Wall clock time and date at job start Sun Mar 7 2021 00:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86295 * 109.46889 * 2 1 4 4 C 1.50705 * 109.46956 * 120.00060 * 2 1 3 5 5 C 1.34828 * 125.65410 * 64.99909 * 4 2 1 6 6 C 1.40800 * 107.04950 * 179.97438 * 5 4 2 7 7 C 1.36105 * 106.73149 * 0.02562 * 6 5 4 8 8 C 1.47564 * 125.93937 * 180.02562 * 7 6 5 9 9 C 1.39923 * 119.96138 * 359.71979 * 8 7 6 10 10 C 1.36423 * 120.28195 * 179.75915 * 9 8 7 11 11 C 1.39874 * 120.18615 * 0.52067 * 10 9 8 12 12 C 1.47290 * 120.05000 * 179.71644 * 11 10 9 13 13 O 1.21627 * 120.00107 * 180.02562 * 12 11 10 14 14 N 1.34779 * 120.00139 * 0.02562 * 12 11 10 15 15 C 1.46490 * 120.00472 * 180.02562 * 14 12 11 16 16 H 1.09006 * 112.84751 * 336.19609 * 15 14 12 17 17 C 1.53777 * 113.61936 * 107.50195 * 15 14 12 18 18 C 1.53781 * 87.08180 * 89.11568 * 17 15 14 19 19 H 1.08996 * 113.69101 * 270.87615 * 18 17 15 20 20 C 1.50702 * 113.61337 * 139.98427 * 18 17 15 21 21 C 1.38451 * 119.98792 * 142.23219 * 20 18 17 22 22 F 1.35098 * 120.01007 * 0.02562 * 21 20 18 23 23 C 1.38440 * 119.97680 * 179.76999 * 21 20 18 24 24 C 1.38401 * 119.94498 * 0.47974 * 23 21 20 25 25 F 1.35100 * 120.00916 * 179.79710 * 24 23 21 26 26 C 1.38493 * 119.97769 * 359.76659 * 24 23 21 27 27 C 1.38190 * 120.02478 * 0.02562 * 26 24 23 28 28 C 1.53780 * 87.07967 * 25.43396 * 18 17 15 29 29 C 1.40413 * 119.90504 * 359.74039 * 11 10 9 30 30 O 1.35679 * 120.13621 * 180.02562 * 29 11 10 31 31 C 1.38267 * 119.72713 * 359.97438 * 29 11 10 32 32 O 1.34228 * 125.65121 * 244.97633 * 4 2 1 33 33 H 0.96694 * 113.99914 * 300.00079 * 1 2 3 34 34 H 1.08999 * 109.46983 * 239.99844 * 2 1 3 35 35 H 1.48509 * 109.99936 * 178.67953 * 3 2 1 36 36 H 1.48498 * 110.00184 * 299.99559 * 3 2 1 37 37 H 1.08003 * 126.47419 * 359.97438 * 5 4 2 38 38 H 1.08000 * 126.63150 * 180.26218 * 6 5 4 39 39 H 1.07997 * 119.85733 * 0.02890 * 9 8 7 40 40 H 1.07996 * 119.91114 * 180.28355 * 10 9 8 41 41 H 0.96999 * 119.99453 * 0.02562 * 14 12 11 42 42 H 1.08994 * 113.61948 * 203.66805 * 17 15 14 43 43 H 1.08998 * 113.61188 * 334.56973 * 17 15 14 44 44 H 1.07991 * 120.02882 * 180.25214 * 23 21 20 45 45 H 1.07997 * 119.98961 * 179.97438 * 26 24 23 46 46 H 1.08002 * 119.97460 * 179.97438 * 27 26 24 47 47 H 1.09001 * 113.61703 * 220.01475 * 28 18 17 48 48 H 1.09008 * 113.61127 * 89.11263 * 28 18 17 49 49 H 0.96699 * 113.99922 * 269.98209 * 30 29 11 50 50 H 1.08002 * 120.09562 * 179.97438 * 31 29 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7567 -2.0180 1.5094 6 6 2.3810 -2.2630 2.7474 7 6 2.9080 -1.0784 3.1617 8 6 3.6579 -0.8544 4.4127 9 6 3.8748 -1.9167 5.2972 10 6 4.5714 -1.7181 6.4532 11 6 5.0646 -0.4476 6.7676 12 6 5.8110 -0.2351 8.0196 13 8 6.2391 0.8702 8.2923 14 7 6.0195 -1.2655 8.8629 15 6 6.7613 -1.0542 10.1084 16 1 7.4267 -0.1920 10.0636 17 6 5.8765 -1.0872 11.3656 18 6 6.1307 -2.6032 11.4090 19 1 5.4069 -3.1851 10.8385 20 6 6.3462 -3.1396 12.8008 21 6 5.8351 -4.3774 13.1522 22 9 5.1439 -5.1046 12.2475 23 6 6.0373 -4.8720 14.4293 24 6 6.7416 -4.1238 15.3564 25 9 6.9361 -4.6035 16.6044 26 6 7.2475 -2.8836 15.0043 27 6 7.0488 -2.3929 13.7279 28 6 7.4371 -2.3265 10.6463 29 6 4.8469 0.6253 5.8883 30 8 5.3237 1.8596 6.1884 31 6 4.1454 0.4184 4.7149 32 8 2.6271 -0.1465 2.2303 33 1 -0.3933 0.4417 0.7650 34 1 1.7923 -0.5139 -0.8900 35 1 3.5346 1.7703 0.0322 36 1 1.5615 2.4678 -1.2085 37 1 1.2363 -2.7408 0.8985 38 1 2.4349 -3.2088 3.2660 39 1 3.4928 -2.8991 5.0616 40 1 4.7392 -2.5433 7.1294 41 1 5.6784 -2.1471 8.6452 42 1 6.3013 -0.5488 12.2128 43 1 4.8361 -0.8242 11.1744 44 1 5.6425 -5.8392 14.7030 45 1 7.7968 -2.2995 15.7277 46 1 7.4433 -1.4254 13.4542 47 1 7.6566 -3.0641 9.8744 48 1 8.2886 -2.1269 11.2970 49 1 4.7073 2.4072 6.6935 50 1 3.9741 1.2395 4.0344 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_12807986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:06:27 Heat of formation + Delta-G solvation = -87.333989 kcal Electronic energy + Delta-G solvation = -39136.673735 eV Core-core repulsion = 33506.838899 eV Total energy + Delta-G solvation = -5629.834835 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 428.131 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -50.05982 -50.03534 -43.74784 -41.81677 -40.93298 -39.67939 -38.54868 -38.06679 -37.80688 -34.81199 -34.19536 -33.27460 -31.87777 -31.50964 -31.21830 -30.37231 -27.23196 -26.70481 -26.11367 -24.63559 -24.15789 -24.03678 -22.96613 -22.42116 -22.06859 -21.37250 -20.31849 -19.66849 -19.33718 -18.83074 -18.52286 -18.18858 -17.72791 -17.48114 -17.30307 -17.04385 -17.03747 -16.75022 -16.61973 -16.36432 -16.28262 -16.08544 -15.98442 -15.74318 -15.55358 -15.46545 -15.17764 -15.05101 -14.61245 -14.39870 -14.29144 -14.02007 -13.96856 -13.87781 -13.73339 -13.60211 -13.54532 -13.51609 -13.39447 -12.82830 -12.82156 -12.70465 -12.54837 -12.26604 -12.03369 -11.88698 -11.70720 -11.29195 -11.13367 -10.93090 -10.73628 -10.58377 -10.13611 -10.05945 -9.94374 -9.58452 -9.01675 -5.06000 -0.79196 -0.11563 -0.02234 0.15478 0.64152 1.12995 1.39225 1.45696 1.74326 1.86878 1.92063 2.02634 2.29224 2.64708 2.83374 3.02312 3.28978 3.31326 3.41637 3.45971 3.50186 3.60976 3.63188 3.69566 3.71051 3.87321 3.88874 3.95455 3.98440 4.00797 4.09370 4.18054 4.22959 4.31126 4.40897 4.60498 4.63716 4.70029 4.72324 4.75901 4.78736 4.84786 4.85559 4.89822 4.92405 4.92742 5.02638 5.06569 5.09196 5.10114 5.14533 5.22280 5.28152 5.42031 5.53407 5.59991 5.73756 5.96296 6.46796 6.59778 6.72587 7.16907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.024 4.024 3 Si 0.770 3.230 4 C -0.053 4.053 5 C -0.184 4.184 6 C -0.174 4.174 7 C 0.006 3.994 8 C 0.025 3.975 9 C -0.111 4.111 10 C -0.052 4.052 11 C -0.179 4.179 12 C 0.560 3.440 13 O -0.560 6.560 14 N -0.698 5.698 15 C 0.115 3.885 16 H 0.092 0.908 17 C -0.137 4.137 18 C -0.071 4.071 19 H 0.106 0.894 20 C -0.111 4.111 21 C 0.117 3.883 22 F -0.136 7.136 23 C -0.199 4.199 24 C 0.106 3.894 25 F -0.143 7.143 26 C -0.156 4.156 27 C -0.056 4.056 28 C -0.124 4.124 29 C 0.162 3.838 30 O -0.495 6.495 31 C -0.152 4.152 32 O -0.174 6.174 33 H 0.399 0.601 34 H 0.138 0.862 35 H -0.298 1.298 36 H -0.277 1.277 37 H 0.165 0.835 38 H 0.181 0.819 39 H 0.167 0.833 40 H 0.170 0.830 41 H 0.413 0.587 42 H 0.109 0.891 43 H 0.070 0.930 44 H 0.150 0.850 45 H 0.161 0.839 46 H 0.171 0.829 47 H 0.086 0.914 48 H 0.111 0.889 49 H 0.409 0.591 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.533 -2.528 1.747 3.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.135 4.135 3 Si 0.675 3.325 4 C -0.103 4.103 5 C -0.203 4.203 6 C -0.192 4.192 7 C -0.044 4.044 8 C 0.025 3.975 9 C -0.129 4.129 10 C -0.070 4.070 11 C -0.183 4.183 12 C 0.348 3.652 13 O -0.439 6.439 14 N -0.350 5.350 15 C 0.010 3.990 16 H 0.110 0.890 17 C -0.175 4.175 18 C -0.089 4.089 19 H 0.124 0.876 20 C -0.112 4.112 21 C 0.098 3.902 22 F -0.115 7.115 23 C -0.218 4.218 24 C 0.087 3.913 25 F -0.122 7.122 26 C -0.174 4.174 27 C -0.074 4.074 28 C -0.162 4.162 29 C 0.116 3.884 30 O -0.308 6.308 31 C -0.171 4.171 32 O -0.071 6.071 33 H 0.250 0.750 34 H 0.155 0.845 35 H -0.225 1.225 36 H -0.203 1.203 37 H 0.183 0.817 38 H 0.198 0.802 39 H 0.185 0.815 40 H 0.187 0.813 41 H 0.251 0.749 42 H 0.127 0.873 43 H 0.089 0.911 44 H 0.168 0.832 45 H 0.179 0.821 46 H 0.188 0.812 47 H 0.104 0.896 48 H 0.130 0.870 49 H 0.270 0.730 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.115 -1.378 0.725 1.915 hybrid contribution -0.594 -1.216 0.086 1.356 sum -1.709 -2.594 0.810 3.210 Atomic orbital electron populations 1.86533 1.15853 1.82087 1.50343 1.24414 0.85434 1.10907 0.92727 0.93372 0.78039 0.75782 0.85332 1.23226 1.00476 0.94322 0.92287 1.21831 1.04189 0.95799 0.98490 1.22236 1.00919 0.98963 0.97103 1.20578 1.04506 0.87920 0.91348 1.17941 0.95477 0.93969 0.90160 1.21037 0.99408 0.99319 0.93106 1.21145 0.93831 0.95226 0.96838 1.20521 1.05568 0.96036 0.96150 1.18183 0.79252 0.84398 0.83349 1.90824 1.51494 1.25276 1.76271 1.45489 1.56737 1.12257 1.20567 1.21866 0.94325 0.99765 0.83062 0.88980 1.23581 1.01120 0.94511 0.98323 1.21553 0.99518 0.96660 0.91197 0.87598 1.19974 1.00168 0.93032 0.98023 1.17290 0.95576 0.90884 0.86467 1.91501 1.76891 1.76989 1.66087 1.21168 1.04482 1.03214 0.92966 1.17578 0.99744 0.94210 0.79764 1.91524 1.93374 1.88374 1.38887 1.21514 1.02311 0.94558 0.99037 1.21074 0.95228 1.00413 0.90646 1.23434 0.96744 0.96302 0.99725 1.18471 0.92104 0.85783 0.92069 1.84732 1.45714 1.23534 1.76798 1.21590 0.99399 0.98089 0.97983 1.83919 1.57916 1.38481 1.26811 0.74984 0.84504 1.22473 1.20303 0.81735 0.80175 0.81523 0.81299 0.74872 0.87275 0.91140 0.83187 0.82141 0.81152 0.89560 0.87038 0.73029 0.84160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.07 12.88 -148.98 -1.92 -0.84 16 2 C -0.02 0.04 2.98 71.24 0.21 0.25 16 3 Si 0.77 -0.78 32.11 68.60 2.20 1.43 16 4 C -0.05 -0.04 6.21 24.90 0.15 0.12 16 5 C -0.18 0.04 10.78 22.11 0.24 0.27 16 6 C -0.17 0.28 10.26 22.40 0.23 0.51 16 7 C 0.01 0.01 7.02 24.24 0.17 0.18 16 8 C 0.03 0.00 5.87 -20.08 -0.12 -0.12 16 9 C -0.11 0.60 9.48 22.25 0.21 0.81 16 10 C -0.05 0.30 9.47 22.24 0.21 0.51 16 11 C -0.18 -0.18 5.89 -19.97 -0.12 -0.30 16 12 C 0.56 1.97 7.75 86.62 0.67 2.64 16 13 O -0.56 -6.58 14.74 16.87 0.25 -6.33 16 14 N -0.70 2.56 5.21 -443.44 -2.31 0.25 16 15 C 0.12 -0.48 4.32 45.52 0.20 -0.28 16 16 H 0.09 0.01 7.46 -2.38 -0.02 -0.01 16 17 C -0.14 0.83 7.25 31.12 0.23 1.05 16 18 C -0.07 0.47 3.78 -11.01 -0.04 0.43 16 19 H 0.11 -0.73 7.44 -2.39 -0.02 -0.75 16 20 C -0.11 0.44 5.29 -19.81 -0.10 0.33 16 21 C 0.12 -0.02 7.24 22.37 0.16 0.14 16 22 F -0.14 -0.18 16.36 44.97 0.74 0.55 16 23 C -0.20 -0.11 10.01 22.36 0.22 0.11 16 24 C 0.11 0.08 7.30 22.37 0.16 0.24 16 25 F -0.14 -0.57 17.27 44.97 0.78 0.20 16 26 C -0.16 0.58 10.03 22.32 0.22 0.80 16 27 C -0.06 0.35 8.61 22.26 0.19 0.54 16 28 C -0.12 0.97 7.29 31.12 0.23 1.20 16 29 C 0.16 0.63 6.71 22.81 0.15 0.79 16 30 O -0.49 -3.07 11.56 -68.98 -0.80 -3.87 16 31 C -0.15 -0.33 9.65 22.61 0.22 -0.12 16 32 O -0.17 -0.45 8.79 -5.92 -0.05 -0.51 16 33 H 0.40 -3.83 8.70 -74.06 -0.64 -4.47 16 34 H 0.14 -0.34 7.96 -2.39 -0.02 -0.35 16 35 H -0.30 -1.94 7.11 99.48 0.71 -1.23 16 36 H -0.28 -1.13 7.11 99.48 0.71 -0.42 16 37 H 0.17 -0.44 8.06 -2.91 -0.02 -0.47 16 38 H 0.18 -1.37 7.24 -2.91 -0.02 -1.39 16 39 H 0.17 -1.88 6.95 -2.91 -0.02 -1.90 16 40 H 0.17 -2.24 6.38 -2.91 -0.02 -2.26 16 41 H 0.41 -3.96 6.71 -92.71 -0.62 -4.58 16 42 H 0.11 -0.90 6.31 -2.39 -0.02 -0.92 16 43 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 44 H 0.15 -0.12 8.06 -2.92 -0.02 -0.15 16 45 H 0.16 -1.18 8.06 -2.91 -0.02 -1.20 16 46 H 0.17 -1.95 6.66 -2.91 -0.02 -1.97 16 47 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 48 H 0.11 -1.05 7.72 -2.38 -0.02 -1.07 16 49 H 0.41 -0.49 9.06 -74.06 -0.67 -1.16 16 50 H 0.14 0.25 7.90 -2.91 -0.02 0.23 16 Total: 0.00 -25.91 433.26 1.76 -24.15 By element: Atomic # 1 Polarization: -24.30 SS G_CDS: -0.82 Total: -25.13 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 3.70 Total: 10.10 kcal Atomic # 7 Polarization: 2.56 SS G_CDS: -2.31 Total: 0.25 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -2.52 Total: -11.55 kcal Atomic # 9 Polarization: -0.76 SS G_CDS: 1.51 Total: 0.75 kcal Atomic # 14 Polarization: -0.78 SS G_CDS: 2.20 Total: 1.43 kcal Total: -25.91 1.76 -24.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_12807986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.186 kcal (2) G-P(sol) polarization free energy of solvation -25.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds