Wall clock time and date at job start Sun Mar 7 2021 00:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39287 * 121.03321 * 2 1 4 4 C 1.46493 * 134.19949 * 359.34609 * 3 2 1 5 5 C 1.50700 * 126.60201 * 0.72073 * 4 3 2 6 6 O 1.42900 * 109.47068 * 284.71460 * 5 4 3 7 7 Si 1.86296 * 109.47192 * 164.71125 * 5 4 3 8 8 C 1.34182 * 106.80030 * 180.46093 * 4 3 2 9 9 N 1.36943 * 109.95192 * 0.22564 * 8 4 3 10 10 C 1.37151 * 110.11420 * 359.97438 * 9 8 4 11 11 N 1.32826 * 132.96441 * 180.02562 * 10 9 8 12 12 C 1.31305 * 121.89134 * 180.02562 * 11 10 9 13 13 C 1.39749 * 121.02689 * 179.73873 * 2 1 3 14 14 C 1.47666 * 120.45514 * 359.97438 * 13 2 1 15 15 O 1.21574 * 119.99878 * 353.99765 * 14 13 2 16 16 N 1.34780 * 119.99900 * 174.00040 * 14 13 2 17 17 C 1.46503 * 119.99764 * 179.97438 * 16 14 13 18 18 H 1.08997 * 112.85095 * 23.79991 * 17 16 14 19 19 C 1.53774 * 113.61299 * 154.99945 * 17 16 14 20 20 C 1.53783 * 87.08145 * 89.11690 * 19 17 16 21 21 H 1.09006 * 113.61050 * 270.79776 * 20 19 17 22 22 C 1.50697 * 113.61644 * 139.98169 * 20 19 17 23 23 C 1.38450 * 119.98872 * 119.71689 * 22 20 19 24 24 F 1.35104 * 120.01533 * 0.02949 * 23 22 20 25 25 C 1.38444 * 119.97602 * 179.76552 * 23 22 20 26 26 C 1.38397 * 119.94542 * 0.49102 * 25 23 22 27 27 F 1.35108 * 120.01077 * 179.78778 * 26 25 23 28 28 C 1.38490 * 119.97917 * 359.76789 * 26 25 23 29 29 C 1.38189 * 120.02305 * 359.97438 * 28 26 25 30 30 C 1.53778 * 87.08143 * 25.43015 * 20 19 17 31 31 H 1.09003 * 109.47134 * 263.96826 * 1 2 3 32 32 H 1.09000 * 109.47233 * 23.96099 * 1 2 3 33 33 H 1.09001 * 109.47650 * 143.96784 * 1 2 3 34 34 H 1.09003 * 109.46620 * 44.71281 * 5 4 3 35 35 H 0.96700 * 113.99406 * 180.02562 * 6 5 4 36 36 H 1.48498 * 110.00346 * 60.00092 * 7 5 4 37 37 H 1.48502 * 110.00021 * 181.31970 * 7 5 4 38 38 H 1.07996 * 125.02667 * 180.23167 * 8 4 3 39 39 H 0.96997 * 124.94520 * 180.02562 * 9 8 4 40 40 H 1.08007 * 119.31033 * 179.97438 * 12 11 10 41 41 H 0.96997 * 120.00311 * 0.02562 * 16 14 13 42 42 H 1.09007 * 113.61372 * 203.65895 * 19 17 16 43 43 H 1.08994 * 113.61864 * 334.47876 * 19 17 16 44 44 H 1.07997 * 120.02777 * 180.25855 * 25 23 22 45 45 H 1.07997 * 119.98923 * 179.97438 * 28 26 25 46 46 H 1.07997 * 119.97582 * 180.02562 * 29 28 26 47 47 H 1.09003 * 113.61385 * 220.01897 * 30 20 19 48 48 H 1.09005 * 113.61126 * 89.12163 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1935 0.0000 4 6 1.8517 2.6100 -0.0120 5 6 0.4528 3.1706 -0.0137 6 8 -0.1197 3.0183 -1.3141 7 14 0.5077 4.9784 0.4328 8 6 2.9950 3.3124 -0.0153 9 7 4.0670 2.4603 -0.0114 10 6 3.6348 1.1586 -0.0049 11 7 4.2720 -0.0068 0.0011 12 6 3.6266 -1.1503 0.0063 13 6 2.2273 -1.1975 0.0055 14 6 1.5223 -2.4950 0.0119 15 8 0.3121 -2.5287 0.1227 16 7 2.2205 -3.6419 -0.1048 17 6 1.5211 -4.9292 -0.0978 18 1 0.4784 -4.8461 -0.4045 19 6 2.2876 -6.0506 -0.8185 20 6 2.9621 -6.3494 0.5309 21 1 3.8772 -5.7809 0.6969 22 6 3.1285 -7.8209 0.8100 23 6 4.3937 -8.3511 0.9969 24 9 5.4791 -7.5494 0.9297 25 6 4.5459 -9.7021 1.2581 26 6 3.4336 -10.5230 1.3219 27 9 3.5809 -11.8424 1.5725 28 6 2.1693 -9.9915 1.1293 29 6 2.0182 -8.6419 0.8740 30 6 1.7217 -5.7322 1.1983 31 1 -0.3633 -0.1080 1.0220 32 1 -0.3634 0.9391 -0.4173 33 1 -0.3634 -0.8310 -0.6045 34 1 -0.1543 2.6344 0.7157 35 1 -1.0218 3.3586 -1.3890 36 1 1.3326 5.7206 -0.5540 37 1 -0.8685 5.5354 0.4657 38 1 3.0602 4.3904 -0.0201 39 1 4.9966 2.7369 -0.0124 40 1 4.1868 -2.0736 0.0107 41 1 3.1861 -3.6151 -0.1928 42 1 1.6476 -6.8579 -1.1748 43 1 2.9763 -5.6883 -1.5816 44 1 5.5322 -10.1158 1.4082 45 1 1.3012 -10.6320 1.1787 46 1 1.0319 -8.2281 0.7243 47 1 1.9546 -5.1125 2.0642 48 1 0.9270 -6.4523 1.3933 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13428180_12890568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:06:33 Heat of formation + Delta-G solvation = -21.724981 kcal Electronic energy + Delta-G solvation = -36293.722846 eV Core-core repulsion = 31145.934115 eV Total energy + Delta-G solvation = -5147.788732 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.139 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -50.02988 -49.98207 -42.81616 -41.60829 -40.39936 -39.04487 -38.40785 -37.84465 -35.15270 -34.52516 -32.11957 -31.96685 -31.70750 -30.65532 -28.77211 -26.86597 -26.66562 -26.15532 -24.75149 -24.28671 -23.88164 -22.86373 -21.95772 -20.41083 -20.32761 -19.36378 -19.19671 -18.70057 -18.51686 -18.21314 -17.60505 -17.40017 -17.01611 -16.96371 -16.76431 -16.46134 -16.37632 -16.30094 -15.80133 -15.77242 -15.48292 -15.39161 -15.28525 -15.12901 -14.80853 -14.69756 -14.18422 -14.10847 -13.92919 -13.78233 -13.66354 -13.60520 -13.52379 -13.46655 -13.22754 -12.89776 -12.76884 -12.68075 -12.62212 -12.13398 -12.02133 -11.79982 -11.40491 -11.05931 -10.98449 -10.46923 -10.23362 -10.16932 -10.07636 -9.62994 -9.55864 -9.10906 -5.02681 -0.21621 -0.15866 -0.08588 -0.02451 1.21228 1.38481 1.51080 1.64495 1.88379 1.91714 2.03379 2.22474 2.80198 2.85769 3.21183 3.27243 3.34283 3.38110 3.41846 3.54556 3.57399 3.58456 3.67892 3.74752 3.77247 3.80558 3.83601 3.96705 4.08625 4.09483 4.14379 4.30692 4.46952 4.51394 4.56711 4.65391 4.67812 4.71637 4.74680 4.78220 4.80251 4.85696 4.90179 4.93066 4.98803 5.00271 5.06207 5.18793 5.23754 5.38734 5.49137 5.59407 5.67494 5.79630 6.13129 6.45031 6.45310 6.87996 7.22991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.086 3.914 3 C -0.148 4.148 4 C -0.133 4.133 5 C -0.044 4.044 6 O -0.534 6.534 7 Si 0.682 3.318 8 C 0.073 3.927 9 N -0.569 5.569 10 C 0.309 3.691 11 N -0.502 5.502 12 C 0.180 3.820 13 C -0.235 4.235 14 C 0.577 3.423 15 O -0.528 6.528 16 N -0.712 5.712 17 C 0.123 3.877 18 H 0.110 0.890 19 C -0.135 4.135 20 C -0.076 4.076 21 H 0.104 0.896 22 C -0.114 4.114 23 C 0.133 3.867 24 F -0.128 7.128 25 C -0.190 4.190 26 C 0.127 3.873 27 F -0.130 7.130 28 C -0.159 4.159 29 C -0.060 4.060 30 C -0.142 4.142 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.379 0.621 36 H -0.252 1.252 37 H -0.258 1.258 38 H 0.184 0.816 39 H 0.426 0.574 40 H 0.162 0.838 41 H 0.400 0.600 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.149 0.851 45 H 0.144 0.856 46 H 0.146 0.854 47 H 0.078 0.922 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.216 2.597 1.644 3.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.077 3.923 3 C -0.155 4.155 4 C -0.141 4.141 5 C -0.154 4.154 6 O -0.341 6.341 7 Si 0.582 3.418 8 C -0.054 4.054 9 N -0.175 5.175 10 C 0.075 3.925 11 N -0.215 5.215 12 C 0.011 3.989 13 C -0.242 4.242 14 C 0.365 3.635 15 O -0.405 6.405 16 N -0.364 5.364 17 C 0.018 3.982 18 H 0.128 0.872 19 C -0.173 4.173 20 C -0.094 4.094 21 H 0.122 0.878 22 C -0.115 4.115 23 C 0.114 3.886 24 F -0.107 7.107 25 C -0.210 4.210 26 C 0.107 3.893 27 F -0.109 7.109 28 C -0.178 4.178 29 C -0.078 4.078 30 C -0.181 4.181 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.227 0.773 36 H -0.177 1.177 37 H -0.182 1.182 38 H 0.201 0.799 39 H 0.265 0.735 40 H 0.179 0.821 41 H 0.235 0.765 42 H 0.119 0.881 43 H 0.099 0.901 44 H 0.167 0.833 45 H 0.162 0.838 46 H 0.163 0.837 47 H 0.097 0.903 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.382 3.286 1.350 3.573 hybrid contribution -0.205 -0.465 -0.725 0.885 sum 0.177 2.820 0.626 2.894 Atomic orbital electron populations 1.21230 0.88989 1.04614 1.03806 1.19877 0.97081 0.89153 0.86167 1.19462 0.92850 0.93489 1.09706 1.19417 0.93124 0.90585 1.10954 1.24108 0.92107 1.11328 0.87881 1.86643 1.33714 1.83617 1.30121 0.95189 0.83440 0.74033 0.89153 1.21727 0.85005 0.95949 1.02714 1.41490 1.09593 1.02678 1.63689 1.18477 0.89279 0.85902 0.98793 1.66435 1.40535 0.95988 1.18576 1.22495 0.90061 0.94449 0.91869 1.20391 0.94758 0.93630 1.15427 1.17855 0.86788 0.83153 0.75719 1.90753 1.13532 1.87008 1.49190 1.45569 1.10552 1.05015 1.75282 1.21807 0.98069 0.81859 0.96490 0.87215 1.23455 0.99566 0.98270 0.96054 1.21574 0.99550 0.90707 0.97610 0.87793 1.19807 0.91442 0.96825 1.03447 1.17145 0.83028 0.87586 1.00863 1.91532 1.52874 1.72740 1.93537 1.21081 1.00307 0.92655 1.06921 1.17342 0.93660 0.78089 1.00173 1.91561 1.96546 1.31436 1.91339 1.21255 0.96380 0.96523 1.03647 1.20778 0.98797 0.91859 0.96360 1.23590 0.97116 0.99274 0.98122 0.89942 0.90420 0.88349 0.90468 0.77348 1.17700 1.18213 0.79910 0.73504 0.82135 0.76454 0.88090 0.90149 0.83333 0.83774 0.83655 0.90297 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.32 8.46 36.00 0.30 -0.01 16 2 C 0.09 0.27 5.98 -103.67 -0.62 -0.35 16 3 C -0.15 -0.44 6.16 -105.13 -0.65 -1.09 16 4 C -0.13 -0.15 5.61 -102.73 -0.58 -0.72 16 5 C -0.04 0.02 1.87 36.01 0.07 0.09 16 6 O -0.53 -0.39 11.64 -35.23 -0.41 -0.80 16 7 Si 0.68 -1.46 30.80 -169.99 -5.24 -6.70 16 8 C 0.07 -0.06 10.44 -16.70 -0.17 -0.24 16 9 N -0.57 0.16 6.04 -12.12 -0.07 0.08 16 10 C 0.31 0.82 8.42 -155.71 -1.31 -0.49 16 11 N -0.50 -1.39 10.37 -11.96 -0.12 -1.52 16 12 C 0.18 0.19 10.67 -17.11 -0.18 0.01 16 13 C -0.23 -0.50 5.89 -104.82 -0.62 -1.12 16 14 C 0.58 1.14 7.72 -12.41 -0.10 1.05 16 15 O -0.53 -2.47 13.09 5.30 0.07 -2.40 16 16 N -0.71 0.73 5.21 -54.02 -0.28 0.45 16 17 C 0.12 -0.19 4.32 -67.12 -0.29 -0.48 16 18 H 0.11 -0.03 7.46 -51.93 -0.39 -0.42 16 19 C -0.14 0.38 7.29 -25.92 -0.19 0.20 16 20 C -0.08 0.17 3.78 -90.96 -0.34 -0.18 16 21 H 0.10 -0.22 7.45 -51.93 -0.39 -0.61 16 22 C -0.11 0.12 5.29 -104.55 -0.55 -0.44 16 23 C 0.13 0.06 7.24 -39.43 -0.29 -0.23 16 24 F -0.13 -0.17 16.36 2.25 0.04 -0.13 16 25 C -0.19 -0.08 10.01 -39.45 -0.39 -0.48 16 26 C 0.13 0.07 7.30 -39.43 -0.29 -0.21 16 27 F -0.13 -0.25 17.27 2.25 0.04 -0.21 16 28 C -0.16 0.18 10.03 -39.51 -0.40 -0.22 16 29 C -0.06 0.12 8.61 -39.60 -0.34 -0.22 16 30 C -0.14 0.31 7.25 -25.92 -0.19 0.12 16 31 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.08 0.14 4.79 -51.93 -0.25 -0.11 16 33 H 0.10 0.37 5.96 -51.93 -0.31 0.06 16 34 H 0.08 -0.12 7.13 -51.93 -0.37 -0.49 16 35 H 0.38 -1.21 8.74 45.56 0.40 -0.81 16 36 H -0.25 -0.04 7.04 56.52 0.40 0.35 16 37 H -0.26 -0.04 7.11 56.52 0.40 0.36 16 38 H 0.18 -0.72 6.31 -52.49 -0.33 -1.05 16 39 H 0.43 -1.27 8.96 -40.82 -0.37 -1.64 16 40 H 0.16 -0.40 6.43 -52.48 -0.34 -0.74 16 41 H 0.40 -1.27 6.78 -40.82 -0.28 -1.55 16 42 H 0.10 -0.35 7.72 -51.92 -0.40 -0.75 16 43 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 44 H 0.15 -0.08 8.06 -52.49 -0.42 -0.51 16 45 H 0.14 -0.40 8.06 -52.49 -0.42 -0.82 16 46 H 0.15 -0.61 6.65 -52.49 -0.35 -0.96 16 47 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 48 H 0.10 -0.30 6.31 -51.93 -0.33 -0.63 16 LS Contribution 398.50 15.07 6.01 6.01 Total: 0.00 -9.87 398.50 -12.10 -21.97 By element: Atomic # 1 Polarization: -6.73 SS G_CDS: -5.01 Total: -11.74 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -7.12 Total: -5.02 kcal Atomic # 7 Polarization: -0.51 SS G_CDS: -0.48 Total: -0.98 kcal Atomic # 8 Polarization: -2.86 SS G_CDS: -0.34 Total: -3.20 kcal Atomic # 9 Polarization: -0.42 SS G_CDS: 0.08 Total: -0.34 kcal Atomic # 14 Polarization: -1.46 SS G_CDS: -5.24 Total: -6.70 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -9.87 -12.10 -21.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_12890568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.245 kcal (2) G-P(sol) polarization free energy of solvation -9.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds