Wall clock time and date at job start Sun Mar 7 2021 00:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86298 * 109.46948 * 2 1 4 4 C 1.50690 * 109.47339 * 239.99734 * 2 1 3 5 5 C 1.38405 * 119.82861 * 299.99923 * 4 2 1 6 6 C 1.37893 * 120.17059 * 180.02562 * 5 4 2 7 7 C 1.39834 * 119.82506 * 359.97438 * 6 5 4 8 8 C 1.47210 * 120.16945 * 179.97438 * 7 6 5 9 9 C 1.34804 * 120.00321 * 179.97438 * 8 7 6 10 10 C 1.46429 * 120.00230 * 179.97438 * 9 8 7 11 11 O 1.21696 * 120.00132 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99936 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99927 * 180.02562 * 12 10 9 14 14 H 1.09002 * 112.84945 * 23.80814 * 13 12 10 15 15 C 1.53784 * 113.61255 * 154.99869 * 13 12 10 16 16 C 1.53784 * 87.07956 * 89.20578 * 15 13 12 17 17 H 1.09006 * 113.61484 * 270.80081 * 16 15 13 18 18 C 1.50693 * 113.61894 * 139.97987 * 16 15 13 19 19 C 1.38454 * 119.99161 * 119.99890 * 18 16 15 20 20 F 1.35104 * 120.00837 * 0.02562 * 19 18 16 21 21 C 1.38438 * 119.97743 * 179.75127 * 19 18 16 22 22 C 1.38397 * 119.94948 * 0.24807 * 21 19 18 23 23 F 1.35103 * 120.01233 * 179.97438 * 22 21 19 24 24 C 1.38497 * 119.97392 * 0.02562 * 22 21 19 25 25 C 1.38183 * 120.02804 * 0.02562 * 24 22 21 26 26 C 1.53777 * 113.69235 * 252.53548 * 13 12 10 27 27 C 1.39836 * 119.66424 * 0.25313 * 7 6 5 28 28 C 1.37894 * 119.82400 * 359.49300 * 27 7 6 29 29 H 0.96693 * 113.99783 * 60.00163 * 1 2 3 30 30 H 1.09004 * 109.47131 * 119.99745 * 2 1 3 31 31 H 1.48500 * 110.00414 * 59.99950 * 3 2 1 32 32 H 1.48506 * 110.00170 * 181.31632 * 3 2 1 33 33 H 1.07996 * 119.91404 * 0.02562 * 5 4 2 34 34 H 1.07997 * 120.08697 * 179.97438 * 6 5 4 35 35 H 1.08004 * 120.00160 * 359.97438 * 8 7 6 36 36 H 1.08001 * 120.00242 * 0.02562 * 9 8 7 37 37 H 0.97000 * 120.00470 * 0.02562 * 12 10 9 38 38 H 1.08997 * 113.61929 * 334.66044 * 15 13 12 39 39 H 1.08999 * 113.69102 * 203.76231 * 15 13 12 40 40 H 1.07995 * 120.02326 * 180.23077 * 21 19 18 41 41 H 1.08004 * 119.98764 * 179.97438 * 24 22 21 42 42 H 1.07996 * 119.97471 * 179.97438 * 25 24 22 43 43 H 1.09001 * 113.61183 * 156.32137 * 26 13 12 44 44 H 1.09001 * 113.61570 * 25.42630 * 26 13 12 45 45 H 1.07994 * 120.08765 * 179.72475 * 27 7 6 46 46 H 1.07995 * 119.91423 * 180.25551 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2303 5 6 1.5949 -2.0355 -1.4458 6 6 2.0511 -2.6926 -2.5690 7 6 2.8553 -2.0164 -3.4917 8 6 3.3470 -2.7107 -4.6931 9 6 4.1216 -2.0555 -5.5807 10 6 4.6111 -2.7462 -6.7754 11 8 4.3184 -3.9118 -6.9673 12 7 5.3860 -2.0913 -7.6625 13 6 5.8753 -2.7822 -8.8581 14 1 5.2528 -3.6311 -9.1410 15 6 6.1963 -1.8369 -10.0279 16 6 7.6162 -1.7281 -9.4473 17 1 7.7299 -0.9248 -8.7193 18 6 8.6986 -1.7252 -10.4957 19 6 9.5550 -0.6426 -10.6033 20 9 9.4206 0.4109 -9.7682 21 6 10.5525 -0.6425 -11.5632 22 6 10.6893 -1.7225 -12.4177 23 9 11.6621 -1.7235 -13.3552 24 6 9.8280 -2.8019 -12.3119 25 6 8.8320 -2.8005 -11.3541 26 6 7.3774 -3.1081 -8.8122 27 6 3.1948 -0.6791 -3.2646 28 6 2.7265 -0.0342 -2.1393 29 1 -0.3933 0.4417 -0.7650 30 1 1.7924 -0.5138 0.8900 31 1 1.5615 2.4680 1.2085 32 1 3.5346 1.7704 -0.0321 33 1 0.9734 -2.5562 -0.7324 34 1 1.7881 -3.7267 -2.7355 35 1 3.0872 -3.7451 -4.8634 36 1 4.3818 -1.0212 -5.4103 37 1 5.6197 -1.1624 -7.5095 38 1 5.6395 -0.9004 -9.9980 39 1 6.1597 -2.3201 -11.0042 40 1 11.2233 0.2000 -11.6454 41 1 9.9343 -3.6447 -12.9789 42 1 8.1605 -3.6425 -11.2727 43 1 7.6635 -3.9402 -9.4555 44 1 7.7740 -3.1980 -7.8008 45 1 3.8191 -0.1516 -3.9705 46 1 2.9844 0.9998 -1.9646 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_12360594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:05:58 Heat of formation + Delta-G solvation = -54.548107 kcal Electronic energy + Delta-G solvation = -30872.491766 eV Core-core repulsion = 26137.895298 eV Total energy + Delta-G solvation = -4734.596468 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.132 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -50.07116 -50.04425 -41.55338 -40.67502 -40.16413 -38.71995 -37.75588 -35.05470 -34.55353 -32.23177 -31.91422 -31.60647 -31.01189 -27.38121 -26.71432 -26.12608 -24.52375 -24.08463 -23.80647 -22.80615 -22.08622 -20.57505 -20.13771 -19.32818 -18.87038 -18.27272 -18.10285 -17.30488 -17.15722 -17.04933 -16.82694 -16.61743 -16.43161 -16.37316 -16.17779 -15.93420 -15.76928 -15.51178 -15.25466 -15.21722 -15.03312 -14.65963 -14.54865 -14.18424 -13.98850 -13.82309 -13.72528 -13.56110 -13.43444 -13.25867 -13.01338 -12.83798 -12.55959 -12.26556 -12.04658 -12.02998 -11.72209 -11.70265 -11.35376 -11.30307 -11.07666 -10.43805 -10.14577 -10.06864 -9.98246 -9.59592 -9.23449 -5.00217 -0.54808 -0.12712 -0.03400 0.39724 0.88969 1.31084 1.63159 1.97020 2.14697 2.22701 2.28474 2.82129 2.82247 3.30617 3.45220 3.47290 3.49952 3.58374 3.66085 3.68077 3.70223 3.82271 3.87913 3.94520 3.95193 4.08456 4.17906 4.18101 4.21948 4.36231 4.44548 4.51766 4.62274 4.70371 4.74882 4.83256 4.84346 4.85580 4.91456 4.92228 4.98276 5.01440 5.08014 5.09242 5.13056 5.17645 5.28480 5.39076 5.48304 5.60169 5.61881 5.72625 5.90406 6.53759 6.75616 7.21661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.079 4.079 3 Si 0.781 3.219 4 C -0.112 4.112 5 C -0.108 4.108 6 C -0.102 4.102 7 C -0.082 4.082 8 C -0.020 4.020 9 C -0.209 4.209 10 C 0.545 3.455 11 O -0.589 6.589 12 N -0.697 5.697 13 C 0.114 3.886 14 H 0.091 0.909 15 C -0.122 4.122 16 C -0.071 4.071 17 H 0.104 0.896 18 C -0.111 4.111 19 C 0.116 3.884 20 F -0.137 7.137 21 C -0.198 4.198 22 C 0.107 3.893 23 F -0.143 7.143 24 C -0.155 4.155 25 C -0.056 4.056 26 C -0.139 4.139 27 C -0.094 4.094 28 C -0.123 4.123 29 H 0.396 0.604 30 H 0.105 0.895 31 H -0.303 1.303 32 H -0.282 1.282 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.123 0.877 36 H 0.163 0.837 37 H 0.417 0.583 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.151 0.849 41 H 0.162 0.838 42 H 0.171 0.829 43 H 0.108 0.892 44 H 0.067 0.933 45 H 0.158 0.842 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.026 3.362 -2.356 4.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.189 4.189 3 Si 0.687 3.313 4 C -0.113 4.113 5 C -0.126 4.126 6 C -0.120 4.120 7 C -0.082 4.082 8 C -0.040 4.040 9 C -0.229 4.229 10 C 0.336 3.664 11 O -0.472 6.472 12 N -0.347 5.347 13 C 0.008 3.992 14 H 0.109 0.891 15 C -0.160 4.160 16 C -0.089 4.089 17 H 0.122 0.878 18 C -0.113 4.113 19 C 0.097 3.903 20 F -0.115 7.115 21 C -0.218 4.218 22 C 0.087 3.913 23 F -0.121 7.121 24 C -0.174 4.174 25 C -0.074 4.074 26 C -0.177 4.177 27 C -0.112 4.112 28 C -0.140 4.140 29 H 0.246 0.754 30 H 0.123 0.877 31 H -0.232 1.232 32 H -0.209 1.209 33 H 0.146 0.854 34 H 0.154 0.846 35 H 0.141 0.859 36 H 0.181 0.819 37 H 0.254 0.746 38 H 0.105 0.895 39 H 0.129 0.871 40 H 0.168 0.832 41 H 0.179 0.821 42 H 0.188 0.812 43 H 0.126 0.874 44 H 0.086 0.914 45 H 0.175 0.825 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.622 2.884 -1.559 3.337 hybrid contribution 0.645 -0.087 0.382 0.754 sum 0.023 2.797 -1.177 3.035 Atomic orbital electron populations 1.86474 1.17228 1.82196 1.50537 1.25257 0.85343 1.11084 0.97179 0.93691 0.77824 0.75009 0.84801 1.20614 0.98526 0.95136 0.96995 1.21064 0.99551 0.94298 0.97673 1.21612 0.96308 1.00563 0.93559 1.19125 0.99526 0.94627 0.94889 1.22362 0.91668 0.99204 0.90774 1.23007 1.02938 1.02324 0.94656 1.18715 0.77752 0.85972 0.83961 1.90817 1.59933 1.18713 1.77703 1.45484 1.50934 1.16038 1.22285 1.21853 0.95172 0.96627 0.85530 0.89056 1.23413 0.93801 1.00589 0.98218 1.21543 0.92320 0.99496 0.95571 0.87755 1.19985 0.97846 0.93658 0.99766 1.17301 0.96835 0.85490 0.90664 1.91503 1.95240 1.55218 1.69565 1.21166 1.01707 1.01046 0.97878 1.17571 0.88755 0.95967 0.88966 1.91525 1.60882 1.96743 1.62965 1.21516 0.95710 0.98610 1.01539 1.21070 0.96702 0.97846 0.91751 1.23588 0.95420 0.96832 1.01905 1.21660 0.98679 0.93303 0.97550 1.21185 0.98041 1.00444 0.94311 0.75437 0.87716 1.23153 1.20916 0.85410 0.84593 0.85941 0.81924 0.74579 0.89490 0.87060 0.83161 0.82076 0.81166 0.87352 0.91432 0.82478 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.28 12.76 -148.98 -1.90 -1.62 16 2 C -0.08 0.12 2.82 71.23 0.20 0.32 16 3 Si 0.78 -2.90 29.77 68.60 2.04 -0.86 16 4 C -0.11 0.16 5.40 -19.79 -0.11 0.05 16 5 C -0.11 -0.03 9.59 22.23 0.21 0.18 16 6 C -0.10 0.01 9.80 22.57 0.22 0.23 16 7 C -0.08 0.08 5.87 -20.15 -0.12 -0.04 16 8 C -0.02 0.00 9.46 23.84 0.23 0.23 16 9 C -0.21 0.53 9.41 23.62 0.22 0.75 16 10 C 0.55 1.31 7.74 86.38 0.67 1.98 16 11 O -0.59 -6.89 15.83 -4.34 -0.07 -6.95 16 12 N -0.70 2.61 5.26 -444.25 -2.34 0.27 16 13 C 0.11 -0.42 4.32 45.52 0.20 -0.22 16 14 H 0.09 0.03 7.46 -2.39 -0.02 0.02 16 15 C -0.12 0.92 7.29 31.12 0.23 1.14 16 16 C -0.07 0.41 3.78 -11.02 -0.04 0.37 16 17 H 0.10 -0.59 7.44 -2.38 -0.02 -0.61 16 18 C -0.11 0.36 5.30 -19.81 -0.10 0.25 16 19 C 0.12 0.06 7.24 22.37 0.16 0.22 16 20 F -0.14 -0.30 16.36 44.97 0.74 0.43 16 21 C -0.20 -0.21 10.01 22.36 0.22 0.01 16 22 C 0.11 0.12 7.30 22.37 0.16 0.28 16 23 F -0.14 -0.61 17.27 44.97 0.78 0.17 16 24 C -0.16 0.52 10.02 22.32 0.22 0.74 16 25 C -0.06 0.32 8.59 22.26 0.19 0.51 16 26 C -0.14 0.69 7.26 31.12 0.23 0.92 16 27 C -0.09 0.40 9.41 22.57 0.21 0.62 16 28 C -0.12 0.50 8.65 22.23 0.19 0.69 16 29 H 0.40 -3.42 8.70 -74.06 -0.64 -4.07 16 30 H 0.11 0.00 7.96 -2.38 -0.02 -0.01 16 31 H -0.30 -1.36 7.11 99.48 0.71 -0.65 16 32 H -0.28 -0.11 7.11 99.48 0.71 0.59 16 33 H 0.13 0.00 8.06 -2.91 -0.02 -0.02 16 34 H 0.14 -0.28 8.06 -2.91 -0.02 -0.31 16 35 H 0.12 0.34 7.52 -2.91 -0.02 0.32 16 36 H 0.16 -1.60 6.07 -2.91 -0.02 -1.62 16 37 H 0.42 -3.99 8.68 -92.71 -0.81 -4.80 16 38 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 39 H 0.11 -1.02 7.71 -2.39 -0.02 -1.04 16 40 H 0.15 -0.06 8.06 -2.91 -0.02 -0.08 16 41 H 0.16 -1.14 8.06 -2.91 -0.02 -1.17 16 42 H 0.17 -1.86 6.67 -2.91 -0.02 -1.88 16 43 H 0.11 -0.79 6.32 -2.39 -0.02 -0.80 16 44 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.16 -1.59 6.17 -2.91 -0.02 -1.61 16 46 H 0.15 -1.26 4.85 -2.91 -0.01 -1.27 16 Total: 0.00 -21.56 394.81 2.30 -19.26 By element: Atomic # 1 Polarization: -19.59 SS G_CDS: -0.35 Total: -19.94 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 3.40 Total: 9.24 kcal Atomic # 7 Polarization: 2.61 SS G_CDS: -2.34 Total: 0.27 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -1.97 Total: -8.57 kcal Atomic # 9 Polarization: -0.91 SS G_CDS: 1.51 Total: 0.60 kcal Atomic # 14 Polarization: -2.90 SS G_CDS: 2.04 Total: -0.86 kcal Total: -21.56 2.30 -19.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_12360594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.290 kcal (2) G-P(sol) polarization free energy of solvation -21.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds