Wall clock time and date at job start Sun Mar 7 2021 00:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86307 * 109.47006 * 2 1 4 4 C 1.50694 * 109.47082 * 119.99999 * 2 1 3 5 5 C 1.37939 * 119.92452 * 65.26173 * 4 2 1 6 6 C 1.39601 * 119.87510 * 180.25595 * 5 4 2 7 7 C 1.47849 * 120.13801 * 179.76902 * 6 5 4 8 8 O 1.21550 * 119.99957 * 359.71323 * 7 6 5 9 9 N 1.34781 * 119.99616 * 179.72419 * 7 6 5 10 10 C 1.46501 * 119.99552 * 179.97438 * 9 7 6 11 11 H 1.08993 * 112.91182 * 336.24587 * 10 9 7 12 12 C 1.53778 * 113.61560 * 107.49938 * 10 9 7 13 13 C 1.53778 * 87.08449 * 89.11214 * 12 10 9 14 14 H 1.09004 * 113.69215 * 270.87947 * 13 12 10 15 15 C 1.50694 * 113.61739 * 139.98049 * 13 12 10 16 16 C 1.38186 * 119.98852 * 322.50353 * 15 13 12 17 17 C 1.38231 * 120.05649 * 179.97438 * 16 15 13 18 18 C 1.38458 * 120.02186 * 0.02660 * 17 16 15 19 19 F 1.35090 * 120.01183 * 179.97438 * 18 17 16 20 20 C 1.38446 * 119.97285 * 0.02562 * 18 17 16 21 21 C 1.38398 * 119.94880 * 359.71836 * 20 18 17 22 22 F 1.35097 * 120.01078 * 180.27523 * 21 20 18 23 23 C 1.53784 * 113.61123 * 204.99529 * 10 9 7 24 24 C 1.39544 * 119.72246 * 359.48504 * 6 5 4 25 25 C 1.38077 * 119.83718 * 0.25691 * 24 6 5 26 26 Br 1.89095 * 119.93453 * 179.97438 * 25 24 6 27 27 C 1.38371 * 119.92283 * 244.99967 * 4 2 1 28 28 H 0.96704 * 113.99637 * 60.00450 * 1 2 3 29 29 H 1.08997 * 109.47665 * 240.00279 * 2 1 3 30 30 H 1.48503 * 109.99622 * 59.99711 * 3 2 1 31 31 H 1.48498 * 109.99932 * 181.31456 * 3 2 1 32 32 H 1.08002 * 120.06276 * 359.97438 * 5 4 2 33 33 H 0.96998 * 120.00189 * 359.97438 * 9 7 6 34 34 H 1.08999 * 113.61526 * 334.56550 * 12 10 9 35 35 H 1.09004 * 113.61886 * 203.66560 * 12 10 9 36 36 H 1.08005 * 119.97538 * 359.97438 * 16 15 13 37 37 H 1.07994 * 119.99428 * 180.02562 * 17 16 15 38 38 H 1.08001 * 120.02335 * 180.02562 * 20 18 17 39 39 H 1.09004 * 113.61451 * 156.33708 * 23 10 9 40 40 H 1.08994 * 113.61477 * 25.43010 * 23 10 9 41 41 H 1.07992 * 120.07925 * 180.27647 * 24 6 5 42 42 H 1.08002 * 119.85541 * 0.02992 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6890 -2.0585 1.3938 6 6 2.1502 -2.7144 2.5366 7 6 1.8893 -4.1581 2.7200 8 8 1.2677 -4.7752 1.8774 9 7 2.3407 -4.7897 3.8218 10 6 2.0817 -6.2201 4.0039 11 1 1.2121 -6.5682 3.4465 12 6 3.3279 -7.1008 3.8140 13 6 3.5988 -6.9044 5.3150 14 1 4.2063 -6.0276 5.5394 15 6 4.0897 -8.1493 6.0078 16 6 3.5796 -9.3837 5.6535 17 6 4.0293 -10.5267 6.2878 18 6 4.9913 -10.4357 7.2794 19 9 5.4302 -11.5527 7.8995 20 6 5.5023 -9.1994 7.6360 21 6 5.0551 -8.0564 6.9965 22 9 5.5570 -6.8499 7.3396 23 6 2.0883 -6.6648 5.4760 24 6 2.8635 -2.0030 3.5022 25 6 3.1041 -0.6551 3.3242 26 35 4.0698 0.3117 4.6313 27 6 2.6392 -0.0100 2.1911 28 1 -0.3933 0.4417 -0.7651 29 1 1.7924 -0.5138 -0.8899 30 1 1.5614 2.4679 1.2085 31 1 3.5346 1.7704 -0.0320 32 1 1.1396 -2.6045 0.6412 33 1 2.8370 -4.2972 4.4941 34 1 4.0856 -6.6526 3.1713 35 1 3.0974 -8.1311 3.5431 36 1 2.8289 -9.4556 4.8804 37 1 3.6302 -11.4909 6.0098 38 1 6.2530 -9.1276 8.4091 39 1 1.5188 -7.5759 5.6595 40 1 1.8453 -5.8645 6.1749 41 1 3.2268 -2.5056 4.3863 42 1 2.8295 1.0446 2.0565 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_12335870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:05:48 Heat of formation + Delta-G solvation = -61.056944 kcal Electronic energy + Delta-G solvation = -30710.321599 eV Core-core repulsion = 25919.388644 eV Total energy + Delta-G solvation = -4790.932955 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 424.027 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -50.09496 -50.06090 -41.92530 -40.99915 -39.91185 -38.69395 -37.65402 -34.95790 -33.80276 -33.16845 -31.88351 -31.37661 -30.63304 -27.10395 -26.75603 -26.63145 -25.27253 -24.19936 -22.90367 -22.79244 -21.72031 -20.36675 -19.38413 -18.96887 -18.47198 -18.24735 -17.96336 -17.51409 -17.12424 -17.06846 -16.81322 -16.46173 -16.39448 -16.24474 -16.20905 -15.56262 -15.46211 -15.30656 -15.19345 -14.90366 -14.84332 -14.41631 -14.24813 -14.00684 -13.79498 -13.64009 -13.57096 -13.46132 -12.87740 -12.79490 -12.58370 -12.48798 -12.19730 -12.09401 -11.97821 -11.77188 -11.64486 -11.34972 -11.26027 -10.56651 -10.35268 -10.18153 -10.10184 -10.03597 -9.61446 -5.00094 -0.67290 -0.29150 -0.14290 -0.04884 0.25105 1.20706 1.39552 1.60728 1.84391 1.90375 2.26398 2.34015 2.80735 3.09166 3.22119 3.27737 3.42395 3.46733 3.57514 3.61856 3.63134 3.65854 3.75328 3.84381 3.88171 3.91639 4.04226 4.05798 4.15215 4.19707 4.45447 4.55541 4.60160 4.67250 4.72164 4.78413 4.80566 4.82541 4.87086 4.89662 4.95411 4.98457 5.06129 5.07857 5.20541 5.25510 5.50564 5.71108 6.27593 6.85390 6.95160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.080 4.080 3 Si 0.768 3.232 4 C -0.083 4.083 5 C -0.024 4.024 6 C -0.132 4.132 7 C 0.567 3.433 8 O -0.563 6.563 9 N -0.696 5.696 10 C 0.114 3.886 11 H 0.100 0.900 12 C -0.137 4.137 13 C -0.074 4.074 14 H 0.102 0.898 15 C -0.111 4.111 16 C -0.055 4.055 17 C -0.154 4.154 18 C 0.107 3.893 19 F -0.142 7.142 20 C -0.199 4.199 21 C 0.115 3.885 22 F -0.138 7.138 23 C -0.123 4.123 24 C -0.046 4.046 25 C -0.100 4.100 26 Br -0.030 7.030 27 C -0.082 4.082 28 H 0.407 0.593 29 H 0.102 0.898 30 H -0.289 1.289 31 H -0.281 1.281 32 H 0.144 0.856 33 H 0.412 0.588 34 H 0.069 0.931 35 H 0.114 0.886 36 H 0.173 0.827 37 H 0.163 0.837 38 H 0.150 0.850 39 H 0.116 0.884 40 H 0.085 0.915 41 H 0.165 0.835 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.268 1.145 -2.998 3.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.190 4.190 3 Si 0.673 3.327 4 C -0.085 4.085 5 C -0.043 4.043 6 C -0.136 4.136 7 C 0.355 3.645 8 O -0.442 6.442 9 N -0.347 5.347 10 C 0.009 3.991 11 H 0.118 0.882 12 C -0.175 4.175 13 C -0.092 4.092 14 H 0.120 0.880 15 C -0.112 4.112 16 C -0.072 4.072 17 C -0.173 4.173 18 C 0.088 3.912 19 F -0.121 7.121 20 C -0.219 4.219 21 C 0.096 3.904 22 F -0.116 7.116 23 C -0.161 4.161 24 C -0.066 4.066 25 C -0.180 4.180 26 Br 0.056 6.944 27 C -0.102 4.102 28 H 0.259 0.741 29 H 0.120 0.880 30 H -0.217 1.217 31 H -0.208 1.208 32 H 0.162 0.838 33 H 0.250 0.750 34 H 0.088 0.912 35 H 0.132 0.868 36 H 0.190 0.810 37 H 0.180 0.820 38 H 0.168 0.832 39 H 0.134 0.866 40 H 0.103 0.897 41 H 0.182 0.818 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.736 1.340 -2.078 2.580 hybrid contribution 0.668 -0.392 0.759 1.084 sum -0.069 0.948 -1.319 1.625 Atomic orbital electron populations 1.86444 1.16706 1.82532 1.51584 1.24826 0.86381 1.11205 0.96604 0.94110 0.77864 0.75487 0.85273 1.19611 0.98630 0.93862 0.96351 1.21339 0.93613 0.93331 0.96061 1.19967 1.03063 0.93637 0.96979 1.18134 0.78344 0.86288 0.81765 1.90798 1.41740 1.67886 1.43774 1.45526 1.56662 1.10314 1.22225 1.21952 0.99252 0.79505 0.98430 0.88209 1.23600 0.97544 1.01748 0.94647 1.21561 0.97283 0.94806 0.95559 0.88012 1.19958 0.97052 0.97268 0.96954 1.21080 0.98514 0.89116 0.98535 1.21527 0.97485 1.02020 0.96269 1.17574 0.97024 0.81717 0.94900 1.91522 1.88516 1.50501 1.81558 1.21167 1.05121 0.90937 1.04641 1.17325 0.96079 0.79986 0.97014 1.91501 1.86208 1.42633 1.91299 1.23443 0.94319 1.03548 0.94785 1.21467 0.94623 0.91782 0.98721 1.21706 1.04243 0.95641 0.96405 1.96836 1.72266 1.73807 1.51509 1.21234 0.96668 0.99666 0.92599 0.74130 0.87993 1.21690 1.20825 0.83809 0.74972 0.91246 0.86827 0.80959 0.81972 0.83245 0.86583 0.89667 0.81763 0.85024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.68 12.81 -148.98 -1.91 -1.23 16 2 C -0.08 0.15 2.79 71.23 0.20 0.34 16 3 Si 0.77 -2.56 29.84 68.60 2.05 -0.51 16 4 C -0.08 -0.28 5.38 -19.91 -0.11 -0.39 16 5 C -0.02 -0.11 9.23 22.53 0.21 0.10 16 6 C -0.13 -0.40 5.87 -20.09 -0.12 -0.51 16 7 C 0.57 2.37 7.77 86.79 0.67 3.04 16 8 O -0.56 -6.50 15.95 -3.87 -0.06 -6.57 16 9 N -0.70 1.68 5.21 -442.90 -2.31 -0.63 16 10 C 0.11 -0.43 4.32 45.52 0.20 -0.24 16 11 H 0.10 -0.08 7.47 -2.39 -0.02 -0.09 16 12 C -0.14 0.74 7.25 31.12 0.23 0.97 16 13 C -0.07 0.41 3.78 -11.01 -0.04 0.37 16 14 H 0.10 -0.51 7.44 -2.39 -0.02 -0.52 16 15 C -0.11 0.34 5.29 -19.82 -0.10 0.24 16 16 C -0.05 0.32 8.60 22.26 0.19 0.51 16 17 C -0.15 0.53 10.03 22.32 0.22 0.76 16 18 C 0.11 0.13 7.30 22.37 0.16 0.30 16 19 F -0.14 -0.63 17.27 44.97 0.78 0.15 16 20 C -0.20 -0.29 10.01 22.36 0.22 -0.06 16 21 C 0.12 0.11 7.24 22.37 0.16 0.27 16 22 F -0.14 -0.42 16.36 44.97 0.74 0.32 16 23 C -0.12 0.90 7.29 31.12 0.23 1.13 16 24 C -0.05 0.01 9.28 22.55 0.21 0.22 16 25 C -0.10 -0.25 6.22 22.27 0.14 -0.11 16 26 Br -0.03 -0.05 33.69 -20.37 -0.69 -0.74 16 27 C -0.08 -0.32 8.40 22.34 0.19 -0.13 16 28 H 0.41 -4.80 8.74 -74.05 -0.65 -5.45 16 29 H 0.10 -0.61 7.96 -2.39 -0.02 -0.63 16 30 H -0.29 -1.09 7.05 99.48 0.70 -0.39 16 31 H -0.28 -0.49 7.11 99.48 0.71 0.22 16 32 H 0.14 0.78 7.65 -2.91 -0.02 0.76 16 33 H 0.41 -2.94 6.74 -92.71 -0.62 -3.57 16 34 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 35 H 0.11 -0.94 6.31 -2.38 -0.02 -0.95 16 36 H 0.17 -1.99 6.66 -2.91 -0.02 -2.01 16 37 H 0.16 -1.19 8.06 -2.91 -0.02 -1.21 16 38 H 0.15 0.02 8.06 -2.91 -0.02 0.00 16 39 H 0.12 -1.10 7.72 -2.39 -0.02 -1.12 16 40 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 41 H 0.16 -1.02 6.40 -2.91 -0.02 -1.03 16 42 H 0.13 0.48 4.85 -2.91 -0.01 0.46 16 Total: 0.00 -20.19 381.69 1.34 -18.85 By element: Atomic # 1 Polarization: -16.32 SS G_CDS: -0.11 Total: -16.43 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 2.86 Total: 6.79 kcal Atomic # 7 Polarization: 1.68 SS G_CDS: -2.31 Total: -0.63 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -1.97 Total: -7.79 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 1.51 Total: 0.47 kcal Atomic # 14 Polarization: -2.56 SS G_CDS: 2.05 Total: -0.51 kcal Atomic # 35 Polarization: -0.05 SS G_CDS: -0.69 Total: -0.74 kcal Total: -20.19 1.34 -18.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_12335870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.207 kcal (2) G-P(sol) polarization free energy of solvation -20.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds