 1.82971 1.97820 2.27493 2.32469 2.82122 2.88214 3.22923 3.25496 3.27596 3.42078 3.44446 3.47968 3.61824 3.65793 3.66968 3.84786 3.88010 3.92440 4.04559 4.06286 4.16000 4.23544 4.47663 4.54787 4.63659 4.65416 4.69441 4.71996 4.74500 4.80347 4.83838 4.87999 4.90756 4.98159 4.99749 5.06650 5.07803 5.22794 5.41744 5.50450 5.72348 6.27560 6.92837 6.96320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.073 4.073 3 Si 0.764 3.236 4 C -0.100 4.100 5 C -0.074 4.074 6 C -0.154 4.154 7 C 0.136 3.864 8 F -0.132 7.132 9 C -0.183 4.183 10 C 0.561 3.439 11 O -0.565 6.565 12 N -0.691 5.691 13 C 0.111 3.889 14 H 0.094 0.906 15 C -0.122 4.122 16 C -0.070 4.070 17 H 0.106 0.894 18 C -0.112 4.112 19 C 0.118 3.882 20 F -0.136 7.136 21 C -0.198 4.198 22 C 0.107 3.893 23 F -0.142 7.142 24 C -0.155 4.155 25 C -0.056 4.056 26 C -0.138 4.138 27 C -0.020 4.020 28 H 0.407 0.593 29 H 0.108 0.892 30 H -0.294 1.294 31 H -0.286 1.286 32 H 0.141 0.859 33 H 0.163 0.837 34 H 0.414 0.586 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.152 0.848 38 H 0.161 0.839 39 H 0.170 0.830 40 H 0.068 0.932 41 H 0.111 0.889 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.388 3.546 -6.245 7.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.183 4.183 3 Si 0.670 3.330 4 C -0.100 4.100 5 C -0.092 4.092 6 C -0.173 4.173 7 C 0.116 3.884 8 F -0.110 7.110 9 C -0.187 4.187 10 C 0.348 3.652 11 O -0.445 6.445 12 N -0.343 5.343 13 C 0.006 3.994 14 H 0.112 0.888 15 C -0.160 4.160 16 C -0.088 4.088 17 H 0.124 0.876 18 C -0.113 4.113 19 C 0.099 3.901 20 F -0.114 7.114 21 C -0.217 4.217 22 C 0.088 3.912 23 F -0.121 7.121 24 C -0.174 4.174 25 C -0.074 4.074 26 C -0.176 4.176 27 C -0.039 4.039 28 H 0.259 0.741 29 H 0.126 0.874 30 H -0.221 1.221 31 H -0.213 1.213 32 H 0.158 0.842 33 H 0.181 0.819 34 H 0.253 0.747 35 H 0.133 0.867 36 H 0.105 0.895 37 H 0.170 0.830 38 H 0.179 0.821 39 H 0.187 0.813 40 H 0.087 0.913 41 H 0.130 0.870 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.557 3.379 -4.611 5.925 hybrid contribution 0.140 -0.432 -0.134 0.474 sum -1.417 2.947 -4.745 5.762 Atomic orbital electron populations 1.86436 1.16607 1.82417 1.51695 1.24704 0.86362 1.10661 0.96607 0.94109 0.77727 0.75868 0.85302 1.19732 0.99325 0.94108 0.96878 1.21203 0.95635 0.99889 0.92440 1.21279 1.03471 0.92058 1.00479 1.18059 0.95686 0.91273 0.83428 1.91565 1.86313 1.82723 1.50384 1.20127 1.06245 0.94294 0.98077 1.18134 0.77995 0.86190 0.82852 1.90843 1.52303 1.70796 1.30535 1.45438 1.55614 1.09895 1.23393 1.21957 0.97473 0.79389 1.00543 0.88816 1.23432 0.95592 1.03098 0.93837 1.21540 0.97612 0.94417 0.95276 0.87620 1.19940 1.02324 0.97248 0.91755 1.17278 1.01686 0.80508 0.90645 1.91502 1.93850 1.44634 1.81430 1.21169 1.07074 0.90731 1.02747 1.17571 1.01060 0.81114 0.91451 1.91525 1.91270 1.47862 1.81438 1.21512 1.01989 1.01624 0.92290 1.21062 0.95595 0.89228 1.01504 1.23596 0.97226 1.01439 0.95362 1.21273 0.94179 0.93809 0.94600 0.74123 0.87406 1.22140 1.21298 0.84201 0.81923 0.74710 0.86734 0.89450 0.83046 0.82131 0.81250 0.91279 0.87048 0.81402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 3.70 12.81 -148.98 -1.91 1.79 16 2 C -0.07 0.50 2.79 71.24 0.20 0.70 16 3 Si 0.76 -5.10 29.84 68.60 2.05 -3.05 16 4 C -0.10 0.08 5.38 -19.90 -0.11 -0.03 16 5 C -0.07 -0.08 8.66 22.31 0.19 0.11 16 6 C -0.15 -0.50 10.01 22.28 0.22 -0.27 16 7 C 0.14 1.11 7.29 22.67 0.17 1.27 16 8 F -0.13 -1.83 15.55 44.97 0.70 -1.13 16 9 C -0.18 -0.96 5.88 -20.05 -0.12 -1.07 16 10 C 0.56 4.11 7.77 86.74 0.67 4.78 16 11 O -0.57 -9.20 14.94 -3.94 -0.06 -9.26 16 12 N -0.69 0.62 5.21 -443.04 -2.31 -1.69 16 13 C 0.11 -0.25 4.32 45.52 0.20 -0.05 16 14 H 0.09 0.17 7.46 -2.39 -0.02 0.15 16 15 C -0.12 0.82 7.29 31.12 0.23 1.04 16 16 C -0.07 0.39 3.77 -11.01 -0.04 0.35 16 17 H 0.11 -0.61 7.45 -2.38 -0.02 -0.62 16 18 C -0.11 0.36 5.30 -19.82 -0.10 0.26 16 19 C 0.12 0.02 7.24 22.37 0.16 0.18 16 20 F -0.14 -0.23 16.36 44.97 0.74 0.51 16 21 C -0.20 -0.15 10.01 22.35 0.22 0.08 16 22 C 0.11 0.11 7.30 22.37 0.16 0.27 16 23 F -0.14 -0.59 17.27 44.97 0.78 0.19 16 24 C -0.16 0.51 10.03 22.32 0.22 0.73 16 25 C -0.06 0.31 8.61 22.26 0.19 0.50 16 26 C -0.14 0.60 7.26 31.12 0.23 0.83 16 27 C -0.02 0.02 9.17 22.52 0.21 0.23 16 28 H 0.41 -6.71 8.74 -74.06 -0.65 -7.35 16 29 H 0.11 -1.29 7.96 -2.39 -0.02 -1.31 16 30 H -0.29 -0.26 7.05 99.48 0.70 0.44 16 31 H -0.29 0.30 7.11 99.48 0.71 1.01 16 32 H 0.14 -0.13 4.84 -2.91 -0.01 -0.14 16 33 H 0.16 -0.11 8.06 -2.91 -0.02 -0.13 16 34 H 0.41 -2.79 6.73 -92.71 -0.62 -3.41 16 35 H 0.11 -0.99 7.72 -2.39 -0.02 -1.01 16 36 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 37 H 0.15 -0.13 8.06 -2.91 -0.02 -0.15 16 38 H 0.16 -1.11 8.06 -2.91 -0.02 -1.14 16 39 H 0.17 -1.81 6.66 -2.91 -0.02 -1.82 16 40 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.11 -0.77 6.32 -2.39 -0.02 -0.78 16 42 H 0.17 -1.28 6.40 -2.91 -0.02 -1.29 16 Total: 0.00 -23.90 364.96 2.77 -21.13 By element: Atomic # 1 Polarization: -18.27 SS G_CDS: -0.11 Total: -18.39 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 2.90 Total: 9.90 kcal Atomic # 7 Polarization: 0.62 SS G_CDS: -2.31 Total: -1.69 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -1.97 Total: -7.46 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 2.21 Total: -0.43 kcal Atomic # 14 Polarization: -5.10 SS G_CDS: 2.05 Total: -3.05 kcal Total: -23.90 2.77 -21.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_12335834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.399 kcal (2) G-P(sol) polarization free energy of solvation -23.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds