Wall clock time and date at job start Sun Mar 7 2021 00:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86304 * 109.46929 * 2 1 4 4 C 1.50700 * 109.47096 * 120.00208 * 2 1 3 5 5 C 1.34702 * 125.66512 * 64.99672 * 4 2 1 6 6 C 1.40965 * 107.02799 * 179.76411 * 5 4 2 7 7 C 1.35935 * 106.74408 * 0.35146 * 6 5 4 8 8 C 1.47820 * 125.93444 * 179.91028 * 7 6 5 9 9 C 1.39806 * 119.99788 * 359.69613 * 8 7 6 10 10 C 1.37811 * 120.24223 * 180.02562 * 9 8 7 11 11 C 1.38772 * 120.24742 * 359.71948 * 10 9 8 12 12 O 1.35653 * 120.00521 * 180.27603 * 11 10 9 13 13 C 1.40254 * 119.99429 * 0.55574 * 11 10 9 14 14 C 1.47559 * 120.12028 * 179.71506 * 13 11 10 15 15 O 1.21588 * 120.00228 * 359.45723 * 14 13 11 16 16 N 1.34784 * 119.99859 * 179.72674 * 14 13 11 17 17 C 1.46499 * 119.99893 * 179.73027 * 16 14 13 18 18 H 1.08994 * 112.85555 * 23.80061 * 17 16 14 19 19 C 1.53777 * 113.61200 * 155.00334 * 17 16 14 20 20 C 1.53781 * 87.08638 * 89.11383 * 19 17 16 21 21 H 1.08999 * 113.60975 * 270.80334 * 20 19 17 22 22 C 1.50699 * 113.61757 * 139.97879 * 20 19 17 23 23 C 1.38455 * 119.98340 * 119.72301 * 22 20 19 24 24 F 1.35100 * 120.01450 * 0.02562 * 23 22 20 25 25 C 1.38443 * 119.96890 * 179.76951 * 23 22 20 26 26 C 1.38393 * 119.94934 * 0.52620 * 25 23 22 27 27 F 1.35103 * 120.01383 * 179.74317 * 26 25 23 28 28 C 1.38490 * 119.97858 * 359.73011 * 26 25 23 29 29 C 1.38187 * 120.02166 * 359.97438 * 28 26 25 30 30 C 1.53776 * 87.07882 * 25.42927 * 20 19 17 31 31 C 1.39213 * 120.00191 * 179.71609 * 8 7 6 32 32 O 1.34346 * 125.66283 * 244.97568 * 4 2 1 33 33 H 0.96707 * 114.00135 * 60.00136 * 1 2 3 34 34 H 1.08995 * 109.47030 * 239.99979 * 2 1 3 35 35 H 1.48499 * 109.99871 * 60.00009 * 3 2 1 36 36 H 1.48497 * 109.99582 * 181.31735 * 3 2 1 37 37 H 1.08003 * 126.48794 * 0.02562 * 5 4 2 38 38 H 1.08003 * 126.63035 * 180.26788 * 6 5 4 39 39 H 1.07999 * 119.87832 * 0.02562 * 9 8 7 40 40 H 1.08002 * 119.87618 * 180.02562 * 10 9 8 41 41 H 0.96697 * 114.00015 * 270.27668 * 12 11 10 42 42 H 0.97005 * 119.99846 * 359.72815 * 16 14 13 43 43 H 1.09002 * 113.61299 * 203.66622 * 19 17 16 44 44 H 1.08999 * 113.61560 * 334.47421 * 19 17 16 45 45 H 1.07999 * 120.02563 * 180.25777 * 25 23 22 46 46 H 1.08004 * 119.99254 * 180.02562 * 28 26 25 47 47 H 1.08005 * 119.97137 * 179.97438 * 29 28 26 48 48 H 1.08998 * 113.61700 * 220.02123 * 30 20 19 49 49 H 1.09006 * 113.61624 * 89.11539 * 30 20 19 50 50 H 1.07997 * 120.12224 * 0.02562 * 31 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.7570 -2.0167 1.5093 6 6 2.3865 -2.2623 2.7464 7 6 2.9088 -1.0781 3.1620 8 6 3.6602 -0.8535 4.4149 9 6 3.8817 -1.9152 5.2971 10 6 4.5812 -1.7113 6.4669 11 6 5.0760 -0.4519 6.7751 12 8 5.7687 -0.2580 7.9252 13 6 4.8547 0.6217 5.9002 14 6 5.3741 1.9634 6.2281 15 8 5.9867 2.1419 7.2632 16 7 5.1648 2.9922 5.3829 17 6 5.6754 4.3255 5.7114 18 1 6.5198 4.2976 6.4000 19 6 5.9142 5.2143 4.4794 20 6 4.4555 5.6778 4.6287 21 1 3.7423 5.0563 4.0872 22 6 4.2607 7.1502 4.3734 23 6 3.4234 7.5709 3.3541 24 9 2.7808 6.6617 2.5888 25 6 3.2410 8.9236 3.1229 26 6 3.9043 9.8537 3.9040 27 9 3.7313 11.1741 3.6762 28 6 4.7454 9.4305 4.9196 29 6 4.9220 8.0801 5.1535 30 6 4.5776 5.3220 6.1198 31 6 4.1471 0.4154 4.7167 32 8 2.6277 -0.1462 2.2312 33 1 -0.3934 0.4417 -0.7651 34 1 1.7923 -0.5138 -0.8899 35 1 1.5614 2.4679 1.2085 36 1 3.5345 1.7703 -0.0321 37 1 1.2373 -2.7401 0.8984 38 1 2.4419 -3.2082 3.2647 39 1 3.5032 -2.8987 5.0610 40 1 4.7493 -2.5358 7.1439 41 1 5.2165 -0.0132 8.6803 42 1 4.6761 2.8498 4.5572 43 1 6.6435 6.0067 4.6475 44 1 6.1036 4.6518 3.5652 45 1 2.5849 9.2528 2.3307 46 1 5.2629 10.1562 5.5296 47 1 5.5785 7.7509 5.9454 48 1 3.6867 4.8464 6.5296 49 1 4.9416 6.1439 6.7364 50 1 3.9765 1.2371 4.0370 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13428180_13259648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:06:56 Heat of formation + Delta-G solvation = -88.735011 kcal Electronic energy + Delta-G solvation = -40526.986104 eV Core-core repulsion = 34897.090515 eV Total energy + Delta-G solvation = -5629.895588 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 428.131 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -50.07005 -50.01215 -43.75310 -41.87500 -41.03113 -39.71658 -38.58918 -38.08521 -37.80467 -34.76754 -34.22009 -32.89082 -32.57843 -31.93247 -31.30576 -30.16586 -26.92564 -26.57321 -26.40025 -25.30351 -24.34347 -23.62837 -23.13844 -22.76820 -21.87285 -21.23552 -20.42990 -19.65206 -19.34434 -19.02855 -18.76506 -18.28275 -17.95082 -17.34362 -17.18195 -17.08323 -17.04584 -16.80238 -16.65848 -16.42715 -16.34101 -16.21651 -15.89316 -15.86514 -15.59567 -15.47900 -15.29863 -15.17702 -14.63933 -14.51926 -14.39722 -14.13303 -14.11404 -13.93201 -13.88141 -13.70314 -13.60069 -13.53817 -13.25513 -13.14563 -12.90419 -12.72238 -12.66030 -12.20203 -12.12709 -11.89955 -11.85870 -11.45269 -11.10041 -10.84784 -10.65474 -10.44529 -10.37461 -10.20493 -10.10881 -9.66422 -8.95336 -5.16798 -0.61711 -0.28755 -0.19497 -0.11984 0.70887 1.06706 1.37495 1.54061 1.60028 1.87763 1.93100 1.93471 2.18886 2.56848 2.76684 3.02787 3.12348 3.16804 3.33589 3.35079 3.38382 3.46882 3.51381 3.53941 3.58086 3.71121 3.74025 3.78608 3.90551 3.92808 3.93543 4.04528 4.07235 4.19099 4.31230 4.45268 4.51356 4.52026 4.55549 4.62006 4.66818 4.70353 4.72853 4.75545 4.78524 4.81760 4.84583 4.93168 4.95066 4.95820 5.05293 5.10301 5.14375 5.35825 5.39787 5.45920 5.63968 5.95411 6.34758 6.40279 6.62091 7.12885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.034 4.034 3 Si 0.702 3.298 4 C -0.008 4.008 5 C -0.164 4.164 6 C -0.185 4.185 7 C 0.033 3.967 8 C -0.033 4.033 9 C -0.051 4.051 10 C -0.148 4.148 11 C 0.181 3.819 12 O -0.475 6.475 13 C -0.164 4.164 14 C 0.565 3.435 15 O -0.513 6.513 16 N -0.713 5.713 17 C 0.122 3.878 18 H 0.111 0.889 19 C -0.135 4.135 20 C -0.077 4.077 21 H 0.102 0.898 22 C -0.115 4.115 23 C 0.133 3.867 24 F -0.129 7.129 25 C -0.189 4.189 26 C 0.128 3.872 27 F -0.130 7.130 28 C -0.159 4.159 29 C -0.060 4.060 30 C -0.142 4.142 31 C -0.055 4.055 32 O -0.173 6.173 33 H 0.390 0.610 34 H 0.095 0.905 35 H -0.247 1.247 36 H -0.251 1.251 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.141 0.859 40 H 0.147 0.853 41 H 0.400 0.600 42 H 0.399 0.601 43 H 0.103 0.897 44 H 0.079 0.921 45 H 0.150 0.850 46 H 0.145 0.855 47 H 0.146 0.854 48 H 0.077 0.923 49 H 0.099 0.901 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.006 -0.766 -3.698 4.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.144 4.144 3 Si 0.601 3.399 4 C -0.057 4.057 5 C -0.183 4.183 6 C -0.204 4.204 7 C -0.017 4.017 8 C -0.033 4.033 9 C -0.070 4.070 10 C -0.166 4.166 11 C 0.134 3.866 12 O -0.286 6.286 13 C -0.168 4.168 14 C 0.352 3.648 15 O -0.388 6.388 16 N -0.366 5.366 17 C 0.017 3.983 18 H 0.129 0.871 19 C -0.173 4.173 20 C -0.095 4.095 21 H 0.120 0.880 22 C -0.116 4.116 23 C 0.113 3.887 24 F -0.107 7.107 25 C -0.209 4.209 26 C 0.108 3.892 27 F -0.108 7.108 28 C -0.177 4.177 29 C -0.078 4.078 30 C -0.180 4.180 31 C -0.074 4.074 32 O -0.071 6.071 33 H 0.240 0.760 34 H 0.113 0.887 35 H -0.171 1.171 36 H -0.176 1.176 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.159 0.841 40 H 0.165 0.835 41 H 0.259 0.741 42 H 0.235 0.765 43 H 0.121 0.879 44 H 0.097 0.903 45 H 0.167 0.833 46 H 0.163 0.837 47 H 0.163 0.837 48 H 0.096 0.904 49 H 0.117 0.883 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.438 -0.160 -2.310 2.356 hybrid contribution -1.023 -0.560 -0.413 1.237 sum -1.460 -0.720 -2.722 3.172 Atomic orbital electron populations 1.86469 1.16344 1.81985 1.50233 1.23773 0.86170 1.11581 0.92875 0.95217 0.81076 0.76320 0.87263 1.21369 1.00631 0.92652 0.91062 1.21542 1.03245 0.95618 0.97930 1.21863 1.02636 0.98367 0.97578 1.20298 1.03363 0.87519 0.90502 1.17582 1.00107 0.94194 0.91437 1.21134 0.95504 0.98374 0.91947 1.21409 0.99178 0.97381 0.98624 1.18580 0.89210 0.90803 0.87996 1.84751 1.35112 1.90984 1.17796 1.20253 1.04531 0.94225 0.97786 1.17957 0.79519 0.83632 0.83688 1.90836 1.39567 1.84088 1.24340 1.45622 1.58327 1.08322 1.24294 1.21833 0.97628 0.80893 0.97987 0.87089 1.23459 0.95868 0.99404 0.98605 1.21562 0.98397 0.91165 0.98384 0.88028 1.19789 0.98785 0.96626 0.96377 1.17150 0.94364 0.85732 0.91425 1.91530 1.79565 1.65951 1.73689 1.21076 1.04693 0.91400 1.03708 1.17334 0.97757 0.77773 0.96320 1.91562 1.94004 1.31375 1.93876 1.21258 1.00490 0.97249 0.98751 1.20772 0.97659 0.91085 0.98251 1.23586 1.00109 0.99363 0.94957 1.21269 0.94502 0.96603 0.95016 1.83937 1.58351 1.38189 1.26605 0.76045 0.88706 1.17133 1.17575 0.82564 0.82520 0.84085 0.83490 0.74105 0.76537 0.87890 0.90269 0.83252 0.83712 0.83661 0.90380 0.88259 0.85084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.36 12.86 -35.23 -0.45 -0.10 16 2 C -0.03 0.02 2.97 36.01 0.11 0.13 16 3 Si 0.70 -0.85 32.11 -169.99 -5.46 -6.31 16 4 C -0.01 -0.02 6.24 -35.56 -0.22 -0.24 16 5 C -0.16 -0.30 10.78 -39.80 -0.43 -0.73 16 6 C -0.19 -0.24 10.26 -39.38 -0.40 -0.65 16 7 C 0.03 0.08 7.03 -36.49 -0.26 -0.18 16 8 C -0.03 -0.04 5.87 -105.03 -0.62 -0.66 16 9 C -0.05 0.02 9.54 -39.15 -0.37 -0.35 16 10 C -0.15 0.04 9.96 -39.54 -0.39 -0.35 16 11 C 0.18 0.30 6.72 -38.63 -0.26 0.04 16 12 O -0.47 -1.03 11.55 -40.61 -0.47 -1.50 16 13 C -0.16 -0.32 5.88 -104.90 -0.62 -0.94 16 14 C 0.56 1.64 7.76 -12.46 -0.10 1.55 16 15 O -0.51 -3.02 14.74 -16.66 -0.25 -3.26 16 16 N -0.71 -0.25 5.21 -54.05 -0.28 -0.53 16 17 C 0.12 -0.07 4.33 -67.12 -0.29 -0.36 16 18 H 0.11 0.08 7.46 -51.93 -0.39 -0.31 16 19 C -0.14 0.26 7.29 -25.92 -0.19 0.07 16 20 C -0.08 0.10 3.78 -90.96 -0.34 -0.25 16 21 H 0.10 -0.07 7.45 -51.93 -0.39 -0.46 16 22 C -0.11 0.06 5.29 -104.55 -0.55 -0.49 16 23 C 0.13 0.11 7.25 -39.43 -0.29 -0.18 16 24 F -0.13 -0.23 16.36 2.25 0.04 -0.19 16 25 C -0.19 -0.10 10.01 -39.45 -0.39 -0.49 16 26 C 0.13 0.08 7.30 -39.43 -0.29 -0.21 16 27 F -0.13 -0.25 17.27 2.25 0.04 -0.21 16 28 C -0.16 0.15 10.02 -39.51 -0.40 -0.24 16 29 C -0.06 0.10 8.61 -39.61 -0.34 -0.24 16 30 C -0.14 0.19 7.25 -25.92 -0.19 0.01 16 31 C -0.06 -0.06 9.20 -38.78 -0.36 -0.42 16 32 O -0.17 -0.59 8.80 4.57 0.04 -0.55 16 33 H 0.39 -2.38 8.74 45.56 0.40 -1.98 16 34 H 0.10 -0.29 7.96 -51.93 -0.41 -0.70 16 35 H -0.25 -0.60 7.11 56.52 0.40 -0.20 16 36 H -0.25 -0.36 7.11 56.52 0.40 0.04 16 37 H 0.16 0.01 8.06 -52.48 -0.42 -0.41 16 38 H 0.16 -0.21 7.25 -52.48 -0.38 -0.59 16 39 H 0.14 -0.40 6.96 -52.49 -0.37 -0.76 16 40 H 0.15 -0.34 8.06 -52.49 -0.42 -0.76 16 41 H 0.40 -0.65 9.06 45.56 0.41 -0.23 16 42 H 0.40 -0.46 6.73 -40.82 -0.27 -0.74 16 43 H 0.10 -0.30 7.72 -51.93 -0.40 -0.70 16 44 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 45 H 0.15 -0.09 8.06 -52.49 -0.42 -0.52 16 46 H 0.15 -0.38 8.06 -52.48 -0.42 -0.81 16 47 H 0.15 -0.56 6.66 -52.48 -0.35 -0.91 16 48 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 49 H 0.10 -0.25 6.31 -51.93 -0.33 -0.58 16 50 H 0.13 0.00 6.24 -52.49 -0.33 -0.33 16 LS Contribution 433.49 15.07 6.53 6.53 Total: 0.00 -11.28 433.49 -11.98 -23.26 By element: Atomic # 1 Polarization: -7.44 SS G_CDS: -4.54 Total: -11.97 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -7.19 Total: -5.18 kcal Atomic # 7 Polarization: -0.25 SS G_CDS: -0.28 Total: -0.53 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -1.13 Total: -5.41 kcal Atomic # 9 Polarization: -0.48 SS G_CDS: 0.08 Total: -0.40 kcal Atomic # 14 Polarization: -0.85 SS G_CDS: -5.46 Total: -6.31 kcal Total LS contribution 6.53 Total: 6.53 kcal Total: -11.28 -11.98 -23.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_13259648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.471 kcal (2) G-P(sol) polarization free energy of solvation -11.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds