Wall clock time and date at job start Sun Mar 7 2021 00:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86307 * 109.46899 * 2 1 4 4 C 1.50699 * 109.47224 * 120.00121 * 2 1 3 5 5 C 1.38329 * 119.86925 * 64.99986 * 4 2 1 6 6 C 1.38005 * 120.12460 * 180.02562 * 5 4 2 7 7 C 1.39400 * 119.87351 * 359.97438 * 6 5 4 8 8 C 1.48268 * 120.12841 * 179.97438 * 7 6 5 9 9 C 1.39505 * 119.97829 * 359.72570 * 8 7 6 10 10 C 1.37662 * 120.02752 * 179.76740 * 9 8 7 11 11 C 1.39714 * 119.97302 * 0.50480 * 10 9 8 12 12 C 1.47718 * 120.02202 * 179.72425 * 11 10 9 13 13 O 1.21572 * 120.00022 * 180.02562 * 12 11 10 14 14 N 1.34775 * 120.00371 * 0.02562 * 12 11 10 15 15 C 1.46498 * 120.00418 * 179.97438 * 14 12 11 16 16 H 1.09002 * 112.84947 * 336.20410 * 15 14 12 17 17 C 1.53787 * 113.61229 * 107.50532 * 15 14 12 18 18 C 1.53777 * 87.07997 * 89.11899 * 17 15 14 19 19 H 1.08999 * 113.61756 * 270.88106 * 18 17 15 20 20 C 1.50703 * 113.68835 * 139.98961 * 18 17 15 21 21 C 1.38450 * 119.98499 * 142.19039 * 20 18 17 22 22 F 1.35101 * 120.01236 * 0.02562 * 21 20 18 23 23 C 1.38437 * 119.97609 * 179.76862 * 21 20 18 24 24 C 1.38396 * 119.94888 * 0.48386 * 23 21 20 25 25 F 1.35103 * 120.01417 * 179.79012 * 24 23 21 26 26 C 1.38492 * 119.97408 * 359.76938 * 24 23 21 27 27 C 1.38190 * 120.02749 * 359.97438 * 26 24 23 28 28 C 1.53777 * 113.61838 * 205.00576 * 15 14 12 29 29 C 1.39699 * 119.95218 * 359.75052 * 11 10 9 30 30 C 1.37666 * 119.97680 * 359.97438 * 29 11 10 31 31 C 1.39408 * 119.74186 * 359.95983 * 7 6 5 32 32 C 1.37994 * 119.87425 * 0.08388 * 31 7 6 33 33 H 0.96708 * 113.99915 * 299.99757 * 1 2 3 34 34 H 1.09007 * 109.46834 * 240.00610 * 2 1 3 35 35 H 1.48497 * 109.99924 * 300.00022 * 3 2 1 36 36 H 1.48498 * 109.99642 * 61.32142 * 3 2 1 37 37 H 1.08000 * 119.94123 * 359.97438 * 5 4 2 38 38 H 1.08005 * 120.06254 * 179.70084 * 6 5 4 39 39 H 1.08001 * 119.98554 * 0.02562 * 9 8 7 40 40 H 1.08000 * 120.01260 * 180.23492 * 10 9 8 41 41 H 0.97006 * 119.99743 * 0.02562 * 14 12 11 42 42 H 1.09003 * 113.61544 * 203.66719 * 17 15 14 43 43 H 1.08997 * 113.61285 * 334.57127 * 17 15 14 44 44 H 1.08007 * 120.02837 * 180.25253 * 23 21 20 45 45 H 1.07997 * 119.99219 * 179.97438 * 26 24 23 46 46 H 1.07995 * 119.97811 * 179.97438 * 27 26 24 47 47 H 1.08995 * 113.61675 * 25.42893 * 28 15 14 48 48 H 1.08997 * 113.61601 * 156.33833 * 28 15 14 49 49 H 1.08002 * 120.01528 * 179.97438 * 29 11 10 50 50 H 1.07999 * 119.98883 * 179.97438 * 30 29 11 51 51 H 1.08000 * 120.05649 * 180.02562 * 31 7 6 52 52 H 1.07997 * 119.94005 * 179.97438 * 32 31 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6831 -2.0612 1.3957 6 6 2.1402 -2.7169 2.5207 7 6 2.8538 -2.0155 3.4912 8 6 3.3471 -2.7143 4.7023 9 6 3.0921 -4.0750 4.8745 10 6 3.5537 -4.7258 5.9963 11 6 4.2688 -4.0207 6.9677 12 6 4.7594 -4.7167 8.1748 13 8 5.3812 -4.1026 9.0200 14 7 4.5177 -6.0323 8.3392 15 6 5.0048 -6.7227 9.5360 16 1 5.8585 -6.2237 9.9945 17 6 3.8920 -7.0852 10.5337 18 6 3.7430 -8.4091 9.7658 19 1 3.0358 -8.3566 8.9381 20 6 3.5141 -9.6032 10.6563 21 6 2.6459 -10.6059 10.2595 22 9 2.0043 -10.5144 9.0741 23 6 2.4394 -11.7050 11.0755 24 6 3.0937 -11.7952 12.2917 25 9 2.8899 -12.8652 13.0910 26 6 3.9578 -10.7884 12.6889 27 6 4.1672 -9.6943 11.8712 28 6 5.2090 -8.2336 9.3355 29 6 4.5190 -2.6570 6.7968 30 6 4.0613 -2.0094 5.6715 31 6 3.1022 -0.6547 3.3185 32 6 2.6394 -0.0093 2.1900 33 1 -0.3933 0.4417 0.7651 34 1 1.7923 -0.5138 -0.8901 35 1 1.5614 2.4679 -1.2085 36 1 1.5878 2.4585 1.2243 37 1 1.1297 -2.6035 0.6433 38 1 1.9416 -3.7705 2.6510 39 1 2.5359 -4.6189 4.1254 40 1 3.3595 -5.7800 6.1276 41 1 4.0219 -6.5224 7.6646 42 1 4.2468 -7.2113 11.5566 43 1 3.0165 -6.4396 10.4648 44 1 1.7654 -12.4898 10.7650 45 1 4.4681 -10.8583 13.6381 46 1 4.8408 -8.9094 12.1819 47 1 5.3966 -8.5151 8.2994 48 1 5.9238 -8.6736 10.0308 49 1 5.0713 -2.1108 7.5473 50 1 4.2543 -0.9550 5.5394 51 1 3.6549 -0.1064 4.0671 52 1 2.8308 1.0450 2.0553 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_13158362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:06:37 Heat of formation + Delta-G solvation = -39.089284 kcal Electronic energy + Delta-G solvation = -37371.850272 eV Core-core repulsion = 32097.708108 eV Total energy + Delta-G solvation = -5274.142163 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.148 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -50.07683 -50.04709 -41.76412 -41.04768 -40.40512 -39.35221 -38.58726 -37.63178 -34.86528 -33.90101 -32.58551 -31.92422 -31.65144 -31.47768 -30.62108 -27.19587 -26.73047 -26.14111 -24.66429 -24.64393 -24.12310 -22.97036 -22.57004 -22.36263 -21.36222 -20.31059 -19.43432 -19.16850 -18.54014 -18.20679 -17.86774 -17.36945 -17.05350 -17.01920 -16.84625 -16.66523 -16.37913 -16.32803 -16.12348 -16.06914 -16.01433 -15.52174 -15.45090 -15.25005 -15.21045 -15.03093 -14.90846 -14.75272 -14.30363 -14.23659 -14.04339 -13.98614 -13.75064 -13.58051 -13.52339 -13.45516 -13.18560 -12.83858 -12.78277 -12.60146 -12.55431 -12.07959 -12.04777 -11.94179 -11.74026 -11.52652 -11.31855 -11.12199 -10.77118 -10.59125 -10.17479 -10.08520 -10.06099 -9.95084 -9.60114 -9.07798 -4.93262 -0.69124 -0.13047 -0.03640 0.35197 0.40883 0.50129 1.29973 1.58051 1.77427 1.94657 2.01877 2.27773 2.60127 2.81923 3.00685 3.29229 3.37908 3.44175 3.45399 3.48622 3.61438 3.63785 3.66973 3.68316 3.79344 3.86742 3.88008 3.93527 4.01423 4.05106 4.07434 4.16819 4.27179 4.28707 4.37488 4.54747 4.59431 4.64896 4.66762 4.71295 4.73913 4.82394 4.83943 4.90054 4.90241 4.91037 4.92473 5.00278 5.07589 5.08893 5.10239 5.14509 5.20926 5.24602 5.28394 5.41912 5.50097 5.56353 5.65738 5.72298 5.80035 5.93562 6.42900 6.46198 7.11013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.082 4.082 3 Si 0.763 3.237 4 C -0.115 4.115 5 C -0.101 4.101 6 C -0.108 4.108 7 C -0.059 4.059 8 C -0.022 4.022 9 C -0.121 4.121 10 C -0.075 4.075 11 C -0.152 4.152 12 C 0.560 3.440 13 O -0.577 6.577 14 N -0.697 5.697 15 C 0.113 3.887 16 H 0.095 0.905 17 C -0.138 4.138 18 C -0.072 4.072 19 H 0.103 0.897 20 C -0.111 4.111 21 C 0.116 3.884 22 F -0.137 7.137 23 C -0.198 4.198 24 C 0.107 3.893 25 F -0.143 7.143 26 C -0.155 4.155 27 C -0.056 4.056 28 C -0.122 4.122 29 C -0.069 4.069 30 C -0.122 4.122 31 C -0.107 4.107 32 C -0.122 4.122 33 H 0.386 0.614 34 H 0.126 0.874 35 H -0.305 1.305 36 H -0.282 1.282 37 H 0.132 0.868 38 H 0.146 0.854 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.413 0.587 42 H 0.111 0.889 43 H 0.067 0.933 44 H 0.150 0.850 45 H 0.162 0.838 46 H 0.172 0.828 47 H 0.086 0.914 48 H 0.114 0.886 49 H 0.130 0.870 50 H 0.149 0.851 51 H 0.146 0.854 52 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.286 -0.873 -1.321 2.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.192 4.192 3 Si 0.669 3.331 4 C -0.116 4.116 5 C -0.119 4.119 6 C -0.126 4.126 7 C -0.059 4.059 8 C -0.023 4.023 9 C -0.139 4.139 10 C -0.094 4.094 11 C -0.155 4.155 12 C 0.349 3.651 13 O -0.457 6.457 14 N -0.349 5.349 15 C 0.008 3.992 16 H 0.113 0.887 17 C -0.177 4.177 18 C -0.090 4.090 19 H 0.122 0.878 20 C -0.112 4.112 21 C 0.097 3.903 22 F -0.115 7.115 23 C -0.218 4.218 24 C 0.088 3.912 25 F -0.121 7.121 26 C -0.173 4.173 27 C -0.073 4.073 28 C -0.160 4.160 29 C -0.088 4.088 30 C -0.140 4.140 31 C -0.124 4.124 32 C -0.139 4.139 33 H 0.235 0.765 34 H 0.143 0.857 35 H -0.234 1.234 36 H -0.209 1.209 37 H 0.150 0.850 38 H 0.163 0.837 39 H 0.172 0.828 40 H 0.173 0.827 41 H 0.251 0.749 42 H 0.129 0.871 43 H 0.086 0.914 44 H 0.168 0.832 45 H 0.180 0.820 46 H 0.189 0.811 47 H 0.105 0.895 48 H 0.132 0.868 49 H 0.148 0.852 50 H 0.166 0.834 51 H 0.164 0.836 52 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.573 0.003 -1.278 2.873 hybrid contribution -1.815 -0.711 0.183 1.958 sum 0.758 -0.709 -1.095 1.508 Atomic orbital electron populations 1.86581 1.18516 1.80352 1.50182 1.25218 0.83413 1.11671 0.98851 0.94070 0.90425 0.72326 0.76276 1.20441 0.99314 0.95063 0.96750 1.21114 0.98922 0.93954 0.97930 1.21523 0.96925 1.00995 0.93129 1.18938 0.99187 0.93867 0.93951 1.19150 0.96042 0.93895 0.93194 1.21459 1.00366 0.93592 0.98450 1.21454 0.94794 1.00748 0.92368 1.19988 1.04336 0.95247 0.95956 1.18508 0.78519 0.82268 0.85777 1.90774 1.42471 1.66959 1.45539 1.45516 1.57138 1.08631 1.23599 1.21906 0.97726 0.93347 0.86215 0.88713 1.23596 0.99215 0.95194 0.99684 1.21547 0.98811 0.91043 0.97616 0.87850 1.19964 0.97754 0.96089 0.97416 1.17303 0.95057 0.95556 0.82396 1.91501 1.80000 1.96142 1.43905 1.21166 1.05007 1.00598 0.95031 1.17573 0.98784 0.85696 0.89192 1.91526 1.93873 1.54108 1.72608 1.21518 0.99357 0.93516 1.02954 1.21073 0.97633 0.97418 0.91199 1.23425 0.95413 0.93158 1.04011 1.21269 0.96868 0.93352 0.97317 1.21397 0.98224 1.01278 0.93078 1.21473 0.99304 0.93673 0.97996 1.21171 0.98368 1.00418 0.93937 0.76506 0.85657 1.23351 1.20860 0.84967 0.83687 0.82820 0.82730 0.74857 0.87110 0.91415 0.83180 0.82048 0.81098 0.89532 0.86813 0.85233 0.83361 0.83637 0.84010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.93 12.83 -148.98 -1.91 -2.85 16 2 C -0.08 0.14 2.80 71.24 0.20 0.34 16 3 Si 0.76 -2.00 29.87 68.60 2.05 0.05 16 4 C -0.12 0.17 5.36 -19.82 -0.11 0.06 16 5 C -0.10 0.12 9.67 22.24 0.21 0.34 16 6 C -0.11 0.23 9.43 22.49 0.21 0.45 16 7 C -0.06 0.07 5.88 -20.05 -0.12 -0.05 16 8 C -0.02 0.02 5.88 -20.00 -0.12 -0.09 16 9 C -0.12 0.43 9.41 22.44 0.21 0.64 16 10 C -0.08 0.28 9.52 22.49 0.21 0.49 16 11 C -0.15 -0.25 5.88 -20.06 -0.12 -0.37 16 12 C 0.56 2.42 7.77 86.75 0.67 3.09 16 13 O -0.58 -7.24 15.93 -3.94 -0.06 -7.31 16 14 N -0.70 1.77 5.21 -443.02 -2.31 -0.54 16 15 C 0.11 -0.39 4.32 45.52 0.20 -0.19 16 16 H 0.09 0.02 7.46 -2.39 -0.02 0.00 16 17 C -0.14 0.69 7.26 31.12 0.23 0.91 16 18 C -0.07 0.41 3.78 -11.01 -0.04 0.37 16 19 H 0.10 -0.57 7.44 -2.39 -0.02 -0.59 16 20 C -0.11 0.36 5.30 -19.81 -0.10 0.26 16 21 C 0.12 0.06 7.24 22.37 0.16 0.22 16 22 F -0.14 -0.31 16.36 44.97 0.74 0.42 16 23 C -0.20 -0.21 10.01 22.35 0.22 0.01 16 24 C 0.11 0.11 7.30 22.37 0.16 0.28 16 25 F -0.14 -0.60 17.27 44.97 0.78 0.17 16 26 C -0.15 0.53 10.02 22.32 0.22 0.76 16 27 C -0.06 0.32 8.61 22.26 0.19 0.51 16 28 C -0.12 0.90 7.29 31.12 0.23 1.13 16 29 C -0.07 -0.18 9.58 22.49 0.22 0.04 16 30 C -0.12 0.05 9.41 22.44 0.21 0.27 16 31 C -0.11 0.24 9.43 22.49 0.21 0.45 16 32 C -0.12 0.31 8.65 22.23 0.19 0.50 16 33 H 0.39 -1.41 8.70 -74.05 -0.64 -2.05 16 34 H 0.13 -0.41 7.96 -2.38 -0.02 -0.43 16 35 H -0.31 -1.69 7.11 99.48 0.71 -0.98 16 36 H -0.28 -0.27 7.00 99.48 0.70 0.43 16 37 H 0.13 -0.31 8.06 -2.91 -0.02 -0.33 16 38 H 0.15 -0.92 6.19 -2.91 -0.02 -0.94 16 39 H 0.15 -1.26 6.19 -2.91 -0.02 -1.28 16 40 H 0.16 -1.57 6.39 -2.91 -0.02 -1.59 16 41 H 0.41 -3.29 6.72 -92.70 -0.62 -3.91 16 42 H 0.11 -0.83 6.32 -2.39 -0.02 -0.85 16 43 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 44 H 0.15 -0.05 8.06 -2.91 -0.02 -0.07 16 45 H 0.16 -1.17 8.06 -2.91 -0.02 -1.19 16 46 H 0.17 -1.91 6.66 -2.91 -0.02 -1.93 16 47 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 48 H 0.11 -1.06 7.72 -2.39 -0.02 -1.08 16 49 H 0.13 0.50 7.64 -2.91 -0.02 0.48 16 50 H 0.15 -0.65 6.19 -2.91 -0.02 -0.67 16 51 H 0.15 -0.87 6.19 -2.91 -0.02 -0.88 16 52 H 0.14 -0.82 4.82 -2.91 -0.01 -0.83 16 Total: 0.00 -21.84 434.41 2.64 -19.21 By element: Atomic # 1 Polarization: -19.37 SS G_CDS: -0.21 Total: -19.58 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 3.56 Total: 10.41 kcal Atomic # 7 Polarization: 1.77 SS G_CDS: -2.31 Total: -0.54 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -1.97 Total: -10.15 kcal Atomic # 9 Polarization: -0.92 SS G_CDS: 1.51 Total: 0.60 kcal Atomic # 14 Polarization: -2.00 SS G_CDS: 2.05 Total: 0.05 kcal Total: -21.84 2.64 -19.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_13158362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.883 kcal (2) G-P(sol) polarization free energy of solvation -21.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds