Wall clock time and date at job start Sun Mar 7 2021 00:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50696 * 109.47131 * 240.00209 * 2 1 3 5 5 C 1.34187 * 126.54411 * 104.68470 * 4 2 1 6 6 N 1.36868 * 109.96941 * 179.89012 * 5 4 2 7 7 C 1.37397 * 109.97814 * 0.38535 * 6 5 4 8 8 C 1.39335 * 133.25440 * 179.77606 * 7 6 5 9 9 C 1.36349 * 120.23961 * 180.02562 * 8 7 6 10 10 C 1.40173 * 120.67019 * 359.95696 * 9 8 7 11 11 C 1.47652 * 119.97483 * 179.97438 * 10 9 8 12 12 O 1.21581 * 119.99813 * 180.02562 * 11 10 9 13 13 N 1.34773 * 120.00165 * 0.02841 * 11 10 9 14 14 C 1.46499 * 120.00222 * 179.97438 * 13 11 10 15 15 H 1.08998 * 112.84738 * 23.79931 * 14 13 11 16 16 C 1.53789 * 113.61503 * 154.99596 * 14 13 11 17 17 C 1.53782 * 87.07844 * 89.11556 * 16 14 13 18 18 H 1.09003 * 113.61614 * 270.88370 * 17 16 14 19 19 C 1.50702 * 113.61240 * 139.98339 * 17 16 14 20 20 C 1.38451 * 119.98728 * 119.99630 * 19 17 16 21 21 F 1.35099 * 120.01588 * 0.02562 * 20 19 17 22 22 C 1.38444 * 119.97099 * 179.97438 * 20 19 17 23 23 C 1.38396 * 119.95303 * 0.02562 * 22 20 19 24 24 F 1.35094 * 120.01393 * 180.02562 * 23 22 20 25 25 C 1.38498 * 119.97398 * 0.02562 * 23 22 20 26 26 C 1.38193 * 120.02241 * 359.74292 * 25 23 22 27 27 C 1.53775 * 87.08595 * 25.43204 * 17 16 14 28 28 C 1.39189 * 120.05179 * 0.02562 * 10 9 8 29 29 C 1.39231 * 119.39207 * 359.97438 * 28 10 9 30 30 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 31 31 H 1.08999 * 109.47293 * 119.99810 * 2 1 3 32 32 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 33 33 H 1.48492 * 109.99800 * 181.32238 * 3 2 1 34 34 H 1.08004 * 125.01494 * 0.03677 * 5 4 2 35 35 H 0.96999 * 125.00536 * 180.15983 * 6 5 4 36 36 H 1.07999 * 119.87624 * 359.97438 * 8 7 6 37 37 H 1.07997 * 119.66552 * 179.97438 * 9 8 7 38 38 H 0.97011 * 119.99884 * 359.97438 * 13 11 10 39 39 H 1.08992 * 113.61306 * 203.66411 * 16 14 13 40 40 H 1.08998 * 113.61296 * 334.57111 * 16 14 13 41 41 H 1.08004 * 120.02033 * 180.02562 * 22 20 19 42 42 H 1.07989 * 119.98807 * 179.97438 * 25 23 22 43 43 H 1.07993 * 119.97214 * 180.25289 * 26 25 23 44 44 H 1.08995 * 113.61888 * 220.02007 * 27 17 16 45 45 H 1.09003 * 113.61447 * 89.11184 * 27 17 16 46 46 H 1.08001 * 120.30644 * 179.97438 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 2.4553 -0.1383 -2.3253 6 7 2.8016 -1.1004 -3.2352 7 6 2.4946 -2.3454 -2.7417 8 6 2.6332 -3.6350 -3.2507 9 6 2.2294 -4.7103 -2.5160 10 6 1.6715 -4.5368 -1.2418 11 6 1.2389 -5.7121 -0.4597 12 8 0.7545 -5.5621 0.6453 13 7 1.3810 -6.9511 -0.9707 14 6 0.9523 -8.1172 -0.1944 15 1 0.1921 -7.8751 0.5481 16 6 0.6008 -9.3384 -1.0605 17 6 2.0804 -9.7430 -0.9515 18 1 2.7078 -9.3199 -1.7360 19 6 2.2892 -11.2243 -0.7685 20 6 3.0211 -11.9403 -1.7004 21 9 3.5485 -11.3113 -2.7735 22 6 3.2132 -13.3009 -1.5317 23 6 2.6728 -13.9439 -0.4317 24 9 2.8599 -15.2714 -0.2655 25 6 1.9401 -13.2257 0.4987 26 6 1.7531 -11.8667 0.3318 27 6 2.1195 -8.9482 0.3643 28 6 1.5240 -3.2575 -0.7137 29 6 1.9356 -2.1578 -1.4619 30 1 -0.3934 0.4416 -0.7651 31 1 1.7924 -0.5138 0.8900 32 1 1.5613 2.4680 1.2084 33 1 3.5344 1.7705 -0.0322 34 1 2.5869 0.9244 -2.4667 35 1 3.2014 -0.9283 -4.1020 36 1 3.0613 -3.7833 -4.2311 37 1 2.3408 -5.7057 -2.9197 38 1 1.7672 -7.0707 -1.8525 39 1 -0.0799 -10.0371 -0.5743 40 1 0.2921 -9.0809 -2.0737 41 1 3.7844 -13.8602 -2.2579 42 1 1.5180 -13.7273 1.3569 43 1 1.1851 -11.3069 1.0599 44 1 3.0367 -8.3756 0.5015 45 1 1.8539 -9.5403 1.2402 46 1 1.0943 -3.1191 0.2674 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_13287722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:00 Heat of formation + Delta-G solvation = -37.906891 kcal Electronic energy + Delta-G solvation = -33494.838555 eV Core-core repulsion = 28567.311653 eV Total energy + Delta-G solvation = -4927.526902 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.128 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -50.07585 -50.04993 -42.46259 -41.56933 -40.33247 -38.79552 -37.91053 -37.39360 -34.67586 -33.25976 -31.95569 -31.63268 -30.74667 -30.31401 -26.73671 -26.49109 -26.39381 -24.90223 -24.13690 -23.47625 -22.85501 -21.75796 -20.78372 -20.28355 -19.40720 -19.27099 -18.53492 -18.18645 -17.56340 -17.42725 -17.09631 -17.05372 -16.85789 -16.62837 -16.37855 -16.23411 -16.03431 -15.83325 -15.55357 -15.50590 -15.26197 -15.13619 -14.96690 -14.78571 -14.71395 -14.07887 -14.02005 -13.81524 -13.77598 -13.59761 -13.53926 -13.44682 -12.88251 -12.60576 -12.56258 -12.36229 -12.19666 -12.06159 -11.92879 -11.74203 -11.32227 -11.11599 -10.80485 -10.32595 -10.18955 -10.09103 -9.60418 -9.33026 -8.80657 -5.00924 -0.17052 -0.13121 -0.03865 0.19864 1.35759 1.53157 1.71166 1.81489 2.02616 2.05167 2.13601 2.27466 2.81629 2.86850 3.29058 3.44007 3.48010 3.60105 3.62352 3.66163 3.66674 3.72959 3.86095 3.86659 3.92749 3.93348 4.06908 4.13082 4.17669 4.36792 4.44820 4.53248 4.58339 4.61492 4.69603 4.73087 4.77534 4.82535 4.85136 4.90248 4.90770 4.99477 4.99926 5.07277 5.10669 5.25702 5.26308 5.33969 5.47533 5.57871 5.58586 5.72005 5.98278 6.47071 6.60661 6.88034 7.15615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.053 4.053 3 Si 0.811 3.189 4 C -0.227 4.227 5 C 0.087 3.913 6 N -0.571 5.571 7 C 0.110 3.890 8 C -0.125 4.125 9 C -0.069 4.069 10 C -0.179 4.179 11 C 0.564 3.436 12 O -0.586 6.586 13 N -0.696 5.696 14 C 0.112 3.888 15 H 0.091 0.909 16 C -0.121 4.121 17 C -0.070 4.070 18 H 0.105 0.895 19 C -0.111 4.111 20 C 0.117 3.883 21 F -0.136 7.136 22 C -0.198 4.198 23 C 0.107 3.893 24 F -0.142 7.142 25 C -0.155 4.155 26 C -0.056 4.056 27 C -0.139 4.139 28 C -0.024 4.024 29 C -0.129 4.129 30 H 0.393 0.607 31 H 0.083 0.917 32 H -0.308 1.308 33 H -0.280 1.280 34 H 0.221 0.779 35 H 0.439 0.561 36 H 0.161 0.839 37 H 0.158 0.842 38 H 0.414 0.586 39 H 0.113 0.887 40 H 0.087 0.913 41 H 0.151 0.849 42 H 0.161 0.839 43 H 0.170 0.830 44 H 0.066 0.934 45 H 0.110 0.890 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.329 3.711 -8.252 9.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.162 4.162 3 Si 0.716 3.284 4 C -0.234 4.234 5 C -0.040 4.040 6 N -0.175 5.175 7 C 0.000 4.000 8 C -0.145 4.145 9 C -0.088 4.088 10 C -0.184 4.184 11 C 0.353 3.647 12 O -0.467 6.467 13 N -0.348 5.348 14 C 0.007 3.993 15 H 0.109 0.891 16 C -0.159 4.159 17 C -0.088 4.088 18 H 0.123 0.877 19 C -0.112 4.112 20 C 0.098 3.902 21 F -0.115 7.115 22 C -0.217 4.217 23 C 0.088 3.912 24 F -0.121 7.121 25 C -0.174 4.174 26 C -0.074 4.074 27 C -0.178 4.178 28 C -0.043 4.043 29 C -0.134 4.134 30 H 0.243 0.757 31 H 0.101 0.899 32 H -0.236 1.236 33 H -0.207 1.207 34 H 0.237 0.763 35 H 0.281 0.719 36 H 0.179 0.821 37 H 0.176 0.824 38 H 0.252 0.748 39 H 0.131 0.869 40 H 0.106 0.894 41 H 0.169 0.831 42 H 0.179 0.821 43 H 0.187 0.813 44 H 0.085 0.915 45 H 0.128 0.872 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.641 4.090 -6.699 8.019 hybrid contribution 0.627 -1.151 -0.265 1.337 sum 2.268 2.940 -6.963 7.892 Atomic orbital electron populations 1.86487 1.18113 1.82421 1.50251 1.24748 0.84614 1.11228 0.95570 0.94050 0.76941 0.72440 0.84988 1.20859 1.11898 0.91493 0.99179 1.22250 0.97942 0.95892 0.87928 1.41787 1.53680 1.03116 1.18922 1.18626 0.99737 0.87952 0.93636 1.20064 1.04302 0.88061 1.02103 1.20865 0.96093 1.00181 0.91704 1.19570 1.09093 0.92209 0.97487 1.18455 0.77098 0.83941 0.85158 1.90764 1.46817 1.86758 1.22376 1.45450 1.63597 1.04387 1.21338 1.21902 0.97615 0.84651 0.95146 0.89129 1.23419 0.95264 0.95648 1.01575 1.21529 0.98656 0.89065 0.99561 0.87693 1.19957 0.99378 0.96760 0.95137 1.17286 0.97274 0.89933 0.85705 1.91501 1.84501 1.82170 1.53307 1.21166 1.05748 0.94283 1.00528 1.17561 0.99725 0.77761 0.96148 1.91523 1.93650 1.31546 1.95360 1.21511 1.00351 0.95166 1.00338 1.21065 0.97013 0.93033 0.96290 1.23598 0.99040 0.97723 0.97406 1.20599 0.94556 0.90839 0.98350 1.19224 1.05080 0.93657 0.95397 0.75681 0.89894 1.23588 1.20678 0.76271 0.71914 0.82124 0.82415 0.74778 0.86872 0.89414 0.83076 0.82088 0.81264 0.91501 0.87203 0.87624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.47 12.88 -148.98 -1.92 -4.39 16 2 C -0.05 -0.13 3.06 71.23 0.22 0.08 16 3 Si 0.81 -2.67 30.76 68.60 2.11 -0.56 16 4 C -0.23 -0.36 5.58 -18.61 -0.10 -0.47 16 5 C 0.09 -0.54 10.43 82.98 0.87 0.32 16 6 N -0.57 3.76 6.05 -187.48 -1.13 2.63 16 7 C 0.11 0.01 7.27 39.19 0.28 0.29 16 8 C -0.13 0.37 10.00 22.09 0.22 0.59 16 9 C -0.07 0.09 9.46 22.30 0.21 0.30 16 10 C -0.18 -1.16 5.87 -20.09 -0.12 -1.28 16 11 C 0.56 4.92 7.76 86.73 0.67 5.60 16 12 O -0.59 -10.50 15.93 -3.97 -0.06 -10.56 16 13 N -0.70 -0.28 5.21 -443.07 -2.31 -2.59 16 14 C 0.11 -0.09 4.33 45.52 0.20 0.10 16 15 H 0.09 0.31 7.46 -2.39 -0.02 0.29 16 16 C -0.12 0.68 7.29 31.12 0.23 0.91 16 17 C -0.07 0.30 3.78 -11.01 -0.04 0.26 16 18 H 0.10 -0.46 7.45 -2.39 -0.02 -0.47 16 19 C -0.11 0.24 5.29 -19.82 -0.10 0.14 16 20 C 0.12 0.14 7.25 22.37 0.16 0.30 16 21 F -0.14 -0.38 16.36 44.97 0.74 0.36 16 22 C -0.20 -0.31 10.01 22.36 0.22 -0.09 16 23 C 0.11 0.18 7.30 22.37 0.16 0.35 16 24 F -0.14 -0.68 17.27 44.97 0.78 0.10 16 25 C -0.15 0.39 10.03 22.32 0.22 0.61 16 26 C -0.06 0.26 8.61 22.26 0.19 0.45 16 27 C -0.14 0.40 7.25 31.12 0.23 0.62 16 28 C -0.02 -0.25 9.64 22.74 0.22 -0.03 16 29 C -0.13 -0.80 6.34 -20.21 -0.13 -0.92 16 30 H 0.39 -2.07 8.70 -74.06 -0.64 -2.72 16 31 H 0.08 0.59 7.96 -2.39 -0.02 0.57 16 32 H -0.31 -1.71 7.11 99.48 0.71 -1.00 16 33 H -0.28 -0.18 7.11 99.48 0.71 0.52 16 34 H 0.22 -3.40 6.36 -2.91 -0.02 -3.42 16 35 H 0.44 -6.05 8.96 -92.71 -0.83 -6.88 16 36 H 0.16 -1.57 8.06 -2.91 -0.02 -1.60 16 37 H 0.16 -1.34 6.36 -2.91 -0.02 -1.36 16 38 H 0.41 -2.35 6.70 -92.70 -0.62 -2.98 16 39 H 0.11 -0.86 7.73 -2.39 -0.02 -0.88 16 40 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 41 H 0.15 0.00 8.06 -2.91 -0.02 -0.03 16 42 H 0.16 -1.01 8.06 -2.92 -0.02 -1.03 16 43 H 0.17 -1.63 6.64 -2.91 -0.02 -1.65 16 44 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 45 H 0.11 -0.60 6.30 -2.39 -0.02 -0.61 16 46 H 0.11 1.63 7.64 -2.91 -0.02 1.60 16 Total: 0.00 -30.16 393.96 1.05 -29.11 By element: Atomic # 1 Polarization: -21.28 SS G_CDS: -0.96 Total: -22.24 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 3.81 Total: 8.15 kcal Atomic # 7 Polarization: 3.48 SS G_CDS: -3.44 Total: 0.04 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -1.98 Total: -14.95 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 1.51 Total: 0.46 kcal Atomic # 14 Polarization: -2.67 SS G_CDS: 2.11 Total: -0.56 kcal Total: -30.16 1.05 -29.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_13287722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.797 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds