Wall clock time and date at job start Sun Mar 7 2021 00:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86298 * 109.47342 * 2 1 4 4 C 1.50706 * 109.46772 * 120.00089 * 2 1 3 5 5 C 1.38558 * 120.31824 * 245.00038 * 4 2 1 6 6 N 1.31523 * 120.90180 * 179.97438 * 5 4 2 7 7 C 1.32716 * 121.64153 * 359.97438 * 6 5 4 8 8 C 1.48169 * 119.72456 * 179.97438 * 7 6 5 9 9 O 1.21519 * 120.00173 * 179.97438 * 8 7 6 10 10 N 1.34781 * 120.00027 * 0.02562 * 8 7 6 11 11 C 1.46498 * 120.00034 * 179.97438 * 10 8 7 12 12 H 1.08998 * 112.84964 * 334.65901 * 11 10 8 13 13 C 1.53777 * 113.61644 * 105.86124 * 11 10 8 14 14 C 1.54043 * 86.98756 * 89.15975 * 13 11 10 15 15 H 1.09004 * 113.61438 * 270.88311 * 14 13 11 16 16 C 1.50702 * 113.69566 * 139.98997 * 14 13 11 17 17 C 1.38188 * 119.98767 * 322.46570 * 16 14 13 18 18 C 1.38226 * 120.04829 * 180.02562 * 17 16 14 19 19 C 1.38455 * 120.02761 * 359.97438 * 18 17 16 20 20 F 1.35099 * 120.01355 * 179.97438 * 19 18 17 21 21 C 1.38438 * 119.97297 * 0.02562 * 19 18 17 22 22 C 1.38400 * 119.95086 * 359.76780 * 21 19 18 23 23 F 1.35097 * 120.01453 * 180.22676 * 22 21 19 24 24 C 1.53782 * 87.07879 * 25.43279 * 14 13 11 25 25 C 1.39308 * 120.55746 * 0.02562 * 7 6 5 26 26 C 1.38599 * 119.05321 * 359.74792 * 25 7 6 27 27 H 0.96697 * 114.00254 * 300.00272 * 1 2 3 28 28 H 1.09003 * 109.47547 * 239.99589 * 2 1 3 29 29 H 1.48500 * 109.99906 * 299.99718 * 3 2 1 30 30 H 1.48504 * 110.00131 * 61.31350 * 3 2 1 31 31 H 1.07997 * 119.55148 * 359.97438 * 5 4 2 32 32 H 0.96996 * 119.99589 * 359.97438 * 10 8 7 33 33 H 1.09000 * 113.61460 * 203.66462 * 13 11 10 34 34 H 1.09003 * 113.61510 * 334.56154 * 13 11 10 35 35 H 1.07996 * 119.97127 * 359.97438 * 17 16 14 36 36 H 1.07999 * 119.98902 * 180.02562 * 18 17 16 37 37 H 1.08004 * 120.02561 * 179.97438 * 21 19 18 38 38 H 1.08996 * 113.61519 * 220.02602 * 24 14 13 39 39 H 1.08992 * 113.68985 * 89.13078 * 24 14 13 40 40 H 1.07997 * 120.47387 * 179.97438 * 25 7 6 41 41 H 1.08002 * 120.74983 * 180.27368 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7105 1.2305 5 6 2.6409 -0.0172 2.1978 6 7 3.0841 -0.6256 3.2763 7 6 2.8718 -1.9193 3.4828 8 6 3.3909 -2.5619 4.7128 9 8 3.1990 -3.7460 4.9072 10 7 4.0752 -1.8328 5.6166 11 6 4.5880 -2.4680 6.8331 12 1 4.0201 -3.3531 7.1201 13 6 6.1095 -2.6906 6.8174 14 6 6.2397 -1.2844 7.4328 15 1 6.3098 -0.4882 6.6917 16 6 7.2997 -1.1860 8.4995 17 6 7.4972 -2.2359 9.3760 18 6 8.4687 -2.1467 10.3551 19 6 9.2456 -1.0052 10.4584 20 9 10.1947 -0.9182 11.4159 21 6 9.0486 0.0472 9.5809 22 6 8.0784 -0.0449 8.5981 23 9 7.8882 0.9795 7.7382 24 6 4.8206 -1.4832 7.9911 25 6 2.1658 -2.6785 2.5523 26 6 1.6827 -2.0625 1.4085 27 1 -0.3933 0.4417 0.7650 28 1 1.7924 -0.5139 -0.8899 29 1 1.5616 2.4678 -1.2085 30 1 1.5878 2.4586 1.2242 31 1 2.8328 1.0372 2.0643 32 1 4.2280 -0.8876 5.4616 33 1 6.4407 -3.4898 7.4805 34 1 6.5288 -2.7704 5.8144 35 1 6.8914 -3.1264 9.2963 36 1 8.6226 -2.9680 11.0394 37 1 9.6538 0.9381 9.6609 38 1 4.2001 -0.5889 7.9350 39 1 4.7987 -1.9526 8.9745 40 1 1.9941 -3.7312 2.7215 41 1 1.1281 -2.6240 0.6712 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_13287726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:04 Heat of formation + Delta-G solvation = -56.646834 kcal Electronic energy + Delta-G solvation = -28685.528644 eV Core-core repulsion = 24169.179017 eV Total energy + Delta-G solvation = -4516.349627 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.112 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -50.06459 -50.03549 -42.00689 -41.22356 -40.04452 -38.70060 -37.99162 -34.83533 -33.65829 -32.98083 -31.87432 -31.41225 -27.99597 -26.73335 -26.14374 -25.05333 -24.40600 -23.85548 -22.83775 -22.04334 -20.29119 -19.49195 -19.16999 -18.70303 -18.21076 -17.80002 -17.29285 -17.04260 -16.83779 -16.62229 -16.57563 -16.45225 -16.36237 -16.15014 -16.09055 -15.53230 -15.40688 -15.23141 -14.86850 -14.52239 -14.39728 -14.27831 -13.95965 -13.74179 -13.56086 -13.48190 -13.42796 -12.84053 -12.63522 -12.55453 -12.15787 -12.05646 -11.75080 -11.46408 -11.31223 -11.08126 -10.69501 -10.66954 -10.40308 -10.12922 -10.05852 -9.58975 -4.92627 -0.60941 -0.11841 -0.02374 0.07537 1.24021 1.51620 1.58570 1.90995 1.96331 2.28999 2.64621 2.83221 2.92656 3.29884 3.33577 3.45054 3.49275 3.49870 3.61895 3.66923 3.69013 3.77699 3.86826 3.92391 3.93749 4.08586 4.12621 4.18213 4.47451 4.57969 4.60197 4.69496 4.74046 4.80326 4.84444 4.89088 4.91612 4.92228 4.99096 5.00796 5.08546 5.11203 5.26068 5.37767 5.54107 5.73544 6.25523 6.41930 6.59992 7.02119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.077 4.077 3 Si 0.764 3.236 4 C -0.139 4.139 5 C 0.099 3.901 6 N -0.461 5.461 7 C 0.063 3.937 8 C 0.573 3.427 9 O -0.563 6.563 10 N -0.685 5.685 11 C 0.111 3.889 12 H 0.100 0.900 13 C -0.136 4.136 14 C -0.073 4.073 15 H 0.099 0.901 16 C -0.111 4.111 17 C -0.055 4.055 18 C -0.154 4.154 19 C 0.107 3.893 20 F -0.142 7.142 21 C -0.198 4.198 22 C 0.115 3.885 23 F -0.138 7.138 24 C -0.122 4.122 25 C -0.115 4.115 26 C -0.052 4.052 27 H 0.388 0.612 28 H 0.137 0.863 29 H -0.300 1.300 30 H -0.274 1.274 31 H 0.184 0.816 32 H 0.418 0.582 33 H 0.115 0.885 34 H 0.067 0.933 35 H 0.173 0.827 36 H 0.163 0.837 37 H 0.150 0.850 38 H 0.082 0.918 39 H 0.117 0.883 40 H 0.150 0.850 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.213 0.633 -0.803 1.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.187 4.187 3 Si 0.668 3.332 4 C -0.141 4.141 5 C -0.061 4.061 6 N -0.172 5.172 7 C -0.074 4.074 8 C 0.358 3.642 9 O -0.441 6.441 10 N -0.335 5.335 11 C 0.006 3.994 12 H 0.118 0.882 13 C -0.174 4.174 14 C -0.091 4.091 15 H 0.117 0.883 16 C -0.112 4.112 17 C -0.072 4.072 18 C -0.173 4.173 19 C 0.088 3.912 20 F -0.121 7.121 21 C -0.218 4.218 22 C 0.096 3.904 23 F -0.116 7.116 24 C -0.160 4.160 25 C -0.136 4.136 26 C -0.078 4.078 27 H 0.238 0.762 28 H 0.155 0.845 29 H -0.228 1.228 30 H -0.200 1.200 31 H 0.200 0.800 32 H 0.256 0.744 33 H 0.133 0.867 34 H 0.086 0.914 35 H 0.190 0.810 36 H 0.181 0.819 37 H 0.168 0.832 38 H 0.101 0.899 39 H 0.136 0.864 40 H 0.168 0.832 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.475 0.805 -0.513 1.066 hybrid contribution -1.107 0.286 -0.199 1.161 sum -0.632 1.092 -0.712 1.449 Atomic orbital electron populations 1.86617 1.17940 1.80347 1.50263 1.25193 0.83717 1.11916 0.97842 0.94071 0.90153 0.71793 0.77143 1.21666 0.98781 0.95540 0.98157 1.23035 0.93773 1.00888 0.88385 1.67515 1.18612 1.09071 1.21995 1.21096 0.99630 0.90857 0.95834 1.18055 0.77738 0.85618 0.82772 1.90791 1.59598 1.16175 1.77517 1.45510 1.53994 1.13983 1.20056 1.21991 0.95271 0.97568 0.84574 0.88201 1.23631 0.95129 0.96517 1.02129 1.21574 0.92743 0.99290 0.95490 0.88272 1.19960 0.98385 0.93207 0.99670 1.21074 0.96127 0.98503 0.91529 1.21521 0.96647 0.97679 1.01436 1.17567 0.89568 0.95739 0.88343 1.91524 1.62316 1.96608 1.61641 1.21163 1.01909 1.01409 0.97313 1.17332 0.97180 0.85884 0.90012 1.91502 1.94360 1.57646 1.68126 1.23416 0.94303 0.99793 0.98487 1.22297 0.95548 1.02325 0.93414 1.21753 0.95476 0.94101 0.96451 0.76230 0.84512 1.22766 1.20042 0.79952 0.74398 0.86703 0.91419 0.80955 0.81947 0.83178 0.89946 0.86446 0.83203 0.82046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.07 12.84 -148.98 -1.91 -0.84 16 2 C -0.08 0.42 2.82 71.24 0.20 0.62 16 3 Si 0.76 -4.70 29.91 68.60 2.05 -2.65 16 4 C -0.14 0.52 5.37 -19.70 -0.11 0.41 16 5 C 0.10 -0.28 9.84 84.82 0.83 0.55 16 6 N -0.46 -0.46 9.54 -184.92 -1.76 -2.23 16 7 C 0.06 0.21 6.75 41.91 0.28 0.49 16 8 C 0.57 3.15 7.81 86.88 0.68 3.83 16 9 O -0.56 -6.49 15.94 -3.78 -0.06 -6.55 16 10 N -0.69 -0.19 5.25 -442.59 -2.33 -2.52 16 11 C 0.11 -0.26 4.30 45.52 0.20 -0.07 16 12 H 0.10 0.00 7.50 -2.39 -0.02 -0.02 16 13 C -0.14 0.57 7.27 31.21 0.23 0.79 16 14 C -0.07 0.30 3.79 -10.92 -0.04 0.26 16 15 H 0.10 -0.26 7.44 -2.38 -0.02 -0.28 16 16 C -0.11 0.26 5.30 -19.81 -0.10 0.16 16 17 C -0.05 0.30 8.61 22.25 0.19 0.49 16 18 C -0.15 0.50 10.02 22.32 0.22 0.72 16 19 C 0.11 0.15 7.30 22.37 0.16 0.31 16 20 F -0.14 -0.63 17.27 44.97 0.78 0.14 16 21 C -0.20 -0.33 10.01 22.36 0.22 -0.11 16 22 C 0.12 0.17 7.24 22.37 0.16 0.33 16 23 F -0.14 -0.52 16.36 44.97 0.74 0.22 16 24 C -0.12 0.73 7.29 31.12 0.23 0.95 16 25 C -0.11 -0.16 9.63 22.61 0.22 0.06 16 26 C -0.05 0.12 9.83 22.45 0.22 0.34 16 27 H 0.39 -2.84 8.70 -74.06 -0.64 -3.48 16 28 H 0.14 -1.05 7.96 -2.39 -0.02 -1.07 16 29 H -0.30 -0.66 7.11 99.48 0.71 0.04 16 30 H -0.27 0.79 7.01 99.48 0.70 1.48 16 31 H 0.18 -1.38 4.86 -2.91 -0.01 -1.39 16 32 H 0.42 -0.86 8.03 -92.71 -0.74 -1.61 16 33 H 0.11 -0.87 6.33 -2.39 -0.02 -0.88 16 34 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 35 H 0.17 -1.93 6.66 -2.91 -0.02 -1.94 16 36 H 0.16 -1.17 8.06 -2.91 -0.02 -1.20 16 37 H 0.15 0.03 8.06 -2.91 -0.02 0.01 16 38 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 39 H 0.12 -1.02 7.73 -2.39 -0.02 -1.04 16 40 H 0.15 0.20 7.64 -2.91 -0.02 0.18 16 41 H 0.16 -0.88 8.06 -2.91 -0.02 -0.90 16 Total: 0.00 -18.02 357.71 1.06 -16.96 By element: Atomic # 1 Polarization: -12.47 SS G_CDS: -0.24 Total: -12.70 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 3.80 Total: 10.16 kcal Atomic # 7 Polarization: -0.66 SS G_CDS: -4.09 Total: -4.75 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -1.97 Total: -7.39 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 1.51 Total: 0.36 kcal Atomic # 14 Polarization: -4.70 SS G_CDS: 2.05 Total: -2.65 kcal Total: -18.02 1.06 -16.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_13287726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.686 kcal (2) G-P(sol) polarization free energy of solvation -18.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds