Wall clock time and date at job start Sun Mar 7 2021 00:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86302 * 109.47203 * 2 1 4 4 C 1.50692 * 109.47245 * 119.99899 * 2 1 3 5 5 C 1.35091 * 126.07592 * 255.26641 * 4 2 1 6 6 N 1.35044 * 107.97771 * 180.14287 * 5 4 2 7 7 C 1.46499 * 125.93113 * 179.89705 * 6 5 4 8 8 C 1.50700 * 109.47257 * 124.71030 * 7 6 5 9 9 O 1.21283 * 119.99803 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99675 * 180.27849 * 8 7 6 11 11 C 1.46497 * 119.99525 * 179.72583 * 10 8 7 12 12 H 1.09007 * 112.85337 * 23.80486 * 11 10 8 13 13 C 1.53787 * 113.61173 * 154.99569 * 11 10 8 14 14 C 1.53781 * 87.07999 * 89.11873 * 13 11 10 15 15 H 1.09007 * 113.61195 * 270.88565 * 14 13 11 16 16 C 1.50692 * 113.61839 * 140.06445 * 14 13 11 17 17 C 1.38458 * 119.98615 * 119.72017 * 16 14 13 18 18 F 1.35097 * 120.01298 * 0.02787 * 17 16 14 19 19 C 1.38451 * 119.97242 * 179.76922 * 17 16 14 20 20 C 1.38399 * 119.94495 * 0.48940 * 19 17 16 21 21 F 1.35103 * 120.00615 * 179.79177 * 20 19 17 22 22 C 1.38489 * 119.98073 * 359.76328 * 20 19 17 23 23 C 1.38193 * 120.02356 * 0.02562 * 22 20 19 24 24 C 1.53777 * 113.61648 * 252.49385 * 11 10 8 25 25 N 1.40078 * 108.14007 * 359.62732 * 6 5 4 26 26 C 1.31618 * 108.10484 * 0.23310 * 25 6 5 27 27 C 1.48422 * 126.03576 * 180.02562 * 26 25 6 28 28 C 1.39332 * 120.12117 * 144.70048 * 27 26 25 29 29 C 1.38018 * 119.87530 * 179.69896 * 28 27 26 30 30 C 1.38321 * 120.12018 * 0.57392 * 29 28 27 31 31 C 1.38314 * 120.24177 * 359.71980 * 30 29 28 32 32 C 1.38020 * 120.12042 * 359.97438 * 31 30 29 33 33 H 0.96703 * 113.99549 * 59.99581 * 1 2 3 34 34 H 1.08997 * 109.46819 * 240.00136 * 2 1 3 35 35 H 1.48509 * 109.99848 * 298.68136 * 3 2 1 36 36 H 1.48495 * 110.00353 * 59.99888 * 3 2 1 37 37 H 1.07999 * 126.00975 * 0.03290 * 5 4 2 38 38 H 1.09009 * 109.46700 * 4.70924 * 7 6 5 39 39 H 1.08998 * 109.46827 * 244.71499 * 7 6 5 40 40 H 0.97000 * 119.99894 * 359.71837 * 10 8 7 41 41 H 1.08999 * 113.61440 * 203.66066 * 13 11 10 42 42 H 1.08996 * 113.61401 * 334.56787 * 13 11 10 43 43 H 1.07998 * 120.02317 * 180.25190 * 19 17 16 44 44 H 1.07995 * 119.99080 * 179.97438 * 22 20 19 45 45 H 1.08000 * 119.97356 * 179.97438 * 23 22 20 46 46 H 1.08999 * 113.61256 * 25.43033 * 24 11 10 47 47 H 1.08996 * 113.61858 * 156.33582 * 24 11 10 48 48 H 1.08000 * 120.05379 * 359.97218 * 28 27 26 49 49 H 1.08005 * 119.93911 * 180.29683 * 29 28 27 50 50 H 1.08001 * 119.87412 * 179.74780 * 30 29 28 51 51 H 1.07998 * 119.93831 * 180.02562 * 31 30 29 52 52 H 1.08000 * 120.05613 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7103 1.2304 5 6 2.4584 -0.1245 2.3277 6 7 2.7886 -1.0990 3.2024 7 6 3.3931 -0.9009 4.5221 8 6 2.5389 -1.5654 5.5708 9 8 1.5247 -2.1467 5.2478 10 7 2.8989 -1.5083 6.8684 11 6 2.0653 -2.1491 7.8885 12 1 1.4501 -2.9548 7.4877 13 6 2.8380 -2.5383 9.1600 14 6 2.5077 -1.1350 9.6955 15 1 3.2488 -0.3809 9.4303 16 6 2.1513 -1.1160 11.1595 17 6 2.9124 -0.3748 12.0474 18 9 3.9741 0.3317 11.6013 19 6 2.5819 -0.3536 13.3917 20 6 1.4969 -1.0816 13.8479 21 9 1.1757 -1.0652 15.1601 22 6 0.7401 -1.8265 12.9588 23 6 1.0683 -1.8434 11.6165 24 6 1.2855 -1.1524 8.7622 25 7 2.4470 -2.3317 2.6315 26 6 1.9301 -2.1027 1.4429 27 6 1.4329 -3.1303 0.4943 28 6 0.3265 -2.8630 -0.3093 29 6 -0.1278 -3.8199 -1.1941 30 6 0.5060 -5.0467 -1.2754 31 6 1.6010 -5.3195 -0.4756 32 6 2.0675 -4.3676 0.4082 33 1 -0.3933 0.4418 -0.7651 34 1 1.7923 -0.5138 -0.8900 35 1 1.5879 2.4586 -1.2243 36 1 1.5616 2.4680 1.2084 37 1 2.5936 0.9363 2.4781 38 1 3.4632 0.1663 4.7331 39 1 4.3907 -1.3398 4.5343 40 1 3.7098 -1.0430 7.1267 41 1 2.3695 -3.3431 9.7265 42 1 3.9023 -2.7019 8.9912 43 1 3.1726 0.2275 14.0843 44 1 -0.1064 -2.3950 13.3146 45 1 0.4779 -2.4248 10.9239 46 1 1.0967 -0.1972 8.2723 47 1 0.3927 -1.5783 9.2198 48 1 -0.1719 -1.9072 -0.2430 49 1 -0.9824 -3.6121 -1.8209 50 1 0.1447 -5.7941 -1.9662 51 1 2.0924 -6.2789 -0.5434 52 1 2.9229 -4.5815 1.0318 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_12622748.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:06:15 Heat of formation + Delta-G solvation = 19.479777 kcal Electronic energy + Delta-G solvation = -39298.897130 eV Core-core repulsion = 33869.131412 eV Total energy + Delta-G solvation = -5429.765719 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 426.154 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -50.09002 -50.06570 -42.48535 -41.54308 -40.28379 -39.74061 -38.72458 -37.85011 -34.90569 -34.55378 -32.41651 -32.00490 -31.84218 -31.58779 -31.27869 -28.80854 -26.76342 -26.33912 -25.76336 -24.45711 -24.05566 -23.47454 -22.91558 -22.07797 -21.46749 -20.80762 -20.30702 -19.36813 -18.59146 -18.45626 -18.37800 -18.17699 -17.61043 -17.18276 -17.07091 -16.86932 -16.66935 -16.58739 -16.38753 -16.30487 -15.94002 -15.81367 -15.61769 -15.51398 -15.24469 -15.13554 -15.03715 -14.71165 -14.47254 -14.32722 -14.19730 -14.01536 -13.80996 -13.66655 -13.63372 -13.58291 -13.49591 -13.26041 -12.85639 -12.77343 -12.58844 -12.38568 -12.14496 -12.08603 -11.85226 -11.76179 -11.46873 -11.36538 -11.29043 -10.65844 -10.30742 -10.19113 -10.10497 -9.85536 -9.74356 -9.62290 -9.28320 -4.85043 -0.15409 -0.06041 0.08642 0.49286 0.78398 1.31373 1.40873 1.44829 1.67560 1.69917 2.01331 2.04563 2.25188 2.79683 2.90661 3.27143 3.32649 3.42207 3.45715 3.55058 3.60082 3.62666 3.64996 3.75014 3.83746 3.89670 3.93867 4.05144 4.05232 4.11369 4.14658 4.14787 4.15938 4.31445 4.40961 4.54061 4.56984 4.63696 4.66868 4.70316 4.79023 4.80045 4.81884 4.87084 4.88202 4.88707 4.96974 5.02601 5.04645 5.07919 5.18953 5.23838 5.32343 5.53662 5.59201 5.63039 5.65738 5.69911 5.90210 6.07581 6.43192 6.59698 6.69632 7.14079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.053 4.053 3 Si 0.779 3.221 4 C -0.226 4.226 5 C 0.073 3.927 6 N -0.359 5.359 7 C 0.109 3.891 8 C 0.498 3.502 9 O -0.565 6.565 10 N -0.696 5.696 11 C 0.116 3.884 12 H 0.082 0.918 13 C -0.123 4.123 14 C -0.068 4.068 15 H 0.110 0.890 16 C -0.112 4.112 17 C 0.119 3.881 18 F -0.135 7.135 19 C -0.198 4.198 20 C 0.107 3.893 21 F -0.142 7.142 22 C -0.156 4.156 23 C -0.058 4.058 24 C -0.138 4.138 25 N -0.292 5.292 26 C 0.108 3.892 27 C -0.037 4.037 28 C -0.115 4.115 29 C -0.129 4.129 30 C -0.117 4.117 31 C -0.130 4.130 32 C -0.108 4.108 33 H 0.392 0.608 34 H 0.076 0.924 35 H -0.287 1.287 36 H -0.281 1.281 37 H 0.214 0.786 38 H 0.177 0.823 39 H 0.148 0.852 40 H 0.421 0.579 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.152 0.848 44 H 0.160 0.840 45 H 0.167 0.833 46 H 0.070 0.930 47 H 0.103 0.897 48 H 0.151 0.849 49 H 0.144 0.856 50 H 0.146 0.854 51 H 0.142 0.858 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.147 3.366 -1.033 6.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.161 4.161 3 Si 0.682 3.318 4 C -0.237 4.237 5 C -0.072 4.072 6 N -0.141 5.141 7 C -0.014 4.014 8 C 0.284 3.716 9 O -0.442 6.442 10 N -0.350 5.350 11 C 0.011 3.989 12 H 0.100 0.900 13 C -0.160 4.160 14 C -0.086 4.086 15 H 0.128 0.872 16 C -0.113 4.113 17 C 0.100 3.900 18 F -0.113 7.113 19 C -0.217 4.217 20 C 0.088 3.912 21 F -0.121 7.121 22 C -0.175 4.175 23 C -0.075 4.075 24 C -0.177 4.177 25 N -0.113 5.113 26 C -0.057 4.057 27 C -0.039 4.039 28 C -0.134 4.134 29 C -0.147 4.147 30 C -0.135 4.135 31 C -0.148 4.148 32 C -0.127 4.127 33 H 0.242 0.758 34 H 0.094 0.906 35 H -0.214 1.214 36 H -0.207 1.207 37 H 0.230 0.770 38 H 0.194 0.806 39 H 0.165 0.835 40 H 0.259 0.741 41 H 0.125 0.875 42 H 0.108 0.892 43 H 0.170 0.830 44 H 0.178 0.822 45 H 0.185 0.815 46 H 0.089 0.911 47 H 0.121 0.879 48 H 0.168 0.832 49 H 0.162 0.838 50 H 0.164 0.836 51 H 0.160 0.840 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.769 2.657 0.367 5.471 hybrid contribution -0.986 0.657 -0.243 1.209 sum 3.783 3.313 0.124 5.030 Atomic orbital electron populations 1.86530 1.19285 1.79713 1.50955 1.24353 0.83349 1.12080 0.96299 0.94092 0.89828 0.70543 0.77346 1.19605 1.12853 0.91844 0.99432 1.22742 0.98781 0.96530 0.89164 1.48093 1.48212 1.03568 1.14239 1.22015 0.97104 1.06316 0.75998 1.21108 0.86004 0.80253 0.84283 1.90833 1.27728 1.43968 1.81635 1.45448 1.28191 1.56532 1.04798 1.21795 0.93613 0.95915 0.87616 0.89988 1.23406 1.02161 0.96286 0.94184 1.21539 0.99296 0.99468 0.88276 0.87169 1.19970 0.96596 0.98657 0.96101 1.17265 0.86493 0.94589 0.91682 1.91504 1.53789 1.76461 1.89582 1.21181 1.00101 1.04514 0.95930 1.17564 0.95982 0.99351 0.78293 1.91527 1.92195 1.95177 1.33193 1.21503 1.01692 1.00893 0.93412 1.21047 0.95050 0.96648 0.94783 1.23568 0.97450 1.00344 0.96334 1.77665 1.20718 1.04150 1.08782 1.20908 0.98764 0.93669 0.92348 1.18041 0.97158 0.92539 0.96145 1.22007 0.95156 1.01563 0.94699 1.21419 1.00732 0.93625 0.98950 1.21601 0.95393 0.97464 0.99047 1.21355 0.97492 0.99742 0.96197 1.21314 1.00039 0.92761 0.98637 0.75777 0.90597 1.21414 1.20732 0.76963 0.80593 0.83469 0.74112 0.87495 0.89218 0.83024 0.82237 0.81533 0.91117 0.87876 0.83181 0.83820 0.83629 0.83978 0.86376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.91 10.08 -148.98 -1.50 -3.42 16 2 C -0.05 -0.09 2.00 71.23 0.14 0.06 16 3 Si 0.78 -2.77 30.79 68.60 2.11 -0.66 16 4 C -0.23 -1.46 5.37 -19.95 -0.11 -1.57 16 5 C 0.07 0.13 9.96 83.47 0.83 0.96 16 6 N -0.36 -1.54 3.40 -351.90 -1.20 -2.74 16 7 C 0.11 -0.63 6.99 85.63 0.60 -0.04 16 8 C 0.50 0.68 7.86 87.66 0.69 1.37 16 9 O -0.56 -8.12 15.30 -3.04 -0.05 -8.16 16 10 N -0.70 3.96 5.26 -440.03 -2.32 1.64 16 11 C 0.12 -0.42 4.32 45.52 0.20 -0.22 16 12 H 0.08 0.20 7.47 -2.38 -0.02 0.18 16 13 C -0.12 0.91 7.29 31.12 0.23 1.13 16 14 C -0.07 0.44 3.77 -11.01 -0.04 0.39 16 15 H 0.11 -0.81 7.45 -2.38 -0.02 -0.83 16 16 C -0.11 0.38 5.30 -19.82 -0.10 0.27 16 17 C 0.12 0.00 7.25 22.37 0.16 0.16 16 18 F -0.13 -0.17 16.36 44.97 0.74 0.56 16 19 C -0.20 -0.16 10.01 22.36 0.22 0.06 16 20 C 0.11 0.13 7.30 22.37 0.16 0.30 16 21 F -0.14 -0.63 17.27 44.97 0.78 0.15 16 22 C -0.16 0.44 10.03 22.32 0.22 0.66 16 23 C -0.06 0.29 8.61 22.26 0.19 0.48 16 24 C -0.14 0.70 7.25 31.12 0.23 0.92 16 25 N -0.29 -3.83 11.63 -48.15 -0.56 -4.39 16 26 C 0.11 1.33 6.74 42.53 0.29 1.62 16 27 C -0.04 -0.44 5.80 -20.04 -0.12 -0.55 16 28 C -0.12 -1.05 8.95 22.48 0.20 -0.85 16 29 C -0.13 -0.69 10.03 22.24 0.22 -0.47 16 30 C -0.12 -0.49 10.04 22.31 0.22 -0.27 16 31 C -0.13 -0.77 10.03 22.24 0.22 -0.55 16 32 C -0.11 -1.08 9.75 22.48 0.22 -0.86 16 33 H 0.39 -2.00 8.74 -74.06 -0.65 -2.64 16 34 H 0.08 0.04 7.84 -2.39 -0.02 0.02 16 35 H -0.29 -0.28 7.11 99.48 0.71 0.42 16 36 H -0.28 -0.21 7.03 99.48 0.70 0.49 16 37 H 0.21 -1.47 6.36 -2.91 -0.02 -1.49 16 38 H 0.18 -2.80 8.07 -2.38 -0.02 -2.81 16 39 H 0.15 -1.67 8.14 -2.39 -0.02 -1.68 16 40 H 0.42 -5.51 8.70 -92.71 -0.81 -6.32 16 41 H 0.11 -0.87 7.72 -2.39 -0.02 -0.89 16 42 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 43 H 0.15 -0.12 8.06 -2.91 -0.02 -0.14 16 44 H 0.16 -1.01 8.06 -2.91 -0.02 -1.03 16 45 H 0.17 -1.62 6.66 -2.91 -0.02 -1.64 16 46 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 47 H 0.10 -0.64 6.32 -2.39 -0.02 -0.66 16 48 H 0.15 1.28 4.52 -2.91 -0.01 1.26 16 49 H 0.14 0.05 8.06 -2.91 -0.02 0.03 16 50 H 0.15 -0.16 8.06 -2.91 -0.02 -0.19 16 51 H 0.14 0.17 8.06 -2.91 -0.02 0.15 16 52 H 0.12 1.16 8.06 -2.91 -0.02 1.14 16 Total: 0.00 -34.15 441.49 2.48 -31.67 By element: Atomic # 1 Polarization: -17.27 SS G_CDS: -0.40 Total: -17.68 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 4.88 Total: 3.02 kcal Atomic # 7 Polarization: -1.41 SS G_CDS: -4.07 Total: -5.49 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -1.55 Total: -11.58 kcal Atomic # 9 Polarization: -0.80 SS G_CDS: 1.51 Total: 0.71 kcal Atomic # 14 Polarization: -2.77 SS G_CDS: 2.11 Total: -0.66 kcal Total: -34.15 2.48 -31.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_12622748.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.149 kcal (2) G-P(sol) polarization free energy of solvation -34.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds