Wall clock time and date at job start Sun Mar 7 2021 00:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50696 * 109.47131 * 240.00209 * 2 1 3 5 5 C 1.34187 * 126.54411 * 104.68470 * 4 2 1 6 6 N 1.36868 * 109.96941 * 179.89012 * 5 4 2 7 7 C 1.37397 * 109.97814 * 0.38535 * 6 5 4 8 8 C 1.39335 * 133.25440 * 179.77606 * 7 6 5 9 9 C 1.36349 * 120.23961 * 180.02562 * 8 7 6 10 10 C 1.40173 * 120.67019 * 359.95696 * 9 8 7 11 11 C 1.47652 * 119.97483 * 179.97438 * 10 9 8 12 12 O 1.21581 * 119.99813 * 180.02562 * 11 10 9 13 13 N 1.34773 * 120.00165 * 0.02841 * 11 10 9 14 14 C 1.46499 * 120.00222 * 179.97438 * 13 11 10 15 15 H 1.08998 * 112.84738 * 23.79931 * 14 13 11 16 16 C 1.53789 * 113.61503 * 154.99596 * 14 13 11 17 17 C 1.53782 * 87.07844 * 89.11556 * 16 14 13 18 18 H 1.09003 * 113.61614 * 270.88370 * 17 16 14 19 19 C 1.50702 * 113.61240 * 139.98339 * 17 16 14 20 20 C 1.38451 * 119.98728 * 119.99630 * 19 17 16 21 21 F 1.35099 * 120.01588 * 0.02562 * 20 19 17 22 22 C 1.38444 * 119.97099 * 179.97438 * 20 19 17 23 23 C 1.38396 * 119.95303 * 0.02562 * 22 20 19 24 24 F 1.35094 * 120.01393 * 180.02562 * 23 22 20 25 25 C 1.38498 * 119.97398 * 0.02562 * 23 22 20 26 26 C 1.38193 * 120.02241 * 359.74292 * 25 23 22 27 27 C 1.53775 * 87.08595 * 25.43204 * 17 16 14 28 28 C 1.39189 * 120.05179 * 0.02562 * 10 9 8 29 29 C 1.39231 * 119.39207 * 359.97438 * 28 10 9 30 30 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 31 31 H 1.08999 * 109.47293 * 119.99810 * 2 1 3 32 32 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 33 33 H 1.48492 * 109.99800 * 181.32238 * 3 2 1 34 34 H 1.08004 * 125.01494 * 0.03677 * 5 4 2 35 35 H 0.96999 * 125.00536 * 180.15983 * 6 5 4 36 36 H 1.07999 * 119.87624 * 359.97438 * 8 7 6 37 37 H 1.07997 * 119.66552 * 179.97438 * 9 8 7 38 38 H 0.97011 * 119.99884 * 359.97438 * 13 11 10 39 39 H 1.08992 * 113.61306 * 203.66411 * 16 14 13 40 40 H 1.08998 * 113.61296 * 334.57111 * 16 14 13 41 41 H 1.08004 * 120.02033 * 180.02562 * 22 20 19 42 42 H 1.07989 * 119.98807 * 179.97438 * 25 23 22 43 43 H 1.07993 * 119.97214 * 180.25289 * 26 25 23 44 44 H 1.08995 * 113.61888 * 220.02007 * 27 17 16 45 45 H 1.09003 * 113.61447 * 89.11184 * 27 17 16 46 46 H 1.08001 * 120.30644 * 179.97438 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 2.4553 -0.1383 -2.3253 6 7 2.8016 -1.1004 -3.2352 7 6 2.4946 -2.3454 -2.7417 8 6 2.6332 -3.6350 -3.2507 9 6 2.2294 -4.7103 -2.5160 10 6 1.6715 -4.5368 -1.2418 11 6 1.2389 -5.7121 -0.4597 12 8 0.7545 -5.5621 0.6453 13 7 1.3810 -6.9511 -0.9707 14 6 0.9523 -8.1172 -0.1944 15 1 0.1921 -7.8751 0.5481 16 6 0.6008 -9.3384 -1.0605 17 6 2.0804 -9.7430 -0.9515 18 1 2.7078 -9.3199 -1.7360 19 6 2.2892 -11.2243 -0.7685 20 6 3.0211 -11.9403 -1.7004 21 9 3.5485 -11.3113 -2.7735 22 6 3.2132 -13.3009 -1.5317 23 6 2.6728 -13.9439 -0.4317 24 9 2.8599 -15.2714 -0.2655 25 6 1.9401 -13.2257 0.4987 26 6 1.7531 -11.8667 0.3318 27 6 2.1195 -8.9482 0.3643 28 6 1.5240 -3.2575 -0.7137 29 6 1.9356 -2.1578 -1.4619 30 1 -0.3934 0.4416 -0.7651 31 1 1.7924 -0.5138 0.8900 32 1 1.5613 2.4680 1.2084 33 1 3.5344 1.7705 -0.0322 34 1 2.5869 0.9244 -2.4667 35 1 3.2014 -0.9283 -4.1020 36 1 3.0613 -3.7833 -4.2311 37 1 2.3408 -5.7057 -2.9197 38 1 1.7672 -7.0707 -1.8525 39 1 -0.0799 -10.0371 -0.5743 40 1 0.2921 -9.0809 -2.0737 41 1 3.7844 -13.8602 -2.2579 42 1 1.5180 -13.7273 1.3569 43 1 1.1851 -11.3069 1.0599 44 1 3.0367 -8.3756 0.5015 45 1 1.8539 -9.5403 1.2402 46 1 1.0943 -3.1191 0.2674 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13428180_13287722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:01 Heat of formation + Delta-G solvation = -38.938069 kcal Electronic energy + Delta-G solvation = -33494.883270 eV Core-core repulsion = 28567.311653 eV Total energy + Delta-G solvation = -4927.571617 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.128 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -50.04211 -49.98843 -42.51091 -41.56453 -40.25484 -38.81101 -37.86479 -37.35552 -34.56399 -33.28047 -31.99470 -31.66205 -30.74789 -30.33398 -26.85432 -26.51639 -26.41206 -24.88670 -24.16376 -23.50837 -22.88029 -21.69305 -20.80525 -20.30893 -19.40994 -19.28493 -18.52998 -18.18996 -17.52241 -17.44618 -17.16396 -17.01953 -16.87083 -16.57985 -16.31793 -16.21866 -15.96300 -15.75757 -15.55680 -15.48817 -15.30128 -15.17212 -14.97806 -14.77635 -14.64991 -14.07630 -14.04841 -13.88091 -13.82508 -13.61884 -13.59859 -13.47774 -12.90688 -12.62376 -12.57420 -12.29416 -12.19719 -12.14413 -11.88692 -11.79090 -11.38679 -10.85865 -10.80431 -10.33008 -10.17175 -10.05674 -9.62906 -9.34602 -8.84910 -5.09187 -0.16262 -0.08933 -0.06952 0.16715 1.29836 1.45731 1.64399 1.95396 1.96848 1.99363 2.10524 2.22278 2.79691 2.94282 3.22669 3.38000 3.41840 3.53301 3.56518 3.57961 3.58316 3.71513 3.76055 3.79091 3.82082 3.85174 3.96735 4.05467 4.10086 4.34379 4.40265 4.47577 4.52245 4.55520 4.57895 4.66112 4.71952 4.75009 4.78950 4.81732 4.85545 4.91879 4.99068 5.00314 5.01652 5.19673 5.23261 5.35631 5.47396 5.58083 5.59034 5.67194 5.96030 6.33949 6.52408 6.68604 7.30040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.034 4.034 3 Si 0.687 3.313 4 C -0.192 4.192 5 C 0.061 3.939 6 N -0.585 5.585 7 C 0.119 3.881 8 C -0.133 4.133 9 C -0.067 4.067 10 C -0.169 4.169 11 C 0.568 3.432 12 O -0.535 6.535 13 N -0.712 5.712 14 C 0.122 3.878 15 H 0.109 0.891 16 C -0.135 4.135 17 C -0.076 4.076 18 H 0.103 0.897 19 C -0.114 4.114 20 C 0.133 3.867 21 F -0.129 7.129 22 C -0.190 4.190 23 C 0.127 3.873 24 F -0.130 7.130 25 C -0.159 4.159 26 C -0.060 4.060 27 C -0.143 4.143 28 C 0.008 3.992 29 C -0.103 4.103 30 H 0.377 0.623 31 H 0.113 0.887 32 H -0.254 1.254 33 H -0.256 1.256 34 H 0.179 0.821 35 H 0.421 0.579 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.400 0.600 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.078 0.922 45 H 0.097 0.903 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.689 3.070 -5.807 6.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.146 4.146 3 Si 0.588 3.412 4 C -0.199 4.199 5 C -0.065 4.065 6 N -0.187 5.187 7 C 0.010 3.990 8 C -0.154 4.154 9 C -0.087 4.087 10 C -0.174 4.174 11 C 0.357 3.643 12 O -0.412 6.412 13 N -0.364 5.364 14 C 0.016 3.984 15 H 0.127 0.873 16 C -0.173 4.173 17 C -0.094 4.094 18 H 0.121 0.879 19 C -0.115 4.115 20 C 0.113 3.887 21 F -0.107 7.107 22 C -0.210 4.210 23 C 0.107 3.893 24 F -0.109 7.109 25 C -0.178 4.178 26 C -0.078 4.078 27 C -0.182 4.182 28 C -0.011 4.011 29 C -0.108 4.108 30 H 0.224 0.776 31 H 0.130 0.870 32 H -0.178 1.178 33 H -0.181 1.181 34 H 0.196 0.804 35 H 0.259 0.741 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.236 0.764 39 H 0.119 0.881 40 H 0.098 0.902 41 H 0.167 0.833 42 H 0.162 0.838 43 H 0.164 0.836 44 H 0.096 0.904 45 H 0.116 0.884 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.993 3.504 -4.166 5.534 hybrid contribution 0.839 -0.950 -1.069 1.658 sum 1.832 2.555 -5.235 6.106 Atomic orbital electron populations 1.86539 1.17263 1.81726 1.48911 1.24410 0.84902 1.09003 0.96246 0.95336 0.80646 0.77180 0.88005 1.20765 1.09327 0.91964 0.97879 1.21687 1.01040 0.94291 0.89474 1.41739 1.54587 1.04126 1.18281 1.18437 0.99805 0.86530 0.94216 1.19667 1.05742 0.88853 1.01145 1.20581 0.96736 0.98349 0.92988 1.19514 1.08368 0.93202 0.96281 1.18174 0.77677 0.82761 0.85681 1.90801 1.44245 1.85986 1.20163 1.45562 1.64745 1.05195 1.20935 1.21812 0.97424 0.84390 0.94735 0.87284 1.23451 0.95472 0.96885 1.01460 1.21565 0.98213 0.89742 0.99881 0.87871 1.19810 0.99971 0.96420 0.95293 1.17139 0.96409 0.89784 0.85334 1.91525 1.84243 1.82090 1.52878 1.21076 1.05554 0.94036 1.00297 1.17338 0.98559 0.78044 0.95325 1.91557 1.93403 1.30676 1.95233 1.21261 1.01256 0.94855 1.00400 1.20786 0.97453 0.93233 0.96316 1.23593 1.00041 0.97917 0.96611 1.20702 0.92359 0.89204 0.98872 1.18925 1.04558 0.92972 0.94303 0.77648 0.87002 1.17824 1.18099 0.80427 0.74090 0.85420 0.85450 0.76406 0.88083 0.90194 0.83336 0.83754 0.83639 0.90358 0.88443 0.84365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.55 12.88 -35.23 -0.45 -1.01 16 2 C -0.03 -0.01 3.06 36.00 0.11 0.10 16 3 Si 0.69 -1.12 30.76 -169.99 -5.23 -6.35 16 4 C -0.19 -0.07 5.58 -102.69 -0.57 -0.64 16 5 C 0.06 -0.14 10.43 -16.73 -0.17 -0.31 16 6 N -0.59 1.31 6.05 -10.61 -0.06 1.25 16 7 C 0.12 0.04 7.27 -83.95 -0.61 -0.57 16 8 C -0.13 0.10 10.00 -39.85 -0.40 -0.30 16 9 C -0.07 0.03 9.46 -39.54 -0.37 -0.34 16 10 C -0.17 -0.36 5.87 -104.97 -0.62 -0.98 16 11 C 0.57 1.77 7.76 -12.42 -0.10 1.67 16 12 O -0.53 -3.71 15.93 5.29 0.08 -3.62 16 13 N -0.71 0.15 5.21 -54.01 -0.28 -0.14 16 14 C 0.12 -0.08 4.33 -67.11 -0.29 -0.38 16 15 H 0.11 0.09 7.46 -51.93 -0.39 -0.29 16 16 C -0.13 0.32 7.29 -25.91 -0.19 0.13 16 17 C -0.08 0.13 3.78 -90.96 -0.34 -0.21 16 18 H 0.10 -0.18 7.45 -51.93 -0.39 -0.57 16 19 C -0.11 0.08 5.29 -104.55 -0.55 -0.47 16 20 C 0.13 0.08 7.25 -39.43 -0.29 -0.21 16 21 F -0.13 -0.17 16.36 2.25 0.04 -0.14 16 22 C -0.19 -0.10 10.01 -39.45 -0.39 -0.50 16 23 C 0.13 0.09 7.30 -39.43 -0.29 -0.20 16 24 F -0.13 -0.26 17.27 2.25 0.04 -0.23 16 25 C -0.16 0.14 10.03 -39.50 -0.40 -0.25 16 26 C -0.06 0.10 8.61 -39.60 -0.34 -0.24 16 27 C -0.14 0.20 7.25 -25.92 -0.19 0.01 16 28 C 0.01 0.03 9.64 -38.86 -0.37 -0.35 16 29 C -0.10 -0.23 6.34 -105.15 -0.67 -0.89 16 30 H 0.38 -1.20 8.70 45.56 0.40 -0.81 16 31 H 0.11 0.16 7.96 -51.93 -0.41 -0.25 16 32 H -0.25 -0.51 7.11 56.52 0.40 -0.11 16 33 H -0.26 -0.19 7.11 56.52 0.40 0.21 16 34 H 0.18 -1.05 6.36 -52.48 -0.33 -1.39 16 35 H 0.42 -2.23 8.96 -40.82 -0.37 -2.60 16 36 H 0.13 -0.40 8.06 -52.49 -0.42 -0.83 16 37 H 0.13 -0.43 6.36 -52.49 -0.33 -0.76 16 38 H 0.40 -1.05 6.70 -40.82 -0.27 -1.33 16 39 H 0.10 -0.31 7.73 -51.93 -0.40 -0.71 16 40 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 41 H 0.15 -0.08 8.06 -52.48 -0.42 -0.50 16 42 H 0.14 -0.37 8.06 -52.49 -0.42 -0.79 16 43 H 0.15 -0.55 6.64 -52.49 -0.35 -0.90 16 44 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 45 H 0.10 -0.23 6.30 -51.93 -0.33 -0.56 16 46 H 0.14 0.62 7.64 -52.49 -0.40 0.21 16 LS Contribution 393.96 15.07 5.94 5.94 Total: 0.00 -10.40 393.96 -11.86 -22.26 By element: Atomic # 1 Polarization: -8.16 SS G_CDS: -4.89 Total: -13.05 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -7.04 Total: -4.92 kcal Atomic # 7 Polarization: 1.46 SS G_CDS: -0.35 Total: 1.11 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.37 Total: -4.63 kcal Atomic # 9 Polarization: -0.44 SS G_CDS: 0.08 Total: -0.36 kcal Atomic # 14 Polarization: -1.12 SS G_CDS: -5.23 Total: -6.35 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -10.40 -11.86 -22.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_13287722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.674 kcal (2) G-P(sol) polarization free energy of solvation -10.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds