Wall clock time and date at job start Sun Mar 7 2021 00:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86302 * 109.46936 * 2 1 4 4 C 1.50702 * 109.47180 * 240.00368 * 2 1 3 5 5 C 1.37816 * 119.93835 * 255.32051 * 4 2 1 6 6 C 1.39670 * 119.87581 * 180.29520 * 5 4 2 7 7 C 1.47724 * 120.11428 * 179.67665 * 6 5 4 8 8 O 1.21568 * 120.00468 * 359.72786 * 7 6 5 9 9 N 1.34781 * 119.99659 * 179.72965 * 7 6 5 10 10 C 1.46504 * 119.99665 * 180.02562 * 9 7 6 11 11 H 1.08999 * 112.85136 * 336.19533 * 10 9 7 12 12 C 1.53779 * 113.61484 * 107.49929 * 10 9 7 13 13 C 1.53785 * 87.08093 * 89.11287 * 12 10 9 14 14 H 1.09002 * 113.61570 * 270.88522 * 13 12 10 15 15 C 1.50701 * 113.69000 * 139.98979 * 13 12 10 16 16 C 1.38460 * 119.98537 * 140.65869 * 15 13 12 17 17 F 1.35095 * 120.00810 * 0.02967 * 16 15 13 18 18 C 1.38441 * 119.97289 * 179.76781 * 16 15 13 19 19 C 1.38398 * 119.94756 * 0.48683 * 18 16 15 20 20 F 1.35097 * 120.01327 * 179.78756 * 19 18 16 21 21 C 1.38495 * 119.97581 * 359.77361 * 19 18 16 22 22 C 1.38183 * 120.02784 * 359.97438 * 21 19 18 23 23 C 1.53781 * 87.08241 * 25.43228 * 13 12 10 24 24 C 1.39631 * 119.76409 * 359.40414 * 6 5 4 25 25 C 1.37851 * 119.88135 * 0.27656 * 24 6 5 26 26 C 1.38634 * 120.11785 * 0.02562 * 25 24 6 27 27 F 1.35100 * 119.88160 * 179.97438 * 26 25 24 28 28 H 0.96704 * 114.00351 * 59.99617 * 1 2 3 29 29 H 1.09001 * 109.47621 * 119.99861 * 2 1 3 30 30 H 1.48507 * 110.00190 * 59.99980 * 3 2 1 31 31 H 1.48499 * 110.00269 * 181.31826 * 3 2 1 32 32 H 1.07995 * 120.06057 * 359.97438 * 5 4 2 33 33 H 0.96996 * 120.00382 * 359.97438 * 9 7 6 34 34 H 1.09003 * 113.61775 * 334.57164 * 12 10 9 35 35 H 1.08996 * 113.61960 * 203.65890 * 12 10 9 36 36 H 1.07991 * 120.02736 * 180.25786 * 18 16 15 37 37 H 1.08001 * 119.98764 * 180.02562 * 21 19 18 38 38 H 1.07997 * 119.97482 * 180.02562 * 22 21 19 39 39 H 1.09005 * 113.61302 * 89.11252 * 23 13 12 40 40 H 1.08993 * 113.62030 * 220.02098 * 23 13 12 41 41 H 1.08000 * 120.05738 * 180.29280 * 24 6 5 42 42 H 1.08001 * 119.94170 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.4459 -1.9846 -1.1272 6 6 2.9168 -2.6394 -2.2675 7 6 3.4761 -4.0026 -2.1616 8 8 3.5316 -4.5546 -1.0799 9 7 3.9248 -4.6343 -3.2644 10 6 4.4789 -5.9865 -3.1595 11 1 4.8556 -6.2134 -2.1622 12 6 3.5585 -7.0757 -3.7349 13 6 4.2531 -6.8383 -5.0863 14 1 3.7791 -6.0652 -5.6910 15 6 4.5217 -8.1036 -5.8596 16 6 4.3518 -8.1242 -7.2335 17 9 3.9458 -7.0101 -7.8809 18 6 4.6032 -9.2853 -7.9443 19 6 5.0146 -10.4271 -7.2791 20 9 5.2563 -11.5621 -7.9708 21 6 5.1788 -10.4056 -5.9041 22 6 4.9325 -9.2447 -5.1963 23 6 5.4662 -6.3365 -4.2854 24 6 2.8519 -2.0031 -3.5087 25 6 2.3291 -0.7309 -3.6018 26 6 1.8689 -0.0831 -2.4658 27 9 1.3580 1.1638 -2.5624 28 1 -0.3934 0.4418 -0.7650 29 1 1.7924 -0.5138 0.8900 30 1 1.5614 2.4680 1.2085 31 1 3.5345 1.7704 -0.0321 32 1 2.4898 -2.4740 -0.1655 33 1 3.8802 -4.1941 -4.1276 34 1 2.5034 -6.8020 -3.7324 35 1 3.7408 -8.0663 -3.3184 36 1 4.4750 -9.3011 -9.0164 37 1 5.5002 -11.2964 -5.3848 38 1 5.0611 -9.2288 -4.1241 39 1 6.1702 -7.1251 -4.0193 40 1 5.9513 -5.4661 -4.7270 41 1 3.2103 -2.5068 -4.3942 42 1 2.2780 -0.2380 -4.5614 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_12496548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:06:11 Heat of formation + Delta-G solvation = -111.333720 kcal Electronic energy + Delta-G solvation = -31072.412812 eV Core-core repulsion = 26149.663720 eV Total energy + Delta-G solvation = -4922.749093 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.107 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -50.35690 -50.06616 -50.04189 -41.78867 -40.77925 -39.67345 -38.64137 -37.69073 -34.83961 -32.89520 -32.15496 -31.81065 -31.18723 -27.06785 -26.71909 -26.43320 -25.00901 -24.15209 -23.53035 -22.85580 -21.66916 -20.33881 -19.41126 -19.16947 -18.70034 -18.23564 -17.89643 -17.81485 -17.29528 -17.04630 -17.01162 -16.84486 -16.55017 -16.36843 -16.27207 -16.07787 -15.68041 -15.51932 -15.44475 -15.21660 -15.06648 -14.75080 -14.46283 -14.23637 -14.02416 -13.99176 -13.77407 -13.55197 -13.48418 -13.37417 -12.94483 -12.81818 -12.56183 -12.49335 -12.05717 -11.99433 -11.73430 -11.32691 -11.24473 -10.69572 -10.26527 -10.13206 -10.09032 -9.84810 -9.59133 -4.92406 -0.53246 -0.12381 -0.02936 -0.00695 1.14937 1.48893 1.59086 1.84697 1.96373 2.28303 2.53257 2.82706 2.92280 3.25477 3.30113 3.45004 3.47605 3.51404 3.54074 3.59218 3.65666 3.68313 3.87453 3.93822 3.94001 4.07509 4.08902 4.18092 4.26088 4.58030 4.61289 4.70310 4.74648 4.75212 4.82237 4.84796 4.87100 4.90318 4.91672 4.98326 5.01382 5.05580 5.08177 5.12273 5.25582 5.53834 5.60131 5.72993 6.39438 6.57279 7.06914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.073 4.073 3 Si 0.745 3.255 4 C -0.166 4.166 5 C -0.031 4.031 6 C -0.156 4.156 7 C 0.562 3.438 8 O -0.576 6.576 9 N -0.694 5.694 10 C 0.113 3.887 11 H 0.094 0.906 12 C -0.139 4.139 13 C -0.071 4.071 14 H 0.107 0.893 15 C -0.111 4.111 16 C 0.118 3.882 17 F -0.136 7.136 18 C -0.199 4.199 19 C 0.107 3.893 20 F -0.143 7.143 21 C -0.156 4.156 22 C -0.056 4.056 23 C -0.122 4.122 24 C -0.042 4.042 25 C -0.142 4.142 26 C 0.122 3.878 27 F -0.100 7.100 28 H 0.392 0.608 29 H 0.112 0.888 30 H -0.287 1.287 31 H -0.285 1.285 32 H 0.131 0.869 33 H 0.416 0.584 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.151 0.849 37 H 0.161 0.839 38 H 0.171 0.829 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.174 0.826 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.394 1.208 -5.491 5.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.183 4.183 3 Si 0.650 3.350 4 C -0.167 4.167 5 C -0.050 4.050 6 C -0.159 4.159 7 C 0.351 3.649 8 O -0.457 6.457 9 N -0.345 5.345 10 C 0.008 3.992 11 H 0.112 0.888 12 C -0.177 4.177 13 C -0.089 4.089 14 H 0.125 0.875 15 C -0.112 4.112 16 C 0.098 3.902 17 F -0.114 7.114 18 C -0.218 4.218 19 C 0.087 3.913 20 F -0.122 7.122 21 C -0.175 4.175 22 C -0.074 4.074 23 C -0.160 4.160 24 C -0.060 4.060 25 C -0.160 4.160 26 C 0.102 3.898 27 F -0.078 7.078 28 H 0.242 0.758 29 H 0.130 0.870 30 H -0.215 1.215 31 H -0.211 1.211 32 H 0.149 0.851 33 H 0.254 0.746 34 H 0.087 0.913 35 H 0.127 0.873 36 H 0.168 0.832 37 H 0.178 0.822 38 H 0.188 0.812 39 H 0.130 0.870 40 H 0.107 0.893 41 H 0.192 0.808 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.981 1.136 -3.843 4.470 hybrid contribution -0.168 -0.443 -0.388 0.612 sum 1.813 0.693 -4.231 4.655 Atomic orbital electron populations 1.86523 1.16815 1.81952 1.50412 1.25052 0.85460 1.10965 0.96844 0.93884 0.78257 0.76932 0.85926 1.20282 1.04790 0.96381 0.95235 1.21003 0.92819 0.92110 0.99108 1.19977 1.05630 0.94912 0.95394 1.18353 0.77062 0.85519 0.83968 1.90798 1.57438 1.68357 1.29061 1.45465 1.62199 1.16615 1.10269 1.21911 0.95399 0.81384 1.00502 0.88831 1.23594 0.99599 1.00179 0.94378 1.21563 0.98681 0.93975 0.94725 0.87493 1.19972 1.02283 0.97856 0.91123 1.17286 0.99982 0.82543 0.90354 1.91501 1.87913 1.50275 1.81734 1.21171 1.06185 0.91991 1.02486 1.17579 1.01027 0.82002 0.90672 1.91524 1.91956 1.48858 1.79819 1.21513 1.02924 1.01463 0.91564 1.21062 0.94876 0.89636 1.01790 1.23430 0.95756 1.02746 0.94070 1.21549 0.94111 0.93742 0.96646 1.21466 0.99987 0.95654 0.98900 1.17896 0.97203 0.80510 0.94191 1.91192 1.84192 1.37667 1.94770 0.75777 0.87009 1.21468 1.21150 0.85147 0.74565 0.91267 0.87334 0.83167 0.82173 0.81196 0.86962 0.89261 0.80836 0.80112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.43 12.88 -148.98 -1.92 -3.35 16 2 C -0.07 -0.13 2.80 71.24 0.20 0.07 16 3 Si 0.75 0.94 29.57 68.60 2.03 2.97 16 4 C -0.17 -0.07 4.78 -19.86 -0.09 -0.17 16 5 C -0.03 -0.08 9.21 22.52 0.21 0.12 16 6 C -0.16 0.10 5.87 -20.09 -0.12 -0.02 16 7 C 0.56 1.34 7.77 86.75 0.67 2.01 16 8 O -0.58 -6.65 15.94 -3.93 -0.06 -6.71 16 9 N -0.69 3.41 5.21 -443.00 -2.31 1.10 16 10 C 0.11 -0.57 4.32 45.52 0.20 -0.37 16 11 H 0.09 -0.09 7.46 -2.39 -0.02 -0.10 16 12 C -0.14 0.86 7.26 31.12 0.23 1.09 16 13 C -0.07 0.52 3.78 -11.01 -0.04 0.48 16 14 H 0.11 -0.82 7.42 -2.39 -0.02 -0.84 16 15 C -0.11 0.48 5.30 -19.81 -0.10 0.38 16 16 C 0.12 -0.07 7.25 22.37 0.16 0.09 16 17 F -0.14 -0.12 16.35 44.97 0.74 0.61 16 18 C -0.20 -0.06 10.01 22.36 0.22 0.16 16 19 C 0.11 0.06 7.30 22.37 0.16 0.22 16 20 F -0.14 -0.55 17.27 44.97 0.78 0.22 16 21 C -0.16 0.60 10.02 22.32 0.22 0.83 16 22 C -0.06 0.36 8.54 22.25 0.19 0.55 16 23 C -0.12 1.09 7.29 31.12 0.23 1.32 16 24 C -0.04 0.33 9.54 22.51 0.21 0.55 16 25 C -0.14 1.15 10.01 22.27 0.22 1.37 16 26 C 0.12 -0.46 6.63 22.47 0.15 -0.31 16 27 F -0.10 0.55 13.46 44.97 0.61 1.15 16 28 H 0.39 -2.03 8.41 -74.05 -0.62 -2.66 16 29 H 0.11 0.32 7.77 -2.39 -0.02 0.30 16 30 H -0.29 -2.24 7.11 99.48 0.71 -1.53 16 31 H -0.28 -1.82 7.11 99.48 0.71 -1.12 16 32 H 0.13 0.71 7.59 -2.91 -0.02 0.68 16 33 H 0.42 -4.70 6.73 -92.71 -0.62 -5.33 16 34 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 35 H 0.11 -0.89 6.40 -2.39 -0.02 -0.91 16 36 H 0.15 -0.16 8.06 -2.92 -0.02 -0.19 16 37 H 0.16 -1.19 8.06 -2.91 -0.02 -1.22 16 38 H 0.17 -1.99 6.72 -2.91 -0.02 -2.01 16 39 H 0.11 -1.17 7.64 -2.38 -0.02 -1.19 16 40 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 41 H 0.17 -2.71 6.40 -2.91 -0.02 -2.72 16 42 H 0.18 -2.55 8.06 -2.91 -0.02 -2.57 16 Total: 0.00 -20.90 365.56 2.69 -18.22 By element: Atomic # 1 Polarization: -22.51 SS G_CDS: -0.09 Total: -22.60 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 2.92 Total: 8.38 kcal Atomic # 7 Polarization: 3.41 SS G_CDS: -2.31 Total: 1.10 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -1.98 Total: -10.06 kcal Atomic # 9 Polarization: -0.13 SS G_CDS: 2.12 Total: 1.99 kcal Atomic # 14 Polarization: 0.94 SS G_CDS: 2.03 Total: 2.97 kcal Total: -20.90 2.69 -18.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_12496548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.117 kcal (2) G-P(sol) polarization free energy of solvation -20.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds