Wall clock time and date at job start Sun Mar 7 2021 00:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86299 * 109.46621 * 2 1 4 4 C 1.50699 * 109.47178 * 119.99703 * 2 1 3 5 5 C 1.34844 * 125.89945 * 218.23244 * 4 2 1 6 6 C 1.40947 * 107.47044 * 179.97438 * 5 4 2 7 7 C 1.34849 * 107.46537 * 359.75630 * 6 5 4 8 8 N 1.36573 * 108.20148 * 0.38891 * 7 6 5 9 9 C 1.40200 * 125.67032 * 179.86701 * 8 7 6 10 10 C 1.38821 * 120.06298 * 56.07279 * 9 8 7 11 11 C 1.38121 * 119.93163 * 180.02562 * 10 9 8 12 12 C 1.38284 * 120.06587 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.93242 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46766 * 90.00563 * 13 12 11 15 15 O 1.21285 * 120.00209 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99830 * 179.97438 * 14 13 12 17 17 C 1.46503 * 119.99870 * 180.02562 * 16 14 13 18 18 H 1.09001 * 112.85200 * 23.80212 * 17 16 14 19 19 C 1.53778 * 113.61603 * 155.00123 * 17 16 14 20 20 C 1.53785 * 87.07839 * 89.20039 * 19 17 16 21 21 H 1.09001 * 113.61377 * 270.79554 * 20 19 17 22 22 C 1.50701 * 113.61213 * 139.98844 * 20 19 17 23 23 C 1.38449 * 119.99299 * 119.99971 * 22 20 19 24 24 F 1.35100 * 120.00875 * 359.73964 * 23 22 20 25 25 C 1.38442 * 119.97563 * 180.02562 * 23 22 20 26 26 C 1.38395 * 119.94876 * 0.02562 * 25 23 22 27 27 F 1.35101 * 120.00904 * 179.97438 * 26 25 23 28 28 C 1.38495 * 119.97927 * 359.97438 * 26 25 23 29 29 C 1.38190 * 120.01901 * 0.02562 * 28 26 25 30 30 C 1.53772 * 87.08338 * 25.43273 * 20 19 17 31 31 C 1.38274 * 120.12927 * 0.28288 * 12 11 10 32 32 C 1.38125 * 120.06781 * 359.48410 * 31 12 11 33 33 H 0.96696 * 114.00309 * 305.22577 * 1 2 3 34 34 H 1.08997 * 109.47090 * 240.00124 * 2 1 3 35 35 H 1.48498 * 109.99770 * 178.68267 * 3 2 1 36 36 H 1.48503 * 109.99866 * 299.99515 * 3 2 1 37 37 H 1.08006 * 126.26562 * 359.94196 * 5 4 2 38 38 H 1.08001 * 126.26856 * 179.97438 * 6 5 4 39 39 H 1.08002 * 125.89914 * 180.22918 * 7 6 5 40 40 H 1.07992 * 120.03573 * 0.02562 * 10 9 8 41 41 H 1.08005 * 119.97049 * 180.02562 * 11 10 9 42 42 H 1.09003 * 109.47665 * 330.00517 * 13 12 11 43 43 H 1.08999 * 109.46907 * 210.00314 * 13 12 11 44 44 H 0.96995 * 120.00392 * 0.02562 * 16 14 13 45 45 H 1.08998 * 113.61231 * 334.65598 * 19 17 16 46 46 H 1.09000 * 113.61440 * 203.74656 * 19 17 16 47 47 H 1.08001 * 120.02288 * 179.97438 * 25 23 22 48 48 H 1.07994 * 119.99352 * 180.02562 * 28 26 25 49 49 H 1.08001 * 119.97113 * 179.97438 * 29 28 26 50 50 H 1.09003 * 113.61299 * 89.11686 * 30 20 19 51 51 H 1.08993 * 113.61584 * 220.01445 * 30 20 19 52 52 H 1.08000 * 119.96341 * 179.74303 * 31 12 11 53 53 H 1.07996 * 120.03147 * 180.26274 * 32 31 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 3.0039 -0.3546 1.9663 6 6 3.1193 -1.2817 3.0217 7 6 2.1098 -2.1668 2.8951 8 7 1.3787 -1.8252 1.7933 9 6 0.2455 -2.5029 1.3219 10 6 -0.8454 -2.6989 2.1577 11 6 -1.9602 -3.3674 1.6905 12 6 -1.9905 -3.8407 0.3916 13 6 -3.2081 -4.5701 -0.1148 14 6 -4.1707 -3.5809 -0.7197 15 8 -3.8954 -2.3999 -0.7375 16 7 -5.3376 -4.0087 -1.2411 17 6 -6.2732 -3.0472 -1.8296 18 1 -5.7850 -2.1315 -2.1633 19 6 -7.2102 -3.6641 -2.8814 20 6 -8.1758 -3.9735 -1.7251 21 1 -8.0018 -4.9431 -1.2585 22 6 -9.6244 -3.7416 -2.0698 23 6 -10.5275 -4.7890 -2.0048 24 9 -10.1092 -6.0200 -1.6375 25 6 -11.8581 -4.5757 -2.3221 26 6 -12.2837 -3.3155 -2.7044 27 9 -13.5818 -3.1061 -3.0148 28 6 -11.3786 -2.2693 -2.7688 29 6 -10.0507 -2.4834 -2.4518 30 6 -7.5260 -2.8003 -0.9727 31 6 -0.9032 -3.6515 -0.4416 32 6 0.2125 -2.9796 0.0184 33 1 -0.3933 0.5095 0.7216 34 1 1.7924 -0.5138 -0.8900 35 1 3.5345 1.7704 0.0321 36 1 1.5614 2.4678 -1.2086 37 1 3.6556 0.4865 1.7807 38 1 3.8755 -1.2811 3.7928 39 1 1.9149 -3.0030 3.5502 40 1 -0.8226 -2.3292 3.1721 41 1 -2.8095 -3.5199 2.3401 42 1 -3.6919 -5.0881 0.7133 43 1 -2.9086 -5.2951 -0.8716 44 1 -5.5580 -4.9532 -1.2266 45 1 -6.8030 -4.5545 -3.3602 46 1 -7.6021 -2.9398 -3.5955 47 1 -12.5631 -5.3923 -2.2721 48 1 -11.7106 -1.2857 -3.0667 49 1 -9.3455 -1.6670 -2.5026 50 1 -8.0043 -1.8398 -1.1650 51 1 -7.3738 -2.9932 0.0891 52 1 -0.9281 -4.0259 -1.4543 53 1 1.0597 -2.8285 -0.6341 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_13287746.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:17 Heat of formation + Delta-G solvation = -8.817171 kcal Electronic energy + Delta-G solvation = -39155.692051 eV Core-core repulsion = 33790.125196 eV Total energy + Delta-G solvation = -5365.566855 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 425.159 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -50.07743 -50.05060 -42.68050 -41.57089 -40.55747 -39.62866 -38.59272 -37.70836 -34.84832 -34.50876 -32.15291 -32.07409 -31.79977 -31.23742 -31.03179 -27.94957 -26.70988 -26.08832 -26.01695 -24.32469 -23.95405 -23.53310 -22.77538 -21.65333 -21.43937 -20.61537 -20.22412 -19.34343 -19.24986 -18.36426 -18.08840 -17.48995 -17.26513 -17.07531 -17.04235 -16.98006 -16.73475 -16.38604 -16.34130 -16.15110 -15.80410 -15.76467 -15.52337 -15.38928 -15.25128 -15.21589 -14.76753 -14.56934 -14.48901 -14.39577 -14.21862 -14.03051 -13.90033 -13.77472 -13.57273 -13.45696 -13.35960 -13.23385 -13.00991 -12.75997 -12.60823 -12.56050 -12.17710 -12.03626 -12.02790 -11.94665 -11.70384 -11.30115 -10.98761 -10.74567 -10.23215 -10.12975 -10.02688 -9.98229 -9.59932 -9.22860 -9.08907 -4.98970 -0.13243 -0.04106 0.02262 0.35808 1.07055 1.32718 1.62365 1.65430 1.84243 1.97186 2.09227 2.14713 2.27523 2.72687 2.81683 3.30702 3.38550 3.45305 3.49312 3.62847 3.65938 3.67747 3.68659 3.76821 3.87410 3.89330 3.93947 4.02647 4.08359 4.14559 4.18037 4.24783 4.33275 4.39253 4.49673 4.52865 4.61736 4.62939 4.64584 4.70645 4.74696 4.82637 4.83865 4.87304 4.91014 4.93960 4.97221 5.01783 5.07910 5.13838 5.20004 5.22099 5.23776 5.29259 5.36389 5.51116 5.63774 5.72066 5.80448 5.93240 6.17742 6.50686 6.57167 6.60716 7.29822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.056 4.056 3 Si 0.805 3.195 4 C -0.020 4.020 5 C -0.203 4.203 6 C -0.200 4.200 7 C -0.014 4.014 8 N -0.395 5.395 9 C 0.119 3.881 10 C -0.119 4.119 11 C -0.094 4.094 12 C -0.066 4.066 13 C -0.099 4.099 14 C 0.515 3.485 15 O -0.572 6.572 16 N -0.705 5.705 17 C 0.117 3.883 18 H 0.087 0.913 19 C -0.125 4.125 20 C -0.070 4.070 21 H 0.105 0.895 22 C -0.112 4.112 23 C 0.117 3.883 24 F -0.137 7.137 25 C -0.198 4.198 26 C 0.107 3.893 27 F -0.143 7.143 28 C -0.155 4.155 29 C -0.057 4.057 30 C -0.138 4.138 31 C -0.099 4.099 32 C -0.110 4.110 33 H 0.387 0.613 34 H 0.099 0.901 35 H -0.277 1.277 36 H -0.292 1.292 37 H 0.150 0.850 38 H 0.156 0.844 39 H 0.180 0.820 40 H 0.136 0.864 41 H 0.147 0.853 42 H 0.134 0.866 43 H 0.130 0.870 44 H 0.416 0.584 45 H 0.085 0.915 46 H 0.107 0.893 47 H 0.151 0.849 48 H 0.161 0.839 49 H 0.170 0.830 50 H 0.105 0.895 51 H 0.070 0.930 52 H 0.136 0.864 53 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.877 -2.130 1.667 3.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.165 4.165 3 Si 0.708 3.292 4 C -0.130 4.130 5 C -0.228 4.228 6 C -0.224 4.224 7 C -0.142 4.142 8 N -0.068 5.068 9 C 0.030 3.970 10 C -0.138 4.138 11 C -0.113 4.113 12 C -0.067 4.067 13 C -0.138 4.138 14 C 0.303 3.697 15 O -0.451 6.451 16 N -0.357 5.357 17 C 0.011 3.989 18 H 0.105 0.895 19 C -0.163 4.163 20 C -0.089 4.089 21 H 0.124 0.876 22 C -0.113 4.113 23 C 0.097 3.903 24 F -0.115 7.115 25 C -0.218 4.218 26 C 0.087 3.913 27 F -0.121 7.121 28 C -0.174 4.174 29 C -0.074 4.074 30 C -0.176 4.176 31 C -0.117 4.117 32 C -0.130 4.130 33 H 0.235 0.765 34 H 0.116 0.884 35 H -0.203 1.203 36 H -0.220 1.220 37 H 0.168 0.832 38 H 0.173 0.827 39 H 0.197 0.803 40 H 0.154 0.846 41 H 0.165 0.835 42 H 0.152 0.848 43 H 0.148 0.852 44 H 0.253 0.747 45 H 0.104 0.896 46 H 0.126 0.874 47 H 0.168 0.832 48 H 0.179 0.821 49 H 0.187 0.813 50 H 0.123 0.877 51 H 0.089 0.911 52 H 0.154 0.846 53 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.419 -1.289 0.602 2.009 hybrid contribution -0.286 -1.357 -0.243 1.408 sum -1.705 -2.647 0.358 3.169 Atomic orbital electron populations 1.86537 1.17158 1.76727 1.54966 1.25018 0.85319 1.11510 0.94699 0.93026 0.77984 0.73908 0.84265 1.21222 0.99108 0.92146 1.00532 1.20980 0.99752 1.03656 0.98393 1.21182 1.01503 0.97661 1.02057 1.22363 0.95508 1.03692 0.92609 1.41564 1.21466 1.21313 1.22487 1.17718 0.86967 0.98058 0.94307 1.21147 0.91996 1.00379 1.00302 1.21108 0.97711 0.96774 0.95697 1.19562 0.94757 0.98507 0.93836 1.20768 0.92035 0.96987 1.04026 1.20961 0.82051 0.89401 0.77271 1.90771 1.76633 1.19701 1.57970 1.45620 1.18179 1.11546 1.60370 1.21786 0.89053 0.93394 0.94682 0.89459 1.23414 0.94535 1.02416 0.95898 1.21542 0.88259 1.00550 0.98502 0.87642 1.19994 0.96069 0.92834 1.02360 1.17295 0.92070 0.80530 1.00376 1.91502 1.90482 1.40475 1.89042 1.21171 0.96276 0.98278 1.06075 1.17568 0.78790 0.94227 1.00677 1.91525 1.34558 1.95506 1.90528 1.21514 0.93314 0.99726 1.02849 1.21064 0.95100 0.96486 0.94766 1.23568 0.95555 0.98826 0.99681 1.21019 0.92470 0.98265 0.99961 1.20931 0.99247 0.98227 0.94561 0.76463 0.88360 1.20323 1.21964 0.83208 0.82682 0.80261 0.84601 0.83538 0.84762 0.85217 0.74676 0.89620 0.87421 0.83152 0.82122 0.81275 0.87656 0.91139 0.84586 0.87080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.28 11.01 -148.98 -1.64 -4.92 16 2 C -0.06 -0.25 2.49 71.24 0.18 -0.07 16 3 Si 0.81 0.64 30.94 68.60 2.12 2.76 16 4 C -0.02 -0.12 6.12 41.04 0.25 0.13 16 5 C -0.20 -1.04 9.39 22.15 0.21 -0.83 16 6 C -0.20 -0.85 10.86 22.15 0.24 -0.61 16 7 C -0.01 -0.06 11.21 83.18 0.93 0.87 16 8 N -0.40 -2.44 2.84 -333.41 -0.95 -3.39 16 9 C 0.12 0.68 4.66 38.08 0.18 0.86 16 10 C -0.12 -0.34 9.77 22.38 0.22 -0.12 16 11 C -0.09 -0.06 9.69 22.25 0.22 0.16 16 12 C -0.07 -0.03 4.37 -19.85 -0.09 -0.12 16 13 C -0.10 0.61 5.83 29.10 0.17 0.78 16 14 C 0.52 -0.22 7.82 87.66 0.69 0.47 16 15 O -0.57 -5.69 15.63 -3.04 -0.05 -5.74 16 16 N -0.70 4.05 5.27 -440.02 -2.32 1.73 16 17 C 0.12 -0.52 4.32 45.52 0.20 -0.33 16 18 H 0.09 0.02 7.46 -2.39 -0.02 0.01 16 19 C -0.12 0.95 7.29 31.12 0.23 1.18 16 20 C -0.07 0.44 3.78 -11.01 -0.04 0.40 16 21 H 0.11 -0.67 7.45 -2.39 -0.02 -0.69 16 22 C -0.11 0.38 5.29 -19.82 -0.10 0.28 16 23 C 0.12 0.03 7.24 22.37 0.16 0.19 16 24 F -0.14 -0.27 16.36 44.97 0.74 0.47 16 25 C -0.20 -0.19 10.01 22.36 0.22 0.04 16 26 C 0.11 0.11 7.30 22.37 0.16 0.28 16 27 F -0.14 -0.60 17.27 44.97 0.78 0.17 16 28 C -0.16 0.51 10.03 22.32 0.22 0.74 16 29 C -0.06 0.32 8.60 22.26 0.19 0.51 16 30 C -0.14 0.80 7.25 31.12 0.23 1.02 16 31 C -0.10 -0.31 9.69 22.25 0.22 -0.10 16 32 C -0.11 -0.69 8.62 22.38 0.19 -0.50 16 33 H 0.39 0.00 8.60 -74.06 -0.64 -0.64 16 34 H 0.10 0.58 7.96 -2.39 -0.02 0.56 16 35 H -0.28 -1.25 6.86 99.48 0.68 -0.57 16 36 H -0.29 -2.05 7.11 99.48 0.71 -1.34 16 37 H 0.15 0.38 6.43 -2.91 -0.02 0.36 16 38 H 0.16 0.08 8.06 -2.91 -0.02 0.06 16 39 H 0.18 -0.06 8.06 -2.91 -0.02 -0.08 16 40 H 0.14 0.05 8.06 -2.91 -0.02 0.03 16 41 H 0.15 -0.57 8.06 -2.91 -0.02 -0.59 16 42 H 0.13 -1.57 8.08 -2.39 -0.02 -1.59 16 43 H 0.13 -1.41 8.08 -2.39 -0.02 -1.43 16 44 H 0.42 -4.78 8.70 -92.71 -0.81 -5.59 16 45 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 46 H 0.11 -0.94 7.72 -2.39 -0.02 -0.96 16 47 H 0.15 -0.08 8.06 -2.91 -0.02 -0.10 16 48 H 0.16 -1.12 8.06 -2.91 -0.02 -1.15 16 49 H 0.17 -1.82 6.66 -2.91 -0.02 -1.84 16 50 H 0.11 -0.79 6.31 -2.39 -0.02 -0.81 16 51 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 52 H 0.14 -0.01 8.06 -2.91 -0.02 -0.03 16 53 H 0.11 0.81 8.06 -2.91 -0.02 0.78 16 Total: 0.00 -23.61 449.16 3.30 -20.31 By element: Atomic # 1 Polarization: -16.17 SS G_CDS: -0.45 Total: -16.62 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 5.07 Total: 5.23 kcal Atomic # 7 Polarization: 1.60 SS G_CDS: -3.26 Total: -1.66 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -1.69 Total: -10.67 kcal Atomic # 9 Polarization: -0.87 SS G_CDS: 1.51 Total: 0.64 kcal Atomic # 14 Polarization: 0.64 SS G_CDS: 2.12 Total: 2.76 kcal Total: -23.61 3.30 -20.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_13287746.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.493 kcal (2) G-P(sol) polarization free energy of solvation -23.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds