Wall clock time and date at job start Sun Mar 7 2021 00:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86304 * 109.46929 * 2 1 4 4 C 1.50700 * 109.47096 * 120.00208 * 2 1 3 5 5 C 1.34702 * 125.66512 * 64.99672 * 4 2 1 6 6 C 1.40965 * 107.02799 * 179.76411 * 5 4 2 7 7 C 1.35935 * 106.74408 * 0.35146 * 6 5 4 8 8 C 1.47820 * 125.93444 * 179.91028 * 7 6 5 9 9 C 1.39806 * 119.99788 * 359.69613 * 8 7 6 10 10 C 1.37811 * 120.24223 * 180.02562 * 9 8 7 11 11 C 1.38772 * 120.24742 * 359.71948 * 10 9 8 12 12 O 1.35653 * 120.00521 * 180.27603 * 11 10 9 13 13 C 1.40254 * 119.99429 * 0.55574 * 11 10 9 14 14 C 1.47559 * 120.12028 * 179.71506 * 13 11 10 15 15 O 1.21588 * 120.00228 * 359.45723 * 14 13 11 16 16 N 1.34784 * 119.99859 * 179.72674 * 14 13 11 17 17 C 1.46499 * 119.99893 * 179.73027 * 16 14 13 18 18 H 1.08994 * 112.85555 * 23.80061 * 17 16 14 19 19 C 1.53777 * 113.61200 * 155.00334 * 17 16 14 20 20 C 1.53781 * 87.08638 * 89.11383 * 19 17 16 21 21 H 1.08999 * 113.60975 * 270.80334 * 20 19 17 22 22 C 1.50699 * 113.61757 * 139.97879 * 20 19 17 23 23 C 1.38455 * 119.98340 * 119.72301 * 22 20 19 24 24 F 1.35100 * 120.01450 * 0.02562 * 23 22 20 25 25 C 1.38443 * 119.96890 * 179.76951 * 23 22 20 26 26 C 1.38393 * 119.94934 * 0.52620 * 25 23 22 27 27 F 1.35103 * 120.01383 * 179.74317 * 26 25 23 28 28 C 1.38490 * 119.97858 * 359.73011 * 26 25 23 29 29 C 1.38187 * 120.02166 * 359.97438 * 28 26 25 30 30 C 1.53776 * 87.07882 * 25.42927 * 20 19 17 31 31 C 1.39213 * 120.00191 * 179.71609 * 8 7 6 32 32 O 1.34346 * 125.66283 * 244.97568 * 4 2 1 33 33 H 0.96707 * 114.00135 * 60.00136 * 1 2 3 34 34 H 1.08995 * 109.47030 * 239.99979 * 2 1 3 35 35 H 1.48499 * 109.99871 * 60.00009 * 3 2 1 36 36 H 1.48497 * 109.99582 * 181.31735 * 3 2 1 37 37 H 1.08003 * 126.48794 * 0.02562 * 5 4 2 38 38 H 1.08003 * 126.63035 * 180.26788 * 6 5 4 39 39 H 1.07999 * 119.87832 * 0.02562 * 9 8 7 40 40 H 1.08002 * 119.87618 * 180.02562 * 10 9 8 41 41 H 0.96697 * 114.00015 * 270.27668 * 12 11 10 42 42 H 0.97005 * 119.99846 * 359.72815 * 16 14 13 43 43 H 1.09002 * 113.61299 * 203.66622 * 19 17 16 44 44 H 1.08999 * 113.61560 * 334.47421 * 19 17 16 45 45 H 1.07999 * 120.02563 * 180.25777 * 25 23 22 46 46 H 1.08004 * 119.99254 * 180.02562 * 28 26 25 47 47 H 1.08005 * 119.97137 * 179.97438 * 29 28 26 48 48 H 1.08998 * 113.61700 * 220.02123 * 30 20 19 49 49 H 1.09006 * 113.61624 * 89.11539 * 30 20 19 50 50 H 1.07997 * 120.12224 * 0.02562 * 31 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.7570 -2.0167 1.5093 6 6 2.3865 -2.2623 2.7464 7 6 2.9088 -1.0781 3.1620 8 6 3.6602 -0.8535 4.4149 9 6 3.8817 -1.9152 5.2971 10 6 4.5812 -1.7113 6.4669 11 6 5.0760 -0.4519 6.7751 12 8 5.7687 -0.2580 7.9252 13 6 4.8547 0.6217 5.9002 14 6 5.3741 1.9634 6.2281 15 8 5.9867 2.1419 7.2632 16 7 5.1648 2.9922 5.3829 17 6 5.6754 4.3255 5.7114 18 1 6.5198 4.2976 6.4000 19 6 5.9142 5.2143 4.4794 20 6 4.4555 5.6778 4.6287 21 1 3.7423 5.0563 4.0872 22 6 4.2607 7.1502 4.3734 23 6 3.4234 7.5709 3.3541 24 9 2.7808 6.6617 2.5888 25 6 3.2410 8.9236 3.1229 26 6 3.9043 9.8537 3.9040 27 9 3.7313 11.1741 3.6762 28 6 4.7454 9.4305 4.9196 29 6 4.9220 8.0801 5.1535 30 6 4.5776 5.3220 6.1198 31 6 4.1471 0.4154 4.7167 32 8 2.6277 -0.1462 2.2312 33 1 -0.3934 0.4417 -0.7651 34 1 1.7923 -0.5138 -0.8899 35 1 1.5614 2.4679 1.2085 36 1 3.5345 1.7703 -0.0321 37 1 1.2373 -2.7401 0.8984 38 1 2.4419 -3.2082 3.2647 39 1 3.5032 -2.8987 5.0610 40 1 4.7493 -2.5358 7.1439 41 1 5.2165 -0.0132 8.6803 42 1 4.6761 2.8498 4.5572 43 1 6.6435 6.0067 4.6475 44 1 6.1036 4.6518 3.5652 45 1 2.5849 9.2528 2.3307 46 1 5.2629 10.1562 5.5296 47 1 5.5785 7.7509 5.9454 48 1 3.6867 4.8464 6.5296 49 1 4.9416 6.1439 6.7364 50 1 3.9765 1.2371 4.0370 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_13259648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:06:54 Heat of formation + Delta-G solvation = -87.046696 kcal Electronic energy + Delta-G solvation = -40526.912893 eV Core-core repulsion = 34897.090515 eV Total energy + Delta-G solvation = -5629.822377 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 428.131 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -50.15036 -50.08034 -43.83986 -41.94044 -41.03413 -39.77619 -38.65103 -38.07845 -37.78496 -34.89405 -34.30428 -32.93768 -32.58898 -31.89558 -31.30237 -30.18074 -26.83921 -26.58151 -26.40809 -25.33102 -24.31987 -23.65158 -23.19029 -22.80202 -21.94037 -21.32452 -20.44505 -19.68952 -19.37433 -19.09330 -18.67906 -18.30233 -18.03255 -17.37508 -17.18331 -17.14275 -17.10793 -16.83187 -16.73675 -16.43715 -16.42000 -16.27310 -16.01854 -15.84457 -15.63848 -15.54139 -15.25817 -15.19032 -14.63320 -14.57829 -14.38725 -14.20753 -14.10438 -13.97811 -13.83704 -13.67880 -13.62993 -13.50843 -13.27316 -13.18727 -12.91014 -12.71330 -12.61554 -12.23661 -12.15982 -11.98164 -11.84063 -11.41806 -11.18531 -11.03214 -10.67198 -10.44853 -10.39666 -10.20716 -10.13097 -9.66077 -9.01935 -5.12875 -0.66949 -0.34313 -0.18417 -0.08493 0.64257 1.12955 1.33746 1.50356 1.59670 1.74770 1.87266 1.94989 2.22571 2.50995 2.76775 3.00759 3.12086 3.20547 3.33514 3.36879 3.41464 3.49919 3.55832 3.60162 3.70326 3.72697 3.77866 3.86824 3.90794 3.95073 3.97972 4.07644 4.10683 4.24241 4.36205 4.48778 4.52692 4.54134 4.62702 4.64299 4.68942 4.72899 4.78040 4.78961 4.81652 4.84996 4.89929 4.91080 4.99514 5.02052 5.04251 5.10040 5.17857 5.35182 5.41078 5.45425 5.67176 5.87040 6.24989 6.66001 6.80856 6.97520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.036 4.036 3 Si 0.790 3.210 4 C -0.034 4.034 5 C -0.174 4.174 6 C -0.184 4.184 7 C 0.013 3.987 8 C -0.045 4.045 9 C -0.042 4.042 10 C -0.142 4.142 11 C 0.169 3.831 12 O -0.491 6.491 13 C -0.179 4.179 14 C 0.562 3.438 15 O -0.550 6.550 16 N -0.706 5.706 17 C 0.114 3.886 18 H 0.101 0.899 19 C -0.124 4.124 20 C -0.075 4.075 21 H 0.091 0.909 22 C -0.113 4.113 23 C 0.112 3.888 24 F -0.141 7.141 25 C -0.196 4.196 26 C 0.110 3.890 27 F -0.140 7.140 28 C -0.152 4.152 29 C -0.054 4.054 30 C -0.134 4.134 31 C -0.059 4.059 32 O -0.194 6.194 33 H 0.413 0.587 34 H 0.125 0.875 35 H -0.304 1.304 36 H -0.290 1.290 37 H 0.173 0.827 38 H 0.184 0.816 39 H 0.170 0.830 40 H 0.171 0.829 41 H 0.412 0.588 42 H 0.405 0.595 43 H 0.120 0.880 44 H 0.078 0.922 45 H 0.153 0.847 46 H 0.165 0.835 47 H 0.173 0.827 48 H 0.066 0.934 49 H 0.118 0.882 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.006 -1.827 -3.949 4.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.145 4.145 3 Si 0.696 3.304 4 C -0.083 4.083 5 C -0.193 4.193 6 C -0.203 4.203 7 C -0.036 4.036 8 C -0.045 4.045 9 C -0.060 4.060 10 C -0.160 4.160 11 C 0.122 3.878 12 O -0.305 6.305 13 C -0.183 4.183 14 C 0.350 3.650 15 O -0.428 6.428 16 N -0.357 5.357 17 C 0.009 3.991 18 H 0.119 0.881 19 C -0.162 4.162 20 C -0.093 4.093 21 H 0.110 0.890 22 C -0.114 4.114 23 C 0.093 3.907 24 F -0.119 7.119 25 C -0.215 4.215 26 C 0.090 3.910 27 F -0.119 7.119 28 C -0.171 4.171 29 C -0.072 4.072 30 C -0.173 4.173 31 C -0.078 4.078 32 O -0.093 6.093 33 H 0.266 0.734 34 H 0.143 0.857 35 H -0.232 1.232 36 H -0.217 1.217 37 H 0.190 0.810 38 H 0.201 0.799 39 H 0.187 0.813 40 H 0.188 0.812 41 H 0.273 0.727 42 H 0.242 0.758 43 H 0.138 0.862 44 H 0.096 0.904 45 H 0.170 0.830 46 H 0.183 0.817 47 H 0.190 0.810 48 H 0.085 0.915 49 H 0.136 0.864 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.477 -1.212 -2.620 2.926 hybrid contribution -1.041 -0.210 -0.304 1.104 sum -1.518 -1.422 -2.924 3.588 Atomic orbital electron populations 1.86415 1.16148 1.82528 1.52078 1.23914 0.86449 1.11420 0.92762 0.94404 0.77408 0.74289 0.84284 1.22082 1.00848 0.93605 0.91733 1.21866 1.03286 0.95727 0.98374 1.22236 1.01650 0.98954 0.97443 1.20624 1.04180 0.87936 0.90861 1.17761 1.00402 0.94661 0.91671 1.21446 0.94444 0.99024 0.91076 1.21634 0.98348 0.97097 0.98930 1.18841 0.89513 0.91550 0.87888 1.84705 1.36179 1.91129 1.18484 1.20264 1.05522 0.94085 0.98444 1.18180 0.79063 0.84371 0.83412 1.90801 1.41487 1.84713 1.25817 1.45630 1.57641 1.08422 1.24051 1.21933 0.97714 0.80662 0.98748 0.88097 1.23452 0.95699 0.99279 0.97795 1.21505 0.98679 0.90777 0.98388 0.89046 1.19928 0.98395 0.97097 0.96018 1.17358 0.95348 0.85740 0.92247 1.91497 1.79969 1.66306 1.74141 1.21157 1.04915 0.91449 1.04002 1.17546 0.98790 0.77328 0.97293 1.91532 1.94215 1.32075 1.94075 1.21531 0.99559 0.97988 0.98006 1.21062 0.97327 0.90500 0.98285 1.23585 0.99260 0.99426 0.94980 1.21294 0.94545 0.97073 0.94858 1.83930 1.58949 1.39152 1.27295 0.73402 0.85724 1.23159 1.21685 0.80999 0.79922 0.81304 0.81185 0.72704 0.75819 0.86174 0.90361 0.82957 0.81742 0.80962 0.91509 0.86431 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.11 12.86 -148.98 -1.92 -0.81 16 2 C -0.04 0.06 2.97 71.24 0.21 0.27 16 3 Si 0.79 -1.04 32.11 68.60 2.20 1.16 16 4 C -0.03 -0.18 6.24 24.87 0.16 -0.02 16 5 C -0.17 -0.54 10.78 22.13 0.24 -0.30 16 6 C -0.18 -0.36 10.26 22.40 0.23 -0.13 16 7 C 0.01 0.07 7.03 24.27 0.17 0.24 16 8 C -0.04 -0.14 5.87 -20.13 -0.12 -0.25 16 9 C -0.04 0.07 9.54 22.55 0.22 0.29 16 10 C -0.14 0.16 9.96 22.30 0.22 0.38 16 11 C 0.17 0.70 6.72 22.89 0.15 0.86 16 12 O -0.49 -2.68 11.55 -68.69 -0.79 -3.47 16 13 C -0.18 -1.00 5.88 -20.04 -0.12 -1.12 16 14 C 0.56 4.38 7.76 86.70 0.67 5.06 16 15 O -0.55 -7.59 14.74 16.99 0.25 -7.34 16 16 N -0.71 -1.75 5.21 -443.18 -2.31 -4.06 16 17 C 0.11 -0.02 4.33 45.52 0.20 0.18 16 18 H 0.10 0.24 7.46 -2.39 -0.02 0.22 16 19 C -0.12 0.46 7.29 31.12 0.23 0.69 16 20 C -0.08 0.14 3.78 -11.02 -0.04 0.10 16 21 H 0.09 0.03 7.45 -2.39 -0.02 0.01 16 22 C -0.11 0.09 5.29 -19.82 -0.10 -0.01 16 23 C 0.11 0.31 7.25 22.37 0.16 0.48 16 24 F -0.14 -0.78 16.36 44.97 0.74 -0.05 16 25 C -0.20 -0.44 10.01 22.36 0.22 -0.22 16 26 C 0.11 0.19 7.30 22.37 0.16 0.35 16 27 F -0.14 -0.63 17.27 44.97 0.78 0.14 16 28 C -0.15 0.41 10.02 22.32 0.22 0.64 16 29 C -0.05 0.24 8.61 22.25 0.19 0.43 16 30 C -0.13 0.32 7.25 31.12 0.23 0.55 16 31 C -0.06 -0.23 9.20 22.79 0.21 -0.02 16 32 O -0.19 -1.60 8.80 -6.57 -0.06 -1.66 16 33 H 0.41 -5.51 8.74 -74.05 -0.65 -6.16 16 34 H 0.13 -0.96 7.96 -2.39 -0.02 -0.98 16 35 H -0.30 -2.39 7.11 99.48 0.71 -1.69 16 36 H -0.29 -1.38 7.11 99.48 0.71 -0.67 16 37 H 0.17 -0.18 8.06 -2.91 -0.02 -0.20 16 38 H 0.18 -0.85 7.25 -2.91 -0.02 -0.87 16 39 H 0.17 -1.33 6.96 -2.91 -0.02 -1.35 16 40 H 0.17 -1.05 8.06 -2.91 -0.02 -1.07 16 41 H 0.41 -0.78 9.06 -74.06 -0.67 -1.45 16 42 H 0.41 -0.08 6.73 -92.70 -0.62 -0.70 16 43 H 0.12 -0.83 7.72 -2.39 -0.02 -0.85 16 44 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 45 H 0.15 0.08 8.06 -2.91 -0.02 0.05 16 46 H 0.16 -1.14 8.06 -2.91 -0.02 -1.16 16 47 H 0.17 -1.74 6.66 -2.91 -0.02 -1.76 16 48 H 0.07 0.02 8.14 -2.39 -0.02 0.01 16 49 H 0.12 -0.72 6.31 -2.38 -0.02 -0.74 16 50 H 0.13 0.33 6.24 -2.91 -0.02 0.31 16 Total: 0.00 -28.73 433.49 1.77 -26.96 By element: Atomic # 1 Polarization: -18.47 SS G_CDS: -0.83 Total: -19.30 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 3.71 Total: 8.42 kcal Atomic # 7 Polarization: -1.75 SS G_CDS: -2.31 Total: -4.06 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -2.52 Total: -13.28 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 1.51 Total: 0.10 kcal Atomic # 14 Polarization: -1.04 SS G_CDS: 2.20 Total: 1.16 kcal Total: -28.73 1.77 -26.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_13259648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.087 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds