Wall clock time and date at job start Sun Mar 7 2021 00:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39287 * 121.03321 * 2 1 4 4 C 1.46493 * 134.19949 * 359.34609 * 3 2 1 5 5 C 1.50700 * 126.60201 * 0.72073 * 4 3 2 6 6 O 1.42900 * 109.47068 * 284.71460 * 5 4 3 7 7 Si 1.86296 * 109.47192 * 164.71125 * 5 4 3 8 8 C 1.34182 * 106.80030 * 180.46093 * 4 3 2 9 9 N 1.36943 * 109.95192 * 0.22564 * 8 4 3 10 10 C 1.37151 * 110.11420 * 359.97438 * 9 8 4 11 11 N 1.32826 * 132.96441 * 180.02562 * 10 9 8 12 12 C 1.31305 * 121.89134 * 180.02562 * 11 10 9 13 13 C 1.39749 * 121.02689 * 179.73873 * 2 1 3 14 14 C 1.47666 * 120.45514 * 359.97438 * 13 2 1 15 15 O 1.21574 * 119.99878 * 353.99765 * 14 13 2 16 16 N 1.34780 * 119.99900 * 174.00040 * 14 13 2 17 17 C 1.46503 * 119.99764 * 179.97438 * 16 14 13 18 18 H 1.08997 * 112.85095 * 23.79991 * 17 16 14 19 19 C 1.53774 * 113.61299 * 154.99945 * 17 16 14 20 20 C 1.53783 * 87.08145 * 89.11690 * 19 17 16 21 21 H 1.09006 * 113.61050 * 270.79776 * 20 19 17 22 22 C 1.50697 * 113.61644 * 139.98169 * 20 19 17 23 23 C 1.38450 * 119.98872 * 119.71689 * 22 20 19 24 24 F 1.35104 * 120.01533 * 0.02949 * 23 22 20 25 25 C 1.38444 * 119.97602 * 179.76552 * 23 22 20 26 26 C 1.38397 * 119.94542 * 0.49102 * 25 23 22 27 27 F 1.35108 * 120.01077 * 179.78778 * 26 25 23 28 28 C 1.38490 * 119.97917 * 359.76789 * 26 25 23 29 29 C 1.38189 * 120.02305 * 359.97438 * 28 26 25 30 30 C 1.53778 * 87.08143 * 25.43015 * 20 19 17 31 31 H 1.09003 * 109.47134 * 263.96826 * 1 2 3 32 32 H 1.09000 * 109.47233 * 23.96099 * 1 2 3 33 33 H 1.09001 * 109.47650 * 143.96784 * 1 2 3 34 34 H 1.09003 * 109.46620 * 44.71281 * 5 4 3 35 35 H 0.96700 * 113.99406 * 180.02562 * 6 5 4 36 36 H 1.48498 * 110.00346 * 60.00092 * 7 5 4 37 37 H 1.48502 * 110.00021 * 181.31970 * 7 5 4 38 38 H 1.07996 * 125.02667 * 180.23167 * 8 4 3 39 39 H 0.96997 * 124.94520 * 180.02562 * 9 8 4 40 40 H 1.08007 * 119.31033 * 179.97438 * 12 11 10 41 41 H 0.96997 * 120.00311 * 0.02562 * 16 14 13 42 42 H 1.09007 * 113.61372 * 203.65895 * 19 17 16 43 43 H 1.08994 * 113.61864 * 334.47876 * 19 17 16 44 44 H 1.07997 * 120.02777 * 180.25855 * 25 23 22 45 45 H 1.07997 * 119.98923 * 179.97438 * 28 26 25 46 46 H 1.07997 * 119.97582 * 180.02562 * 29 28 26 47 47 H 1.09003 * 113.61385 * 220.01897 * 30 20 19 48 48 H 1.09005 * 113.61126 * 89.12163 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1935 0.0000 4 6 1.8517 2.6100 -0.0120 5 6 0.4528 3.1706 -0.0137 6 8 -0.1197 3.0183 -1.3141 7 14 0.5077 4.9784 0.4328 8 6 2.9950 3.3124 -0.0153 9 7 4.0670 2.4603 -0.0114 10 6 3.6348 1.1586 -0.0049 11 7 4.2720 -0.0068 0.0011 12 6 3.6266 -1.1503 0.0063 13 6 2.2273 -1.1975 0.0055 14 6 1.5223 -2.4950 0.0119 15 8 0.3121 -2.5287 0.1227 16 7 2.2205 -3.6419 -0.1048 17 6 1.5211 -4.9292 -0.0978 18 1 0.4784 -4.8461 -0.4045 19 6 2.2876 -6.0506 -0.8185 20 6 2.9621 -6.3494 0.5309 21 1 3.8772 -5.7809 0.6969 22 6 3.1285 -7.8209 0.8100 23 6 4.3937 -8.3511 0.9969 24 9 5.4791 -7.5494 0.9297 25 6 4.5459 -9.7021 1.2581 26 6 3.4336 -10.5230 1.3219 27 9 3.5809 -11.8424 1.5725 28 6 2.1693 -9.9915 1.1293 29 6 2.0182 -8.6419 0.8740 30 6 1.7217 -5.7322 1.1983 31 1 -0.3633 -0.1080 1.0220 32 1 -0.3634 0.9391 -0.4173 33 1 -0.3634 -0.8310 -0.6045 34 1 -0.1543 2.6344 0.7157 35 1 -1.0218 3.3586 -1.3890 36 1 1.3326 5.7206 -0.5540 37 1 -0.8685 5.5354 0.4657 38 1 3.0602 4.3904 -0.0201 39 1 4.9966 2.7369 -0.0124 40 1 4.1868 -2.0736 0.0107 41 1 3.1861 -3.6151 -0.1928 42 1 1.6476 -6.8579 -1.1748 43 1 2.9763 -5.6883 -1.5816 44 1 5.5322 -10.1158 1.4082 45 1 1.3012 -10.6320 1.1787 46 1 1.0319 -8.2281 0.7243 47 1 1.9546 -5.1125 2.0642 48 1 0.9270 -6.4523 1.3933 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_12890568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:06:32 Heat of formation + Delta-G solvation = -19.512475 kcal Electronic energy + Delta-G solvation = -36293.626905 eV Core-core repulsion = 31145.934115 eV Total energy + Delta-G solvation = -5147.692790 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.139 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -50.05782 -50.03194 -42.85689 -41.56505 -40.41857 -39.01420 -38.44891 -37.83089 -35.22519 -34.59653 -32.12359 -31.93086 -31.66110 -30.67359 -28.89460 -26.68708 -26.62994 -26.09460 -24.77854 -24.26261 -23.91812 -22.81823 -22.02002 -20.39427 -20.26556 -19.35840 -19.24054 -18.72627 -18.48231 -18.19285 -17.59118 -17.36519 -17.03802 -16.94906 -16.78091 -16.50191 -16.41096 -16.35472 -15.82595 -15.76897 -15.49751 -15.39659 -15.20739 -15.09890 -14.77437 -14.71782 -14.18607 -14.11777 -13.90661 -13.75344 -13.71398 -13.58938 -13.49165 -13.40285 -13.27890 -12.98303 -12.77907 -12.66390 -12.54060 -12.00513 -11.98750 -11.69038 -11.27836 -11.17720 -11.10447 -10.51673 -10.26525 -10.13935 -10.06346 -9.63033 -9.57451 -9.13540 -4.85148 -0.34930 -0.11095 -0.08389 -0.01907 1.33352 1.39856 1.61997 1.70554 1.78840 2.00403 2.04047 2.29769 2.74862 2.83736 3.29257 3.33230 3.37022 3.46838 3.51315 3.58741 3.66490 3.68627 3.69662 3.73896 3.79959 3.89678 3.96725 4.10442 4.12853 4.16741 4.20144 4.31368 4.45055 4.59321 4.64271 4.71054 4.72298 4.76560 4.77646 4.85470 4.87975 4.92632 4.93149 4.99798 5.04806 5.10550 5.13212 5.20038 5.25452 5.30400 5.40600 5.62542 5.72768 5.74202 6.20834 6.46476 6.65950 6.82123 7.16422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.063 3.937 3 C -0.167 4.167 4 C -0.160 4.160 5 C -0.060 4.060 6 O -0.558 6.558 7 Si 0.775 3.225 8 C 0.087 3.913 9 N -0.560 5.560 10 C 0.288 3.712 11 N -0.516 5.516 12 C 0.179 3.821 13 C -0.242 4.242 14 C 0.576 3.424 15 O -0.560 6.560 16 N -0.699 5.699 17 C 0.118 3.882 18 H 0.098 0.902 19 C -0.124 4.124 20 C -0.073 4.073 21 H 0.103 0.897 22 C -0.111 4.111 23 C 0.116 3.884 24 F -0.137 7.137 25 C -0.199 4.199 26 C 0.106 3.894 27 F -0.143 7.143 28 C -0.155 4.155 29 C -0.055 4.055 30 C -0.137 4.137 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.392 0.608 36 H -0.278 1.278 37 H -0.290 1.290 38 H 0.216 0.784 39 H 0.438 0.562 40 H 0.192 0.808 41 H 0.411 0.589 42 H 0.113 0.887 43 H 0.084 0.916 44 H 0.150 0.850 45 H 0.162 0.838 46 H 0.173 0.827 47 H 0.069 0.931 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.089 3.217 1.672 3.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.055 3.945 3 C -0.174 4.174 4 C -0.167 4.167 5 C -0.168 4.168 6 O -0.367 6.367 7 Si 0.677 3.323 8 C -0.039 4.039 9 N -0.167 5.167 10 C 0.054 3.946 11 N -0.230 5.230 12 C 0.011 3.989 13 C -0.249 4.249 14 C 0.364 3.636 15 O -0.440 6.440 16 N -0.351 5.351 17 C 0.012 3.988 18 H 0.116 0.884 19 C -0.162 4.162 20 C -0.092 4.092 21 H 0.121 0.879 22 C -0.112 4.112 23 C 0.096 3.904 24 F -0.116 7.116 25 C -0.219 4.219 26 C 0.087 3.913 27 F -0.121 7.121 28 C -0.173 4.173 29 C -0.073 4.073 30 C -0.175 4.175 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.242 0.758 36 H -0.204 1.204 37 H -0.216 1.216 38 H 0.233 0.767 39 H 0.280 0.720 40 H 0.209 0.791 41 H 0.249 0.751 42 H 0.131 0.869 43 H 0.103 0.897 44 H 0.167 0.833 45 H 0.180 0.820 46 H 0.190 0.810 47 H 0.087 0.913 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.552 3.872 1.381 4.148 hybrid contribution -0.266 -0.662 -0.754 1.038 sum 0.286 3.210 0.627 3.283 Atomic orbital electron populations 1.21094 0.89108 1.04001 1.03402 1.20084 0.97335 0.89956 0.87133 1.19753 0.93315 0.94364 1.09936 1.19720 0.94480 0.90067 1.12420 1.24468 0.91529 1.13306 0.87491 1.86596 1.34940 1.84253 1.30957 0.94122 0.80426 0.70544 0.87169 1.22235 0.84189 0.97102 1.00423 1.41569 1.10511 1.01791 1.62801 1.18766 0.89552 0.86800 0.99462 1.66506 1.40893 0.96447 1.19121 1.22958 0.89845 0.95200 0.90935 1.20507 0.95348 0.93493 1.15543 1.17899 0.86429 0.83770 0.75485 1.90734 1.14849 1.87461 1.50991 1.45482 1.11087 1.04567 1.73957 1.21874 0.97661 0.81772 0.97459 0.88423 1.23434 0.99329 0.97772 0.95678 1.21564 0.99558 0.89987 0.98050 0.87873 1.19983 0.91115 0.97451 1.02611 1.17322 0.83414 0.87593 1.02058 1.91504 1.53418 1.72907 1.93763 1.21164 1.00592 0.92926 1.07183 1.17574 0.94518 0.77697 1.01515 1.91525 1.96670 1.32300 1.91653 1.21518 0.96199 0.97165 1.02465 1.21080 0.99630 0.91343 0.95229 1.23590 0.97470 0.99180 0.97303 0.90061 0.90084 0.89950 0.90074 0.75788 1.20446 1.21637 0.76737 0.72026 0.79105 0.75122 0.86855 0.89749 0.83256 0.82038 0.81006 0.91250 0.87076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 8.46 71.23 0.60 -0.23 16 2 C 0.06 0.50 5.98 -19.25 -0.12 0.38 16 3 C -0.17 -1.15 6.16 -20.19 -0.12 -1.28 16 4 C -0.16 -0.38 5.61 -18.64 -0.10 -0.49 16 5 C -0.06 0.04 1.87 71.24 0.13 0.17 16 6 O -0.56 -1.22 11.64 -148.98 -1.73 -2.95 16 7 Si 0.77 -3.85 30.80 68.60 2.11 -1.73 16 8 C 0.09 -0.22 10.44 82.97 0.87 0.65 16 9 N -0.56 0.54 6.04 -192.25 -1.16 -0.62 16 10 C 0.29 1.65 8.42 134.02 1.13 2.78 16 11 N -0.52 -3.04 10.37 -191.74 -1.99 -5.03 16 12 C 0.18 0.44 10.67 85.20 0.91 1.35 16 13 C -0.24 -1.31 5.89 -19.99 -0.12 -1.43 16 14 C 0.58 2.89 7.72 86.73 0.67 3.56 16 15 O -0.56 -6.20 13.09 -3.95 -0.05 -6.25 16 16 N -0.70 1.37 5.21 -443.08 -2.31 -0.94 16 17 C 0.12 -0.41 4.32 45.51 0.20 -0.21 16 18 H 0.10 -0.03 7.46 -2.39 -0.02 -0.05 16 19 C -0.12 0.85 7.29 31.12 0.23 1.08 16 20 C -0.07 0.38 3.78 -11.01 -0.04 0.34 16 21 H 0.10 -0.50 7.45 -2.38 -0.02 -0.52 16 22 C -0.11 0.31 5.29 -19.82 -0.10 0.20 16 23 C 0.12 0.13 7.24 22.37 0.16 0.30 16 24 F -0.14 -0.44 16.36 44.97 0.74 0.30 16 25 C -0.20 -0.33 10.01 22.36 0.22 -0.11 16 26 C 0.11 0.16 7.30 22.37 0.16 0.33 16 27 F -0.14 -0.67 17.27 44.97 0.78 0.11 16 28 C -0.15 0.48 10.03 22.32 0.22 0.70 16 29 C -0.06 0.30 8.61 22.26 0.19 0.49 16 30 C -0.14 0.69 7.25 31.12 0.23 0.92 16 31 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.08 0.45 4.79 -2.39 -0.01 0.44 16 33 H 0.08 0.83 5.96 -2.39 -0.01 0.82 16 34 H 0.08 -0.18 7.13 -2.39 -0.02 -0.20 16 35 H 0.39 -2.20 8.74 -74.06 -0.65 -2.85 16 36 H -0.28 0.20 7.04 99.48 0.70 0.90 16 37 H -0.29 -0.08 7.11 99.48 0.71 0.63 16 38 H 0.22 -2.12 6.31 -2.91 -0.02 -2.14 16 39 H 0.44 -2.94 8.96 -92.71 -0.83 -3.77 16 40 H 0.19 -1.06 6.43 -2.91 -0.02 -1.08 16 41 H 0.41 -2.81 6.78 -92.71 -0.63 -3.43 16 42 H 0.11 -1.01 7.72 -2.38 -0.02 -1.02 16 43 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 44 H 0.15 0.05 8.06 -2.91 -0.02 0.03 16 45 H 0.16 -1.12 8.06 -2.91 -0.02 -1.15 16 46 H 0.17 -1.90 6.65 -2.91 -0.02 -1.92 16 47 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 48 H 0.11 -0.86 6.31 -2.38 -0.02 -0.88 16 Total: 0.00 -24.86 398.50 0.72 -24.14 By element: Atomic # 1 Polarization: -15.54 SS G_CDS: -0.97 Total: -16.51 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 5.31 Total: 9.50 kcal Atomic # 7 Polarization: -1.13 SS G_CDS: -5.46 Total: -6.59 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -1.79 Total: -9.21 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 1.51 Total: 0.41 kcal Atomic # 14 Polarization: -3.85 SS G_CDS: 2.11 Total: -1.73 kcal Total: -24.86 0.72 -24.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_12890568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.630 kcal (2) G-P(sol) polarization free energy of solvation -24.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds