Wall clock time and date at job start Sun Mar 7 2021 00:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34658 * 124.85331 * 2 1 4 4 C 1.36764 * 108.39895 * 179.97438 * 3 2 1 5 5 C 1.47270 * 126.94056 * 180.02562 * 4 3 2 6 6 O 1.21625 * 119.99914 * 180.02562 * 5 4 3 7 7 N 1.34780 * 119.99914 * 0.02562 * 5 4 3 8 8 C 1.46503 * 119.99537 * 179.97438 * 7 5 4 9 9 H 1.08996 * 112.90851 * 336.24795 * 8 7 5 10 10 C 1.53784 * 113.61173 * 107.50315 * 8 7 5 11 11 C 1.53785 * 87.07993 * 89.11444 * 10 8 7 12 12 H 1.09003 * 113.68512 * 270.87147 * 11 10 8 13 13 C 1.50697 * 113.61554 * 139.98123 * 11 10 8 14 14 C 1.38446 * 119.98865 * 142.49672 * 13 11 10 15 15 F 1.35105 * 120.01452 * 0.02562 * 14 13 11 16 16 C 1.38445 * 119.97568 * 180.02562 * 14 13 11 17 17 C 1.38396 * 119.94984 * 359.97438 * 16 14 13 18 18 F 1.35092 * 120.01557 * 179.97438 * 17 16 14 19 19 C 1.38502 * 119.97368 * 359.97438 * 17 16 14 20 20 C 1.38183 * 120.02423 * 0.04419 * 19 17 16 21 21 C 1.53777 * 87.08223 * 25.42904 * 11 10 8 22 22 C 1.46680 * 106.11707 * 0.26234 * 4 3 2 23 23 C 1.34483 * 106.33236 * 359.56703 * 22 4 3 24 24 C 1.50708 * 125.57307 * 180.14239 * 23 22 4 25 25 O 1.42903 * 109.46919 * 150.33949 * 24 23 22 26 26 Si 1.86299 * 109.46871 * 30.34347 * 24 23 22 27 27 H 1.09003 * 109.47229 * 90.02020 * 1 2 3 28 28 H 1.09002 * 109.46804 * 210.02098 * 1 2 3 29 29 H 1.08998 * 109.47090 * 330.02236 * 1 2 3 30 30 H 1.08000 * 125.79784 * 0.02562 * 3 2 1 31 31 H 0.96998 * 119.99989 * 359.97438 * 7 5 4 32 32 H 1.08998 * 113.61276 * 334.56561 * 10 8 7 33 33 H 1.09001 * 113.61231 * 203.66178 * 10 8 7 34 34 H 1.07997 * 120.02404 * 179.73166 * 16 14 13 35 35 H 1.07991 * 119.98797 * 180.02562 * 19 17 16 36 36 H 1.08006 * 119.97672 * 179.97438 * 20 19 17 37 37 H 1.08999 * 113.61212 * 89.11718 * 21 11 10 38 38 H 1.09000 * 113.61635 * 219.93688 * 21 11 10 39 39 H 1.07999 * 126.83518 * 179.73685 * 22 4 3 40 40 H 1.08998 * 109.46839 * 270.34077 * 24 23 22 41 41 H 0.96696 * 113.99856 * 180.02562 * 25 24 23 42 42 H 1.48500 * 110.00179 * 59.99884 * 26 24 23 43 43 H 1.48504 * 109.99498 * 181.31687 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2345 1.1050 0.0000 4 6 3.5462 0.7176 0.0006 5 6 4.7284 1.5958 0.0013 6 8 5.8447 1.1129 0.0013 7 7 4.5734 2.9347 0.0020 8 6 5.7495 3.8082 0.0033 9 1 6.6377 3.3232 0.4080 10 6 5.9922 4.5164 -1.3400 11 6 5.0871 5.6452 -0.8187 12 1 4.0307 5.4987 -1.0439 13 6 5.5760 7.0250 -1.1766 14 6 4.6683 8.0160 -1.5093 15 9 3.3444 7.7465 -1.5126 16 6 5.1177 9.2834 -1.8387 17 6 6.4741 9.5583 -1.8344 18 9 6.9142 10.7944 -2.1560 19 6 7.3803 8.5656 -1.5002 20 6 6.9305 7.3008 -1.1720 21 6 5.4821 5.2003 0.5994 22 6 3.5375 -0.7491 -0.0055 23 6 2.2448 -1.1197 0.0006 24 6 1.7398 -2.5397 0.0007 25 8 0.4806 -2.5974 0.6739 26 14 2.9646 -3.6342 0.8797 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 1.8767 2.1240 0.0004 31 1 3.6831 3.3198 0.0016 32 1 5.5771 3.9839 -2.1956 33 1 7.0275 4.8218 -1.4918 34 1 4.4106 10.0559 -2.1025 35 1 8.4387 8.7799 -1.4964 36 1 7.6378 6.5272 -0.9120 37 1 6.3779 5.6926 0.9778 38 1 4.6555 5.2212 1.3096 39 1 4.3981 -1.4016 -0.0107 40 1 1.6185 -2.8822 -1.0270 41 1 0.0955 -3.4835 0.7124 42 1 3.1389 -3.1776 2.2819 43 1 2.4935 -5.0424 0.8589 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_13287730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:08 Heat of formation + Delta-G solvation = -43.637070 kcal Electronic energy + Delta-G solvation = -29437.156450 eV Core-core repulsion = 24894.059490 eV Total energy + Delta-G solvation = -4543.096960 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.128 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.06106 -50.03448 -42.41619 -41.34827 -39.92902 -38.54957 -37.86472 -34.55523 -33.66948 -31.98686 -31.71896 -31.05426 -27.67997 -26.67727 -26.49844 -25.82077 -24.35861 -23.72317 -22.73191 -21.10306 -20.47551 -20.14745 -19.31397 -18.56686 -18.47293 -18.17265 -17.46177 -17.03830 -16.85027 -16.74550 -16.58835 -16.53263 -16.36151 -15.91766 -15.58273 -15.52873 -15.47439 -15.18096 -15.05557 -14.63577 -14.42914 -13.98363 -13.88931 -13.72556 -13.56693 -13.40956 -13.28725 -13.20746 -13.05235 -12.79138 -12.53952 -12.52548 -12.08281 -12.00619 -11.68028 -11.26795 -11.00917 -10.80098 -10.11742 -10.04045 -9.58775 -9.53777 -9.15186 -4.88630 -0.11168 -0.01968 0.74715 1.02516 1.49233 1.58504 1.88762 2.06412 2.27042 2.29708 2.56510 2.83473 3.08631 3.32885 3.47436 3.51546 3.66218 3.69106 3.72373 3.89253 3.92455 3.96400 3.98585 4.10571 4.20257 4.30740 4.39742 4.47073 4.48333 4.65764 4.72689 4.77445 4.80647 4.85874 4.90499 4.93192 4.95268 5.00125 5.04682 5.04935 5.10919 5.18665 5.31641 5.64476 5.71703 5.74234 6.01449 6.23926 6.51537 6.65382 7.36467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.427 5.427 3 C 0.065 3.935 4 C -0.259 4.259 5 C 0.593 3.407 6 O -0.588 6.588 7 N -0.702 5.702 8 C 0.116 3.884 9 H 0.091 0.909 10 C -0.138 4.138 11 C -0.070 4.070 12 H 0.103 0.897 13 C -0.111 4.111 14 C 0.116 3.884 15 F -0.137 7.137 16 C -0.198 4.198 17 C 0.107 3.893 18 F -0.142 7.142 19 C -0.155 4.155 20 C -0.056 4.056 21 C -0.123 4.123 22 C -0.159 4.159 23 C 0.013 3.987 24 C -0.046 4.046 25 O -0.552 6.552 26 Si 0.767 3.233 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.205 0.795 31 H 0.411 0.589 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.151 0.849 35 H 0.162 0.838 36 H 0.171 0.829 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.158 0.842 40 H 0.102 0.898 41 H 0.400 0.600 42 H -0.311 1.311 43 H -0.271 1.271 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.673 -0.998 -1.012 3.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.101 5.101 3 C -0.072 4.072 4 C -0.269 4.269 5 C 0.383 3.617 6 O -0.469 6.469 7 N -0.353 5.353 8 C 0.011 3.989 9 H 0.110 0.890 10 C -0.176 4.176 11 C -0.089 4.089 12 H 0.121 0.879 13 C -0.112 4.112 14 C 0.097 3.903 15 F -0.116 7.116 16 C -0.218 4.218 17 C 0.087 3.913 18 F -0.121 7.121 19 C -0.173 4.173 20 C -0.074 4.074 21 C -0.161 4.161 22 C -0.183 4.183 23 C -0.096 4.096 24 C -0.155 4.155 25 O -0.364 6.364 26 Si 0.671 3.329 27 H 0.101 0.899 28 H 0.127 0.873 29 H 0.117 0.883 30 H 0.222 0.778 31 H 0.248 0.752 32 H 0.086 0.914 33 H 0.127 0.873 34 H 0.168 0.832 35 H 0.180 0.820 36 H 0.189 0.811 37 H 0.130 0.870 38 H 0.103 0.897 39 H 0.175 0.825 40 H 0.120 0.880 41 H 0.252 0.748 42 H -0.239 1.239 43 H -0.197 1.197 Dipole moment (debyes) X Y Z Total from point charges -3.081 -1.266 -0.312 3.345 hybrid contribution -1.822 0.367 -0.014 1.859 sum -4.903 -0.899 -0.325 4.995 Atomic orbital electron populations 1.22639 0.74803 1.06625 1.04614 1.43726 1.08120 1.04787 1.53442 1.22398 0.89276 0.93133 1.02443 1.20295 0.92147 0.93874 1.20582 1.17582 0.87699 0.82032 0.74350 1.90746 1.27463 1.76052 1.52644 1.45383 1.09927 1.04713 1.75257 1.21833 0.89390 0.90206 0.97500 0.89044 1.23590 1.01194 0.95428 0.97434 1.21529 1.00609 0.89032 0.97687 0.87866 1.19984 0.93496 0.95540 1.02165 1.17300 0.77776 0.93465 1.01794 1.91499 1.31745 1.94231 1.94089 1.21162 0.95824 0.97854 1.06961 1.17565 0.92141 0.80731 1.00832 1.91521 1.89976 1.40331 1.90281 1.21517 1.01327 0.92593 1.01896 1.21078 0.94345 0.96389 0.95539 1.23417 1.03822 0.93526 0.95320 1.21752 0.95237 0.93674 1.07630 1.19930 0.90183 0.88107 1.11402 1.24414 0.92591 0.95938 1.02588 1.86382 1.33930 1.36296 1.79759 0.93475 0.85603 0.74554 0.79227 0.89909 0.87343 0.88262 0.77847 0.75249 0.91410 0.87256 0.83164 0.82046 0.81147 0.87016 0.89733 0.82468 0.87984 0.74793 1.23882 1.19690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.27 10.71 127.77 1.37 1.09 16 2 N -0.43 -0.14 3.09 -533.23 -1.65 -1.78 16 3 C 0.06 -0.05 10.83 83.91 0.91 0.85 16 4 C -0.26 -1.37 6.29 -19.04 -0.12 -1.49 16 5 C 0.59 4.50 7.81 86.62 0.68 5.18 16 6 O -0.59 -9.47 16.57 -4.11 -0.07 -9.54 16 7 N -0.70 0.21 5.25 -443.44 -2.33 -2.12 16 8 C 0.12 -0.17 4.32 45.52 0.20 0.02 16 9 H 0.09 0.23 7.46 -2.39 -0.02 0.22 16 10 C -0.14 0.49 7.25 31.12 0.23 0.71 16 11 C -0.07 0.32 3.78 -11.01 -0.04 0.28 16 12 H 0.10 -0.46 7.44 -2.39 -0.02 -0.48 16 13 C -0.11 0.26 5.29 -19.82 -0.10 0.16 16 14 C 0.12 0.13 7.24 22.37 0.16 0.29 16 15 F -0.14 -0.39 16.36 44.97 0.74 0.35 16 16 C -0.20 -0.31 10.01 22.36 0.22 -0.09 16 17 C 0.11 0.17 7.30 22.37 0.16 0.33 16 18 F -0.14 -0.66 17.27 44.97 0.78 0.11 16 19 C -0.15 0.43 10.03 22.32 0.22 0.65 16 20 C -0.06 0.27 8.60 22.26 0.19 0.46 16 21 C -0.12 0.71 7.29 31.12 0.23 0.94 16 22 C -0.16 -0.92 9.50 23.62 0.22 -0.69 16 23 C 0.01 0.04 6.16 40.98 0.25 0.29 16 24 C -0.05 0.10 2.97 71.24 0.21 0.31 16 25 O -0.55 1.68 9.69 -148.98 -1.44 0.23 16 26 Si 0.77 -0.72 31.13 68.60 2.14 1.42 16 27 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 28 H 0.11 -0.38 5.13 -2.39 -0.01 -0.40 16 29 H 0.10 -0.89 8.13 -2.39 -0.02 -0.91 16 30 H 0.20 -1.90 7.45 -2.91 -0.02 -1.92 16 31 H 0.41 -2.53 7.64 -92.71 -0.71 -3.23 16 32 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H 0.11 -0.67 6.31 -2.39 -0.02 -0.69 16 34 H 0.15 0.01 8.06 -2.91 -0.02 -0.01 16 35 H 0.16 -1.07 8.06 -2.91 -0.02 -1.09 16 36 H 0.17 -1.72 6.66 -2.91 -0.02 -1.74 16 37 H 0.11 -0.87 7.72 -2.39 -0.02 -0.88 16 38 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 39 H 0.16 0.67 6.91 -2.91 -0.02 0.65 16 40 H 0.10 -0.63 7.96 -2.39 -0.02 -0.65 16 41 H 0.40 -4.30 8.74 -74.06 -0.65 -4.94 16 42 H -0.31 -2.79 7.11 99.48 0.71 -2.08 16 43 H -0.27 -0.31 7.11 99.48 0.71 0.40 16 Total: 0.00 -23.95 367.06 2.92 -21.03 By element: Atomic # 1 Polarization: -18.78 SS G_CDS: -0.23 Total: -19.00 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 4.99 Total: 9.31 kcal Atomic # 7 Polarization: 0.07 SS G_CDS: -3.97 Total: -3.90 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -1.51 Total: -9.31 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 1.51 Total: 0.46 kcal Atomic # 14 Polarization: -0.72 SS G_CDS: 2.14 Total: 1.42 kcal Total: -23.95 2.92 -21.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_13287730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.610 kcal (2) G-P(sol) polarization free energy of solvation -23.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds