Wall clock time and date at job start Sun Mar 7 2021 00:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86305 * 109.46917 * 2 1 4 4 C 1.50697 * 109.46915 * 120.00327 * 2 1 3 5 5 C 1.34456 * 126.47697 * 255.02361 * 4 2 1 6 6 N 1.36563 * 109.98126 * 179.97438 * 5 4 2 7 7 C 1.37823 * 109.86264 * 0.02562 * 6 5 4 8 8 C 1.38648 * 133.38016 * 180.02562 * 7 6 5 9 9 C 1.39322 * 119.66601 * 179.97438 * 8 7 6 10 10 C 1.47579 * 119.83115 * 179.97438 * 9 8 7 11 11 O 1.21595 * 119.99870 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00183 * 180.02562 * 10 9 8 13 13 C 1.46506 * 120.00033 * 180.02562 * 12 10 9 14 14 H 1.08992 * 112.90684 * 336.24748 * 13 12 10 15 15 C 1.54049 * 113.61276 * 107.61836 * 13 12 10 16 16 C 1.53781 * 87.08031 * 89.07129 * 15 13 12 17 17 H 1.09003 * 113.69043 * 270.86777 * 16 15 13 18 18 C 1.50698 * 113.61565 * 139.97986 * 16 15 13 19 19 C 1.38449 * 119.98847 * 142.50394 * 18 16 15 20 20 F 1.35095 * 120.01181 * 359.95283 * 19 18 16 21 21 C 1.38442 * 119.97212 * 179.97438 * 19 18 16 22 22 C 1.38400 * 119.95068 * 0.02562 * 21 19 18 23 23 F 1.35099 * 120.01137 * 179.97438 * 22 21 19 24 24 C 1.38490 * 119.97575 * 359.97438 * 22 21 19 25 25 C 1.38192 * 120.02317 * 359.74212 * 24 22 21 26 26 C 1.53781 * 87.08070 * 25.42738 * 16 15 13 27 27 C 1.40194 * 120.33733 * 0.24985 * 9 8 7 28 28 C 1.36241 * 120.37550 * 359.48092 * 27 9 8 29 29 C 1.39875 * 119.96074 * 0.52068 * 28 27 9 30 30 H 0.96694 * 114.00086 * 299.99422 * 1 2 3 31 31 H 1.09006 * 109.47018 * 240.00369 * 2 1 3 32 32 H 1.48493 * 109.99738 * 178.68044 * 3 2 1 33 33 H 1.48499 * 110.00156 * 300.00182 * 3 2 1 34 34 H 1.08003 * 125.01133 * 359.94390 * 5 4 2 35 35 H 0.97005 * 125.06968 * 180.02562 * 6 5 4 36 36 H 1.08006 * 120.16629 * 359.96963 * 8 7 6 37 37 H 0.97002 * 120.00078 * 359.97438 * 12 10 9 38 38 H 1.09005 * 113.62125 * 334.52173 * 15 13 12 39 39 H 1.08996 * 113.68970 * 203.62749 * 15 13 12 40 40 H 1.08000 * 120.02560 * 179.97438 * 21 19 18 41 41 H 1.07996 * 119.99021 * 180.02562 * 24 22 21 42 42 H 1.08003 * 119.97006 * 180.25544 * 25 24 22 43 43 H 1.09002 * 113.61445 * 89.11830 * 26 16 15 44 44 H 1.09002 * 113.61408 * 219.93560 * 26 16 15 45 45 H 1.07998 * 119.81424 * 179.74377 * 27 9 8 46 46 H 1.08001 * 120.01320 * 180.27668 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 2.4612 -0.1363 2.3247 6 7 2.8026 -1.0947 3.2356 7 6 2.4945 -2.3431 2.7397 8 6 2.6305 -3.6279 3.2429 9 6 2.2131 -4.7155 2.4787 10 6 2.3567 -6.0846 3.0106 11 8 2.8387 -6.2612 4.1129 12 7 1.9545 -7.1393 2.2741 13 6 2.0966 -8.4984 2.8023 14 1 2.8742 -8.5793 3.5618 15 6 0.7595 -9.1432 3.2141 16 6 0.6527 -9.6577 1.7689 17 1 0.1530 -8.9639 1.0928 18 6 0.1173 -11.0626 1.6662 19 6 -0.7327 -11.4051 0.6284 20 9 -1.0829 -10.4798 -0.2916 21 6 -1.2239 -12.6960 0.5340 22 6 -0.8650 -13.6425 1.4778 23 9 -1.3440 -14.9025 1.3872 24 6 -0.0146 -13.2977 2.5150 25 6 0.4798 -12.0103 2.6049 26 6 2.1873 -9.5773 1.7102 27 6 1.6628 -4.5164 1.2048 28 6 1.5205 -3.2570 0.7050 29 6 1.9349 -2.1548 1.4600 30 1 -0.3933 0.4416 0.7650 31 1 1.7924 -0.5138 -0.8901 32 1 3.5345 1.7703 0.0321 33 1 1.5614 2.4680 -1.2084 34 1 2.5972 0.9262 2.4627 35 1 3.2023 -0.9225 4.1026 36 1 3.0579 -3.7847 4.2223 37 1 1.5704 -6.9985 1.3946 38 1 -0.0116 -8.4193 3.4780 39 1 0.8655 -9.9371 3.9534 40 1 -1.8873 -12.9640 -0.2749 41 1 0.2659 -14.0362 3.2514 42 1 1.1462 -11.7434 3.4118 43 1 2.6852 -10.4898 2.0383 44 1 2.5691 -9.2052 0.7595 45 1 1.3458 -5.3658 0.6180 46 1 1.0917 -3.1100 -0.2753 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_12335838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:05:18 Heat of formation + Delta-G solvation = -36.752259 kcal Electronic energy + Delta-G solvation = -33412.728252 eV Core-core repulsion = 28485.251419 eV Total energy + Delta-G solvation = -4927.476833 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.128 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -50.07932 -50.04809 -42.46206 -41.56073 -40.33977 -38.79033 -37.83715 -37.42717 -34.66766 -33.23988 -31.94490 -31.61036 -30.71943 -30.37204 -26.72376 -26.61097 -26.25104 -24.83379 -24.11760 -23.65053 -22.83914 -21.64582 -20.78654 -20.28110 -19.48890 -19.28441 -18.41585 -18.17550 -17.58562 -17.41962 -17.05502 -16.96291 -16.88172 -16.63884 -16.38065 -16.22378 -15.99833 -15.88336 -15.54717 -15.50569 -15.24457 -15.09275 -15.05248 -14.75161 -14.70875 -14.34796 -14.01500 -13.99291 -13.75921 -13.56038 -13.44675 -13.08437 -12.87667 -12.63138 -12.56305 -12.28631 -12.27797 -12.05622 -11.92599 -11.73621 -11.32473 -11.13865 -10.78293 -10.29159 -10.17945 -10.08642 -9.60138 -9.36450 -8.78600 -4.97122 -0.32719 -0.12982 -0.03662 0.36281 1.39049 1.42296 1.71617 1.89286 1.89955 2.05947 2.25035 2.27881 2.81963 2.85573 3.29471 3.44345 3.48366 3.57955 3.63101 3.66449 3.67123 3.74375 3.86664 3.89562 3.92868 3.93727 4.07159 4.11222 4.17558 4.30578 4.49315 4.51369 4.58724 4.60575 4.70037 4.73842 4.77176 4.82953 4.85563 4.90328 4.91066 4.96256 5.00552 5.07650 5.10892 5.20530 5.25992 5.40967 5.48382 5.58509 5.61695 5.72325 5.97954 6.43611 6.55630 6.90975 7.11549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.040 4.040 3 Si 0.795 3.205 4 C -0.236 4.236 5 C 0.097 3.903 6 N -0.576 5.576 7 C 0.066 3.934 8 C -0.065 4.065 9 C -0.138 4.138 10 C 0.566 3.434 11 O -0.578 6.578 12 N -0.697 5.697 13 C 0.114 3.886 14 H 0.096 0.904 15 C -0.138 4.138 16 C -0.073 4.073 17 H 0.101 0.899 18 C -0.111 4.111 19 C 0.115 3.885 20 F -0.138 7.138 21 C -0.199 4.199 22 C 0.107 3.893 23 F -0.142 7.142 24 C -0.154 4.154 25 C -0.055 4.055 26 C -0.123 4.123 27 C -0.108 4.108 28 C -0.088 4.088 29 C -0.082 4.082 30 H 0.393 0.607 31 H 0.095 0.905 32 H -0.285 1.285 33 H -0.306 1.306 34 H 0.220 0.780 35 H 0.435 0.565 36 H 0.131 0.869 37 H 0.413 0.587 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.150 0.850 41 H 0.163 0.837 42 H 0.172 0.828 43 H 0.115 0.885 44 H 0.084 0.916 45 H 0.149 0.851 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.149 4.090 2.450 4.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.149 4.149 3 Si 0.700 3.300 4 C -0.243 4.243 5 C -0.032 4.032 6 N -0.180 5.180 7 C -0.041 4.041 8 C -0.086 4.086 9 C -0.142 4.142 10 C 0.355 3.645 11 O -0.459 6.459 12 N -0.349 5.349 13 C 0.008 3.992 14 H 0.114 0.886 15 C -0.176 4.176 16 C -0.091 4.091 17 H 0.120 0.880 18 C -0.112 4.112 19 C 0.096 3.904 20 F -0.116 7.116 21 C -0.218 4.218 22 C 0.088 3.912 23 F -0.121 7.121 24 C -0.173 4.173 25 C -0.073 4.073 26 C -0.161 4.161 27 C -0.128 4.128 28 C -0.106 4.106 29 C -0.087 4.087 30 H 0.243 0.757 31 H 0.113 0.887 32 H -0.211 1.211 33 H -0.234 1.234 34 H 0.236 0.764 35 H 0.276 0.724 36 H 0.149 0.851 37 H 0.251 0.749 38 H 0.086 0.914 39 H 0.130 0.870 40 H 0.168 0.832 41 H 0.180 0.820 42 H 0.190 0.810 43 H 0.133 0.867 44 H 0.103 0.897 45 H 0.166 0.834 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.075 4.239 2.344 5.270 hybrid contribution -0.373 -0.843 -0.747 1.186 sum 1.703 3.396 1.598 4.121 Atomic orbital electron populations 1.86463 1.17910 1.82318 1.50265 1.24547 0.84606 1.10223 0.95546 0.94068 0.77097 0.73560 0.85258 1.20852 1.12644 0.91514 0.99327 1.22365 0.97064 0.95810 0.87967 1.41814 1.54091 1.03209 1.18857 1.18118 1.03870 0.86950 0.95114 1.20150 0.99598 0.88745 1.00097 1.19451 1.06328 0.91894 0.96572 1.18313 0.76710 0.85280 0.84175 1.90764 1.46574 1.86705 1.21835 1.45507 1.63195 1.05130 1.21052 1.21956 0.98779 0.80620 0.97796 0.88555 1.23640 0.97295 1.00760 0.95901 1.21537 0.96901 0.91691 0.98962 0.88035 1.19966 0.98477 0.97829 0.94955 1.17319 0.98126 0.85943 0.89003 1.91500 1.90643 1.64819 1.64658 1.21164 1.05551 0.92472 1.02621 1.17566 0.97445 0.79280 0.96922 1.91524 1.86768 1.37768 1.96026 1.21520 0.98250 0.99010 0.98513 1.21078 0.97803 0.90413 0.97991 1.23429 0.94126 0.99121 0.99392 1.20877 0.99730 0.97986 0.94182 1.20389 0.99263 0.90850 1.00115 1.19574 1.00906 0.94280 0.93947 0.75716 0.88705 1.21141 1.23433 0.76415 0.72411 0.85110 0.74917 0.91428 0.86960 0.83195 0.81972 0.81023 0.86699 0.89733 0.83379 0.84743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.05 12.88 -148.98 -1.92 -1.97 16 2 C -0.04 0.05 3.06 71.24 0.22 0.27 16 3 Si 0.79 -3.91 30.75 68.60 2.11 -1.80 16 4 C -0.24 0.15 5.57 -18.65 -0.10 0.05 16 5 C 0.10 -0.59 10.43 83.09 0.87 0.28 16 6 N -0.58 2.30 6.07 -187.71 -1.14 1.17 16 7 C 0.07 0.18 7.26 38.96 0.28 0.47 16 8 C -0.06 -0.32 9.61 22.63 0.22 -0.11 16 9 C -0.14 -0.65 5.87 -20.08 -0.12 -0.76 16 10 C 0.57 3.55 7.76 86.71 0.67 4.22 16 11 O -0.58 -7.87 15.91 -4.02 -0.06 -7.94 16 12 N -0.70 0.29 5.21 -442.71 -2.31 -2.02 16 13 C 0.11 -0.24 4.34 45.61 0.20 -0.04 16 14 H 0.10 0.11 7.46 -2.39 -0.02 0.09 16 15 C -0.14 0.53 7.26 31.21 0.23 0.75 16 16 C -0.07 0.31 3.78 -11.01 -0.04 0.27 16 17 H 0.10 -0.36 7.44 -2.39 -0.02 -0.38 16 18 C -0.11 0.24 5.30 -19.82 -0.10 0.14 16 19 C 0.12 0.19 7.24 22.37 0.16 0.35 16 20 F -0.14 -0.51 16.36 44.97 0.74 0.22 16 21 C -0.20 -0.39 10.01 22.36 0.22 -0.16 16 22 C 0.11 0.19 7.30 22.37 0.16 0.35 16 23 F -0.14 -0.68 17.27 44.97 0.78 0.10 16 24 C -0.15 0.44 10.03 22.32 0.22 0.66 16 25 C -0.06 0.28 8.59 22.26 0.19 0.47 16 26 C -0.12 0.73 7.28 31.12 0.23 0.96 16 27 C -0.11 -0.12 9.46 22.28 0.21 0.09 16 28 C -0.09 -0.26 10.03 22.20 0.22 -0.03 16 29 C -0.08 -0.31 6.35 -20.14 -0.13 -0.44 16 30 H 0.39 -3.26 8.70 -74.06 -0.64 -3.91 16 31 H 0.10 0.12 7.96 -2.38 -0.02 0.10 16 32 H -0.28 0.04 7.11 99.48 0.71 0.75 16 33 H -0.31 -1.15 7.11 99.48 0.71 -0.45 16 34 H 0.22 -3.31 6.35 -2.91 -0.02 -3.33 16 35 H 0.44 -4.24 8.96 -92.70 -0.83 -5.07 16 36 H 0.13 0.67 7.62 -2.91 -0.02 0.65 16 37 H 0.41 -2.10 6.69 -92.71 -0.62 -2.72 16 38 H 0.07 -0.07 8.14 -2.38 -0.02 -0.09 16 39 H 0.11 -0.76 6.32 -2.39 -0.02 -0.78 16 40 H 0.15 0.08 8.06 -2.91 -0.02 0.06 16 41 H 0.16 -1.10 8.06 -2.91 -0.02 -1.13 16 42 H 0.17 -1.82 6.67 -2.91 -0.02 -1.84 16 43 H 0.11 -0.95 7.71 -2.39 -0.02 -0.97 16 44 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 45 H 0.15 -0.73 6.36 -2.91 -0.02 -0.75 16 46 H 0.13 0.15 8.06 -2.91 -0.02 0.12 16 Total: 0.00 -25.68 393.91 1.05 -24.63 By element: Atomic # 1 Polarization: -19.22 SS G_CDS: -0.96 Total: -20.18 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 3.81 Total: 7.78 kcal Atomic # 7 Polarization: 2.60 SS G_CDS: -3.45 Total: -0.85 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -1.98 Total: -9.90 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 1.51 Total: 0.32 kcal Atomic # 14 Polarization: -3.91 SS G_CDS: 2.11 Total: -1.80 kcal Total: -25.68 1.05 -24.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_12335838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.120 kcal (2) G-P(sol) polarization free energy of solvation -25.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds