Wall clock time and date at job start Sun Mar 7 2021 00:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86307 * 109.47006 * 2 1 4 4 C 1.50694 * 109.47082 * 119.99999 * 2 1 3 5 5 C 1.37939 * 119.92452 * 65.26173 * 4 2 1 6 6 C 1.39601 * 119.87510 * 180.25595 * 5 4 2 7 7 C 1.47849 * 120.13801 * 179.76902 * 6 5 4 8 8 O 1.21550 * 119.99957 * 359.71323 * 7 6 5 9 9 N 1.34781 * 119.99616 * 179.72419 * 7 6 5 10 10 C 1.46501 * 119.99552 * 179.97438 * 9 7 6 11 11 H 1.08993 * 112.91182 * 336.24587 * 10 9 7 12 12 C 1.53778 * 113.61560 * 107.49938 * 10 9 7 13 13 C 1.53778 * 87.08449 * 89.11214 * 12 10 9 14 14 H 1.09004 * 113.69215 * 270.87947 * 13 12 10 15 15 C 1.50694 * 113.61739 * 139.98049 * 13 12 10 16 16 C 1.38186 * 119.98852 * 322.50353 * 15 13 12 17 17 C 1.38231 * 120.05649 * 179.97438 * 16 15 13 18 18 C 1.38458 * 120.02186 * 0.02660 * 17 16 15 19 19 F 1.35090 * 120.01183 * 179.97438 * 18 17 16 20 20 C 1.38446 * 119.97285 * 0.02562 * 18 17 16 21 21 C 1.38398 * 119.94880 * 359.71836 * 20 18 17 22 22 F 1.35097 * 120.01078 * 180.27523 * 21 20 18 23 23 C 1.53784 * 113.61123 * 204.99529 * 10 9 7 24 24 C 1.39544 * 119.72246 * 359.48504 * 6 5 4 25 25 C 1.38077 * 119.83718 * 0.25691 * 24 6 5 26 26 Br 1.89095 * 119.93453 * 179.97438 * 25 24 6 27 27 C 1.38371 * 119.92283 * 244.99967 * 4 2 1 28 28 H 0.96704 * 113.99637 * 60.00450 * 1 2 3 29 29 H 1.08997 * 109.47665 * 240.00279 * 2 1 3 30 30 H 1.48503 * 109.99622 * 59.99711 * 3 2 1 31 31 H 1.48498 * 109.99932 * 181.31456 * 3 2 1 32 32 H 1.08002 * 120.06276 * 359.97438 * 5 4 2 33 33 H 0.96998 * 120.00189 * 359.97438 * 9 7 6 34 34 H 1.08999 * 113.61526 * 334.56550 * 12 10 9 35 35 H 1.09004 * 113.61886 * 203.66560 * 12 10 9 36 36 H 1.08005 * 119.97538 * 359.97438 * 16 15 13 37 37 H 1.07994 * 119.99428 * 180.02562 * 17 16 15 38 38 H 1.08001 * 120.02335 * 180.02562 * 20 18 17 39 39 H 1.09004 * 113.61451 * 156.33708 * 23 10 9 40 40 H 1.08994 * 113.61477 * 25.43010 * 23 10 9 41 41 H 1.07992 * 120.07925 * 180.27647 * 24 6 5 42 42 H 1.08002 * 119.85541 * 0.02992 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6890 -2.0585 1.3938 6 6 2.1502 -2.7144 2.5366 7 6 1.8893 -4.1581 2.7200 8 8 1.2677 -4.7752 1.8774 9 7 2.3407 -4.7897 3.8218 10 6 2.0817 -6.2201 4.0039 11 1 1.2121 -6.5682 3.4465 12 6 3.3279 -7.1008 3.8140 13 6 3.5988 -6.9044 5.3150 14 1 4.2063 -6.0276 5.5394 15 6 4.0897 -8.1493 6.0078 16 6 3.5796 -9.3837 5.6535 17 6 4.0293 -10.5267 6.2878 18 6 4.9913 -10.4357 7.2794 19 9 5.4302 -11.5527 7.8995 20 6 5.5023 -9.1994 7.6360 21 6 5.0551 -8.0564 6.9965 22 9 5.5570 -6.8499 7.3396 23 6 2.0883 -6.6648 5.4760 24 6 2.8635 -2.0030 3.5022 25 6 3.1041 -0.6551 3.3242 26 35 4.0698 0.3117 4.6313 27 6 2.6392 -0.0100 2.1911 28 1 -0.3933 0.4417 -0.7651 29 1 1.7924 -0.5138 -0.8899 30 1 1.5614 2.4679 1.2085 31 1 3.5346 1.7704 -0.0320 32 1 1.1396 -2.6045 0.6412 33 1 2.8370 -4.2972 4.4941 34 1 4.0856 -6.6526 3.1713 35 1 3.0974 -8.1311 3.5431 36 1 2.8289 -9.4556 4.8804 37 1 3.6302 -11.4909 6.0098 38 1 6.2530 -9.1276 8.4091 39 1 1.5188 -7.5759 5.6595 40 1 1.8453 -5.8645 6.1749 41 1 3.2268 -2.5056 4.3863 42 1 2.8295 1.0446 2.0565 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13428180_12335870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:05:49 Heat of formation + Delta-G solvation = -65.747811 kcal Electronic energy + Delta-G solvation = -30710.525010 eV Core-core repulsion = 25919.388644 eV Total energy + Delta-G solvation = -4791.136367 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 424.027 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.07587 -50.01963 -41.91797 -41.03778 -39.88124 -38.72166 -37.71933 -34.90940 -33.74023 -33.15308 -31.96444 -31.44057 -30.56420 -27.13945 -26.94705 -26.66395 -25.27768 -24.26199 -22.96557 -22.74934 -21.68605 -20.45435 -19.40197 -18.95127 -18.57221 -18.27912 -17.92134 -17.51418 -17.18908 -17.05274 -16.83575 -16.48715 -16.35068 -16.22183 -16.12996 -15.57972 -15.46332 -15.38513 -15.21933 -14.88621 -14.85625 -14.39979 -14.23363 -14.07087 -13.90572 -13.70930 -13.61415 -13.58081 -12.93434 -12.73596 -12.67395 -12.47392 -12.22590 -12.14095 -11.95741 -11.87987 -11.56613 -11.48269 -11.12300 -10.56228 -10.36204 -10.22186 -10.15726 -9.97972 -9.67148 -5.11597 -0.58285 -0.23541 -0.20200 -0.12569 0.32726 1.10304 1.46684 1.54606 1.80529 1.85338 2.18093 2.41270 2.76172 3.05144 3.14359 3.25352 3.32730 3.36607 3.46461 3.50984 3.53403 3.63519 3.69440 3.77655 3.79295 3.89311 3.91464 4.02765 4.04653 4.19960 4.38212 4.42831 4.49759 4.59056 4.63190 4.66214 4.69461 4.74484 4.80699 4.82897 4.85217 4.90641 4.94423 5.01671 5.11863 5.29739 5.40842 5.63397 6.25672 6.48123 7.00232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.072 4.072 3 Si 0.681 3.319 4 C -0.073 4.073 5 C -0.013 4.013 6 C -0.127 4.127 7 C 0.567 3.433 8 O -0.523 6.523 9 N -0.709 5.709 10 C 0.120 3.880 11 H 0.111 0.889 12 C -0.142 4.142 13 C -0.076 4.076 14 H 0.103 0.897 15 C -0.115 4.115 16 C -0.060 4.060 17 C -0.159 4.159 18 C 0.128 3.872 19 F -0.130 7.130 20 C -0.190 4.190 21 C 0.133 3.867 22 F -0.129 7.129 23 C -0.135 4.135 24 C -0.054 4.054 25 C -0.093 4.093 26 Br -0.031 7.031 27 C -0.069 4.069 28 H 0.386 0.614 29 H 0.082 0.918 30 H -0.246 1.246 31 H -0.250 1.250 32 H 0.150 0.850 33 H 0.401 0.599 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.140 0.860 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.779 1.469 -2.688 3.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.183 4.183 3 Si 0.581 3.419 4 C -0.075 4.075 5 C -0.033 4.033 6 C -0.131 4.131 7 C 0.354 3.646 8 O -0.399 6.399 9 N -0.361 5.361 10 C 0.015 3.985 11 H 0.129 0.871 12 C -0.181 4.181 13 C -0.094 4.094 14 H 0.121 0.879 15 C -0.116 4.116 16 C -0.078 4.078 17 C -0.178 4.178 18 C 0.108 3.892 19 F -0.108 7.108 20 C -0.209 4.209 21 C 0.114 3.886 22 F -0.107 7.107 23 C -0.173 4.173 24 C -0.074 4.074 25 C -0.173 4.173 26 Br 0.054 6.946 27 C -0.089 4.089 28 H 0.235 0.765 29 H 0.100 0.900 30 H -0.170 1.170 31 H -0.174 1.174 32 H 0.168 0.832 33 H 0.237 0.763 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.167 0.833 39 H 0.121 0.879 40 H 0.099 0.901 41 H 0.158 0.842 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.250 1.669 -1.771 2.446 hybrid contribution 0.509 -0.505 0.629 0.954 sum 0.259 1.164 -1.142 1.651 Atomic orbital electron populations 1.86495 1.16626 1.81932 1.49914 1.24652 0.86266 1.10559 0.96810 0.95035 0.81108 0.77979 0.87748 1.19324 0.98766 0.93843 0.95519 1.21283 0.93212 0.93020 0.95749 1.19935 1.02719 0.93764 0.96713 1.18041 0.78751 0.86177 0.81629 1.90822 1.39685 1.67122 1.42263 1.45577 1.57664 1.09877 1.22958 1.21868 0.99267 0.79951 0.97399 0.87055 1.23592 0.98379 1.01200 0.94899 1.21569 0.96830 0.95271 0.95769 0.87852 1.19783 0.97772 0.96396 0.97655 1.20775 0.98528 0.89990 0.98489 1.21261 0.98457 1.00808 0.97254 1.17342 0.95888 0.82077 0.93867 1.91558 1.88186 1.49944 1.81135 1.21086 1.04837 0.90679 1.04348 1.17143 0.95111 0.80325 0.96023 1.91529 1.85918 1.42181 1.91071 1.23459 0.94920 1.02904 0.95968 1.21273 0.95552 0.92215 0.98371 1.21592 1.04091 0.95159 0.96417 1.96840 1.72321 1.73687 1.51719 1.21111 0.96134 0.99568 0.92067 0.76549 0.89979 1.17040 1.17441 0.83187 0.76281 0.90302 0.88248 0.83657 0.83725 0.83296 0.87893 0.90118 0.84239 0.84821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.31 12.81 -35.23 -0.45 -0.15 16 2 C -0.07 0.07 2.79 36.00 0.10 0.17 16 3 Si 0.68 -1.25 29.84 -169.99 -5.07 -6.33 16 4 C -0.07 -0.10 5.38 -104.69 -0.56 -0.66 16 5 C -0.01 -0.02 9.23 -39.18 -0.36 -0.39 16 6 C -0.13 -0.16 5.87 -104.97 -0.62 -0.77 16 7 C 0.57 1.06 7.77 -12.33 -0.10 0.96 16 8 O -0.52 -2.74 15.95 5.32 0.08 -2.66 16 9 N -0.71 0.73 5.21 -53.96 -0.28 0.45 16 10 C 0.12 -0.19 4.32 -67.12 -0.29 -0.48 16 11 H 0.11 -0.03 7.47 -51.93 -0.39 -0.42 16 12 C -0.14 0.31 7.25 -25.92 -0.19 0.12 16 13 C -0.08 0.17 3.78 -90.96 -0.34 -0.17 16 14 H 0.10 -0.22 7.44 -51.93 -0.39 -0.60 16 15 C -0.11 0.13 5.29 -104.55 -0.55 -0.43 16 16 C -0.06 0.13 8.60 -39.60 -0.34 -0.21 16 17 C -0.16 0.19 10.03 -39.50 -0.40 -0.20 16 18 C 0.13 0.06 7.30 -39.42 -0.29 -0.23 16 19 F -0.13 -0.24 17.27 2.25 0.04 -0.20 16 20 C -0.19 -0.07 10.01 -39.45 -0.39 -0.46 16 21 C 0.13 0.05 7.24 -39.43 -0.29 -0.24 16 22 F -0.13 -0.16 16.36 2.25 0.04 -0.13 16 23 C -0.13 0.39 7.29 -25.91 -0.19 0.20 16 24 C -0.05 0.00 9.28 -39.15 -0.36 -0.36 16 25 C -0.09 -0.10 6.22 -39.57 -0.25 -0.35 16 26 Br -0.03 -0.03 33.69 -68.01 -2.29 -2.32 16 27 C -0.07 -0.11 8.40 -39.47 -0.33 -0.44 16 28 H 0.39 -2.16 8.74 45.56 0.40 -1.76 16 29 H 0.08 -0.22 7.96 -51.93 -0.41 -0.64 16 30 H -0.25 -0.29 7.05 56.52 0.40 0.11 16 31 H -0.25 -0.12 7.11 56.52 0.40 0.28 16 32 H 0.15 0.30 7.65 -52.49 -0.40 -0.11 16 33 H 0.40 -1.26 6.74 -40.82 -0.27 -1.53 16 34 H 0.08 -0.09 8.14 -51.93 -0.42 -0.52 16 35 H 0.10 -0.32 6.31 -51.93 -0.33 -0.65 16 36 H 0.15 -0.63 6.66 -52.48 -0.35 -0.98 16 37 H 0.14 -0.41 8.06 -52.49 -0.42 -0.84 16 38 H 0.15 -0.10 8.06 -52.49 -0.42 -0.52 16 39 H 0.10 -0.37 7.72 -51.93 -0.40 -0.77 16 40 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 41 H 0.14 -0.37 6.40 -52.49 -0.34 -0.70 16 42 H 0.13 0.16 4.85 -52.49 -0.25 -0.09 16 LS Contribution 381.69 15.07 5.75 5.75 Total: 0.00 -7.95 381.69 -11.96 -19.90 By element: Atomic # 1 Polarization: -6.37 SS G_CDS: -4.03 Total: -10.39 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -5.75 Total: -3.94 kcal Atomic # 7 Polarization: 0.73 SS G_CDS: -0.28 Total: 0.45 kcal Atomic # 8 Polarization: -2.44 SS G_CDS: -0.37 Total: -2.81 kcal Atomic # 9 Polarization: -0.40 SS G_CDS: 0.08 Total: -0.33 kcal Atomic # 14 Polarization: -1.25 SS G_CDS: -5.07 Total: -6.33 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -2.29 Total: -2.32 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -7.95 -11.96 -19.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_12335870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.843 kcal (2) G-P(sol) polarization free energy of solvation -7.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds