Wall clock time and date at job start Sun Mar 7 2021 00:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86299 * 109.47397 * 2 1 4 4 C 1.50704 * 109.46992 * 120.00514 * 2 1 3 5 5 C 1.38192 * 119.83668 * 254.97042 * 4 2 1 6 6 C 1.38320 * 120.14002 * 179.76318 * 5 4 2 7 7 F 1.35102 * 120.08273 * 180.25714 * 6 5 4 8 8 C 1.39801 * 119.83118 * 0.51787 * 6 5 4 9 9 C 1.47696 * 120.15398 * 179.76840 * 8 6 5 10 10 O 1.21573 * 119.99881 * 359.71697 * 9 8 6 11 11 N 1.34773 * 120.00155 * 179.97438 * 9 8 6 12 12 C 1.46500 * 120.00431 * 179.72294 * 11 9 8 13 13 H 1.09007 * 112.84556 * 334.66988 * 12 11 9 14 14 C 1.53775 * 113.61643 * 105.86472 * 12 11 9 15 15 C 1.54054 * 86.98523 * 89.16477 * 14 12 11 16 16 H 1.08999 * 113.61002 * 270.88089 * 15 14 12 17 17 C 1.50697 * 113.69309 * 139.99264 * 15 14 12 18 18 C 1.38187 * 119.98714 * 322.46479 * 17 15 14 19 19 C 1.38230 * 120.04995 * 179.97438 * 18 17 15 20 20 C 1.38461 * 120.02612 * 0.02562 * 19 18 17 21 21 F 1.35096 * 120.01076 * 179.97438 * 20 19 18 22 22 C 1.38441 * 119.97114 * 0.02562 * 20 19 18 23 23 C 1.38396 * 119.94961 * 359.71731 * 22 20 19 24 24 F 1.35107 * 120.01191 * 180.27552 * 23 22 20 25 25 C 1.53778 * 113.61592 * 203.47769 * 12 11 9 26 26 C 1.39660 * 119.69255 * 359.48483 * 8 6 5 27 27 C 1.38065 * 119.84839 * 0.25764 * 26 8 6 28 28 F 1.35099 * 119.91626 * 180.02562 * 27 26 8 29 29 H 0.96707 * 114.00115 * 300.00341 * 1 2 3 30 30 H 1.09004 * 109.46860 * 239.99719 * 2 1 3 31 31 H 1.48498 * 110.00069 * 299.99914 * 3 2 1 32 32 H 1.48498 * 109.99946 * 61.32509 * 3 2 1 33 33 H 1.07996 * 119.92635 * 0.02562 * 5 4 2 34 34 H 0.97000 * 120.00112 * 359.72731 * 11 9 8 35 35 H 1.09005 * 113.61587 * 203.66936 * 14 12 11 36 36 H 1.09001 * 113.61321 * 334.56927 * 14 12 11 37 37 H 1.07997 * 119.97607 * 359.97438 * 18 17 15 38 38 H 1.08001 * 119.99070 * 180.02562 * 19 18 17 39 39 H 1.07997 * 120.02329 * 180.02562 * 22 20 19 40 40 H 1.08994 * 113.62154 * 25.42750 * 25 12 11 41 41 H 1.09004 * 113.61506 * 156.33462 * 25 12 11 42 42 H 1.07997 * 120.07188 * 180.27715 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7105 1.2304 5 6 2.4535 0.0197 2.2810 6 6 2.9118 -0.6257 3.4153 7 9 3.4174 0.0897 4.4439 8 6 2.8556 -2.0204 3.4925 9 6 3.3477 -2.7172 4.6982 10 8 3.8077 -2.0780 5.6244 11 7 3.2916 -4.0619 4.7696 12 6 3.7853 -4.7534 5.9630 13 1 4.5392 -4.1803 6.5027 14 6 2.6665 -5.3020 6.8642 15 6 2.7335 -6.5916 6.0241 16 1 2.0785 -6.5796 5.1530 17 6 2.6008 -7.8524 6.8387 18 6 3.1819 -7.9307 8.0900 19 6 3.0606 -9.0865 8.8385 20 6 2.3569 -10.1674 8.3349 21 9 2.2389 -11.2970 9.0665 22 6 1.7752 -10.0904 7.0810 23 6 1.8929 -8.9309 6.3347 24 9 1.3210 -8.8524 5.1132 25 6 4.1898 -6.2145 5.7052 26 6 2.3264 -2.7515 2.4267 27 6 1.8677 -2.0937 1.3028 28 9 1.3551 -2.7995 0.2712 29 1 -0.3934 0.4418 0.7651 30 1 1.7922 -0.5139 -0.8900 31 1 1.5616 2.4679 -1.2085 32 1 1.5881 2.4585 1.2243 33 1 2.5000 1.0968 2.2180 34 1 2.9243 -4.5719 4.0307 35 1 2.9701 -5.4405 7.9019 36 1 1.7237 -4.7638 6.7663 37 1 3.7313 -7.0882 8.4834 38 1 3.5148 -9.1464 9.8165 39 1 1.2258 -10.9329 6.6875 40 1 4.4760 -6.4127 4.6724 41 1 4.9092 -6.6021 6.4266 42 1 2.2759 -3.8289 2.4816 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_12360598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:06:02 Heat of formation + Delta-G solvation = -149.864751 kcal Electronic energy + Delta-G solvation = -33866.601009 eV Core-core repulsion = 28472.727110 eV Total energy + Delta-G solvation = -5393.873899 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.098 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -50.11067 -50.10405 -50.07743 -50.04851 -41.77168 -40.75083 -39.86179 -38.70077 -37.76595 -34.92100 -33.24235 -31.87573 -31.40151 -31.37403 -27.98945 -26.73428 -26.17752 -24.45545 -24.40764 -23.86231 -22.84182 -22.04780 -20.37889 -19.77761 -19.31108 -18.85726 -18.56113 -18.23534 -17.97887 -17.43233 -17.33400 -17.05312 -16.87392 -16.80142 -16.60175 -16.57330 -16.37746 -16.23873 -15.98658 -15.88639 -15.68961 -15.52482 -15.39089 -15.21712 -15.00378 -14.56153 -14.15782 -14.02060 -13.83436 -13.75822 -13.56576 -13.45349 -13.19712 -13.01279 -12.83627 -12.56580 -12.41714 -12.07014 -11.93207 -11.75643 -11.32745 -11.26586 -10.79051 -10.61376 -10.21756 -10.09507 -9.83158 -9.60011 -4.96235 -0.82475 -0.31783 -0.12992 -0.03600 1.15480 1.36953 1.53850 1.81191 1.91308 2.22144 2.28003 2.77875 2.81935 2.83820 3.09765 3.23393 3.28950 3.42727 3.44172 3.48104 3.51320 3.64080 3.66999 3.77363 3.85954 3.92996 4.07139 4.14244 4.18879 4.31376 4.37552 4.51377 4.60075 4.68552 4.69653 4.71582 4.74648 4.82380 4.84700 4.89221 4.91037 5.00423 5.07566 5.09698 5.23304 5.37207 5.52396 5.72399 6.28702 6.38172 6.97239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.088 4.088 3 Si 0.773 3.227 4 C -0.090 4.090 5 C -0.130 4.130 6 C 0.141 3.859 7 F -0.123 7.123 8 C -0.147 4.147 9 C 0.562 3.438 10 O -0.557 6.557 11 N -0.693 5.693 12 C 0.115 3.885 13 H 0.098 0.902 14 C -0.139 4.139 15 C -0.074 4.074 16 H 0.104 0.896 17 C -0.111 4.111 18 C -0.055 4.055 19 C -0.155 4.155 20 C 0.107 3.893 21 F -0.143 7.143 22 C -0.199 4.199 23 C 0.116 3.884 24 F -0.137 7.137 25 C -0.121 4.121 26 C -0.078 4.078 27 C 0.103 3.897 28 F -0.128 7.128 29 H 0.390 0.610 30 H 0.132 0.868 31 H -0.295 1.295 32 H -0.270 1.270 33 H 0.172 0.828 34 H 0.414 0.586 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.173 0.827 38 H 0.162 0.838 39 H 0.150 0.850 40 H 0.088 0.912 41 H 0.115 0.885 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.868 -0.383 -1.036 3.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.196 4.196 3 Si 0.677 3.323 4 C -0.092 4.092 5 C -0.148 4.148 6 C 0.121 3.879 7 F -0.101 7.101 8 C -0.152 4.152 9 C 0.349 3.651 10 O -0.435 6.435 11 N -0.345 5.345 12 C 0.010 3.990 13 H 0.116 0.884 14 C -0.177 4.177 15 C -0.092 4.092 16 H 0.122 0.878 17 C -0.112 4.112 18 C -0.073 4.073 19 C -0.174 4.174 20 C 0.087 3.913 21 F -0.121 7.121 22 C -0.219 4.219 23 C 0.097 3.903 24 F -0.116 7.116 25 C -0.159 4.159 26 C -0.097 4.097 27 C 0.084 3.916 28 F -0.107 7.107 29 H 0.240 0.760 30 H 0.150 0.850 31 H -0.222 1.222 32 H -0.196 1.196 33 H 0.189 0.811 34 H 0.253 0.747 35 H 0.130 0.870 36 H 0.086 0.914 37 H 0.190 0.810 38 H 0.179 0.821 39 H 0.167 0.833 40 H 0.107 0.893 41 H 0.133 0.867 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.046 0.510 -0.936 3.227 hybrid contribution -1.751 -0.924 0.057 1.981 sum 1.295 -0.415 -0.879 1.619 Atomic orbital electron populations 1.86657 1.17517 1.80416 1.50269 1.25321 0.84164 1.12700 0.97425 0.93831 0.90059 0.71043 0.77385 1.20446 0.98810 0.92555 0.97369 1.21110 1.00253 1.02398 0.91086 1.17778 0.96181 0.88399 0.85561 1.91608 1.84028 1.77568 1.56940 1.19815 1.06388 0.92378 0.96578 1.18006 0.78282 0.82916 0.85890 1.90874 1.46338 1.66731 1.39601 1.45474 1.62998 1.05259 1.20738 1.21936 0.97217 0.93450 0.86436 0.88378 1.23652 0.99501 0.94643 0.99928 1.21620 0.99131 0.90107 0.98337 0.87831 1.19964 0.99367 0.95074 0.96808 1.21079 0.96714 0.97862 0.91615 1.21527 1.00669 0.92236 1.02934 1.17580 0.99997 0.83723 0.89967 1.91523 1.94409 1.49634 1.76573 1.21167 1.05659 0.99872 0.95181 1.17315 0.96912 0.94707 0.81407 1.91504 1.82690 1.96589 1.40800 1.23423 0.95440 0.92492 1.04532 1.21337 0.96009 1.02289 0.90045 1.17360 0.99186 0.89076 0.86028 1.91573 1.84385 1.78210 1.56488 0.76025 0.85002 1.22200 1.19605 0.81136 0.74728 0.87029 0.91353 0.81004 0.82053 0.83254 0.89300 0.86670 0.80399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.13 12.88 -148.98 -1.92 -1.79 16 2 C -0.09 0.32 2.44 71.24 0.17 0.50 16 3 Si 0.77 -4.10 30.23 68.60 2.07 -2.03 16 4 C -0.09 0.30 5.27 -19.78 -0.10 0.20 16 5 C -0.13 0.40 8.62 22.28 0.19 0.59 16 6 C 0.14 0.23 7.28 22.67 0.17 0.40 16 7 F -0.12 -0.92 15.55 44.97 0.70 -0.22 16 8 C -0.15 0.05 5.88 -20.06 -0.12 -0.07 16 9 C 0.56 1.41 7.77 86.74 0.67 2.09 16 10 O -0.56 -6.27 14.96 -3.95 -0.06 -6.33 16 11 N -0.69 3.09 5.21 -443.06 -2.31 0.78 16 12 C 0.11 -0.58 4.29 45.51 0.20 -0.39 16 13 H 0.10 -0.17 7.50 -2.38 -0.02 -0.19 16 14 C -0.14 0.85 7.27 31.21 0.23 1.08 16 15 C -0.07 0.49 3.79 -10.92 -0.04 0.45 16 16 H 0.10 -0.67 7.44 -2.39 -0.02 -0.68 16 17 C -0.11 0.43 5.30 -19.82 -0.10 0.32 16 18 C -0.06 0.35 8.61 22.26 0.19 0.54 16 19 C -0.16 0.59 10.03 22.32 0.22 0.81 16 20 C 0.11 0.09 7.30 22.37 0.16 0.26 16 21 F -0.14 -0.59 17.27 44.97 0.78 0.19 16 22 C -0.20 -0.18 10.01 22.36 0.22 0.04 16 23 C 0.12 0.02 7.24 22.37 0.16 0.18 16 24 F -0.14 -0.29 16.36 44.97 0.74 0.45 16 25 C -0.12 1.07 7.29 31.12 0.23 1.29 16 26 C -0.08 0.39 9.52 22.57 0.21 0.61 16 27 C 0.10 -0.26 7.23 22.33 0.16 -0.10 16 28 F -0.13 -0.07 16.73 44.97 0.75 0.69 16 29 H 0.39 -2.57 8.70 -74.05 -0.64 -3.21 16 30 H 0.13 -0.61 7.89 -2.39 -0.02 -0.63 16 31 H -0.29 -0.74 7.11 99.48 0.71 -0.04 16 32 H -0.27 0.72 6.68 99.48 0.66 1.39 16 33 H 0.17 -1.05 4.83 -2.91 -0.01 -1.06 16 34 H 0.41 -4.17 6.74 -92.71 -0.62 -4.80 16 35 H 0.11 -0.96 6.33 -2.38 -0.02 -0.97 16 36 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 37 H 0.17 -2.05 6.66 -2.91 -0.02 -2.07 16 38 H 0.16 -1.22 8.06 -2.91 -0.02 -1.24 16 39 H 0.15 -0.05 8.06 -2.91 -0.02 -0.08 16 40 H 0.09 -0.86 8.14 -2.39 -0.02 -0.88 16 41 H 0.12 -1.23 7.72 -2.39 -0.02 -1.25 16 42 H 0.18 -2.03 6.40 -2.91 -0.02 -2.05 16 Total: 0.00 -20.94 370.73 3.45 -17.48 By element: Atomic # 1 Polarization: -17.89 SS G_CDS: -0.12 Total: -18.02 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 2.83 Total: 8.80 kcal Atomic # 7 Polarization: 3.09 SS G_CDS: -2.31 Total: 0.78 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -1.98 Total: -8.12 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 2.96 Total: 1.10 kcal Atomic # 14 Polarization: -4.10 SS G_CDS: 2.07 Total: -2.03 kcal Total: -20.94 3.45 -17.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_12360598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.381 kcal (2) G-P(sol) polarization free energy of solvation -20.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds