Wall clock time and date at job start Sun Mar 7 2021 00:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86303 * 109.46803 * 2 1 4 4 C 1.50696 * 109.47403 * 120.00151 * 2 1 3 5 5 C 1.38358 * 120.34598 * 64.99926 * 4 2 1 6 6 C 1.40027 * 118.28347 * 179.97438 * 5 4 2 7 7 C 1.47846 * 120.55375 * 179.97438 * 6 5 4 8 8 O 1.21543 * 120.00084 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99806 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 6 11 11 H 1.09004 * 112.85009 * 334.67148 * 10 9 7 12 12 C 1.53786 * 113.61381 * 105.86479 * 10 9 7 13 13 C 1.54050 * 86.98144 * 89.16531 * 12 10 9 14 14 H 1.08997 * 113.69243 * 270.87038 * 13 12 10 15 15 C 1.50698 * 113.61519 * 139.98082 * 13 12 10 16 16 C 1.38189 * 119.99115 * 322.49910 * 15 13 12 17 17 C 1.38222 * 120.05351 * 179.97438 * 16 15 13 18 18 C 1.38457 * 120.02582 * 0.02562 * 17 16 15 19 19 F 1.35097 * 120.01303 * 179.97438 * 18 17 16 20 20 C 1.38431 * 119.97306 * 359.96519 * 18 17 16 21 21 C 1.38400 * 119.95263 * 359.77630 * 20 18 17 22 22 F 1.35095 * 120.01580 * 180.25265 * 21 20 18 23 23 C 1.53773 * 113.61768 * 203.47515 * 10 9 7 24 24 C 1.39516 * 118.88651 * 0.25096 * 6 5 4 25 25 N 1.31698 * 120.56412 * 359.48378 * 24 6 5 26 26 C 1.31930 * 121.87905 * 0.53299 * 25 24 6 27 27 H 0.96704 * 114.00612 * 299.99565 * 1 2 3 28 28 H 1.09001 * 109.47415 * 240.00632 * 2 1 3 29 29 H 1.48501 * 110.00253 * 300.00344 * 3 2 1 30 30 H 1.48503 * 109.99729 * 61.32069 * 3 2 1 31 31 H 1.07997 * 120.85929 * 0.02562 * 5 4 2 32 32 H 0.96999 * 120.00047 * 0.02562 * 9 7 6 33 33 H 1.09004 * 113.61439 * 203.67013 * 12 10 9 34 34 H 1.09002 * 113.61266 * 334.57214 * 12 10 9 35 35 H 1.08003 * 119.97204 * 359.97438 * 16 15 13 36 36 H 1.08006 * 119.98942 * 179.97438 * 17 16 15 37 37 H 1.08004 * 120.02630 * 180.02562 * 20 18 17 38 38 H 1.09000 * 113.61571 * 25.42974 * 23 10 9 39 39 H 1.09005 * 113.61978 * 156.33665 * 23 10 9 40 40 H 1.07998 * 119.71662 * 179.74592 * 24 6 5 41 41 H 1.08001 * 119.45835 * 179.75313 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6886 -2.0612 1.4057 6 6 2.1757 -2.6779 2.5647 7 6 1.9447 -4.1186 2.8032 8 8 1.3271 -4.7779 1.9900 9 7 2.4190 -4.7009 3.9223 10 6 2.1897 -6.1283 4.1590 11 1 1.3056 -6.5059 3.6453 12 6 3.4417 -6.9964 3.9495 13 6 3.7635 -6.7472 5.4353 14 1 4.3645 -5.8548 5.6096 15 6 4.2988 -7.9618 6.1489 16 6 3.7962 -9.2145 5.8526 17 6 4.2866 -10.3294 6.5060 18 6 5.2819 -10.1922 7.4587 19 9 5.7607 -11.2821 8.0975 20 6 5.7864 -8.9379 7.7562 21 6 5.2983 -7.8228 7.0975 22 9 5.7933 -6.5987 7.3831 23 6 2.2561 -6.5251 5.6432 24 6 2.8775 -1.9088 3.4933 25 7 3.0874 -0.6264 3.2787 26 6 2.6405 -0.0188 2.1963 27 1 -0.3934 0.4416 0.7651 28 1 1.7923 -0.5137 -0.8900 29 1 1.5613 2.4680 -1.2084 30 1 1.5877 2.4585 1.2243 31 1 1.1384 -2.6256 0.6674 32 1 2.9115 -4.1746 4.5715 33 1 3.2173 -8.0381 3.7200 34 1 4.1674 -6.5578 3.2646 35 1 3.0195 -9.3224 5.1100 36 1 3.8927 -11.3080 6.2740 37 1 6.5631 -8.8299 8.4988 38 1 2.0254 -5.7064 6.3248 39 1 1.7082 -7.4382 5.8761 40 1 3.2556 -2.3698 4.3938 41 1 2.8317 1.0356 2.0618 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13428180_13287814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:23 Heat of formation + Delta-G solvation = -58.738833 kcal Electronic energy + Delta-G solvation = -28721.986068 eV Core-core repulsion = 24205.545725 eV Total energy + Delta-G solvation = -4516.440343 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.112 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.07825 -50.02014 -42.09594 -41.34734 -40.07384 -38.75281 -38.11507 -34.90987 -33.82666 -33.10035 -31.96654 -31.44146 -27.39076 -26.95982 -26.82621 -25.50784 -24.31612 -23.92243 -22.98339 -21.89178 -20.48029 -19.49772 -19.25255 -18.32188 -18.25058 -18.00094 -17.80263 -17.30527 -17.05547 -16.91221 -16.59554 -16.53912 -16.34960 -16.08725 -15.97316 -15.59403 -15.46322 -15.34611 -14.85302 -14.66698 -14.47094 -14.26430 -14.10380 -13.91054 -13.68531 -13.60710 -13.48454 -12.93747 -12.85688 -12.67423 -12.23807 -12.11353 -11.90927 -11.50112 -11.40402 -11.10363 -10.77091 -10.59499 -10.46196 -10.25276 -10.17183 -9.67520 -5.10654 -0.63404 -0.20545 -0.12814 -0.07195 1.08386 1.43945 1.64416 1.79007 1.86573 2.17800 2.56818 2.75896 2.95775 3.14094 3.19264 3.31412 3.32591 3.35946 3.44453 3.50979 3.54731 3.60842 3.68322 3.69381 3.77188 3.89915 4.03542 4.04219 4.13950 4.41224 4.41988 4.48917 4.58210 4.62287 4.68405 4.73712 4.77910 4.80097 4.82207 4.85245 4.91945 4.94186 5.10982 5.24494 5.38737 5.63120 6.22659 6.23477 6.57620 6.98555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.525 6.525 2 C -0.071 4.071 3 Si 0.687 3.313 4 C -0.177 4.177 5 C 0.013 3.987 6 C -0.189 4.189 7 C 0.569 3.431 8 O -0.525 6.525 9 N -0.709 5.709 10 C 0.121 3.879 11 H 0.110 0.890 12 C -0.142 4.142 13 C -0.076 4.076 14 H 0.104 0.896 15 C -0.115 4.115 16 C -0.060 4.060 17 C -0.159 4.159 18 C 0.128 3.872 19 F -0.130 7.130 20 C -0.190 4.190 21 C 0.134 3.866 22 F -0.128 7.128 23 C -0.134 4.134 24 C 0.140 3.860 25 N -0.477 5.477 26 C 0.128 3.872 27 H 0.377 0.623 28 H 0.125 0.875 29 H -0.250 1.250 30 H -0.255 1.255 31 H 0.153 0.847 32 H 0.401 0.599 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.161 0.839 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.372 0.740 0.909 1.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.331 6.331 2 C -0.182 4.182 3 Si 0.587 3.413 4 C -0.180 4.180 5 C -0.013 4.013 6 C -0.194 4.194 7 C 0.356 3.644 8 O -0.401 6.401 9 N -0.360 5.360 10 C 0.015 3.985 11 H 0.128 0.872 12 C -0.181 4.181 13 C -0.094 4.094 14 H 0.122 0.878 15 C -0.116 4.116 16 C -0.078 4.078 17 C -0.178 4.178 18 C 0.108 3.892 19 F -0.108 7.108 20 C -0.210 4.210 21 C 0.114 3.886 22 F -0.107 7.107 23 C -0.172 4.172 24 C -0.018 4.018 25 N -0.185 5.185 26 C -0.029 4.029 27 H 0.225 0.775 28 H 0.142 0.858 29 H -0.175 1.175 30 H -0.180 1.180 31 H 0.170 0.830 32 H 0.237 0.763 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.099 0.901 39 H 0.121 0.879 40 H 0.178 0.822 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.300 1.278 0.426 1.872 hybrid contribution -0.887 -0.497 0.623 1.193 sum 0.413 0.780 1.049 1.371 Atomic orbital electron populations 1.86651 1.17222 1.79926 1.49331 1.24994 0.84269 1.11242 0.97652 0.95019 0.91386 0.73935 0.80977 1.21363 1.02086 0.95347 0.99163 1.21643 0.91568 0.93257 0.94872 1.21008 1.05057 0.94941 0.98442 1.17991 0.78667 0.86341 0.81451 1.90823 1.40060 1.64523 1.44688 1.45565 1.57600 1.10096 1.22779 1.21862 0.99430 0.80221 0.96948 0.87210 1.23637 0.98086 1.01218 0.95114 1.21617 0.96512 0.95674 0.95598 0.87768 1.19786 0.97385 0.96319 0.98150 1.20773 0.98696 0.90059 0.98261 1.21261 0.97963 1.01033 0.97542 1.17341 0.95330 0.82637 0.93861 1.91561 1.86942 1.52205 1.80122 1.21086 1.04662 0.90796 1.04406 1.17140 0.94880 0.79980 0.96577 1.91529 1.86304 1.40534 1.92307 1.23445 0.94864 1.03140 0.95762 1.23043 0.92016 0.89557 0.97217 1.67749 1.19455 1.10458 1.20802 1.22973 0.91336 1.00187 0.88354 0.77493 0.85756 1.17488 1.17974 0.82978 0.76268 0.88295 0.90263 0.83675 0.83741 0.83288 0.90087 0.87919 0.82196 0.81961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.12 12.84 -35.23 -0.45 -0.57 16 2 C -0.07 0.10 2.82 36.00 0.10 0.21 16 3 Si 0.69 -1.63 29.91 -169.99 -5.08 -6.72 16 4 C -0.18 0.15 5.35 -104.54 -0.56 -0.41 16 5 C 0.01 0.01 9.38 -38.87 -0.36 -0.36 16 6 C -0.19 -0.01 5.89 -104.82 -0.62 -0.63 16 7 C 0.57 0.56 7.78 -12.33 -0.10 0.46 16 8 O -0.52 -2.48 16.04 5.33 0.09 -2.40 16 9 N -0.71 1.39 5.22 -53.96 -0.28 1.11 16 10 C 0.12 -0.26 4.29 -67.12 -0.29 -0.55 16 11 H 0.11 -0.08 7.50 -51.93 -0.39 -0.47 16 12 C -0.14 0.37 7.27 -25.77 -0.19 0.19 16 13 C -0.08 0.21 3.80 -90.82 -0.34 -0.14 16 14 H 0.10 -0.29 7.44 -51.93 -0.39 -0.67 16 15 C -0.12 0.17 5.30 -104.54 -0.55 -0.38 16 16 C -0.06 0.14 8.61 -39.61 -0.34 -0.20 16 17 C -0.16 0.23 10.02 -39.51 -0.40 -0.17 16 18 C 0.13 0.03 7.30 -39.43 -0.29 -0.26 16 19 F -0.13 -0.21 17.27 2.25 0.04 -0.17 16 20 C -0.19 -0.01 10.01 -39.45 -0.39 -0.40 16 21 C 0.13 0.00 7.25 -39.43 -0.29 -0.29 16 22 F -0.13 -0.11 16.36 2.25 0.04 -0.07 16 23 C -0.13 0.47 7.29 -25.92 -0.19 0.28 16 24 C 0.14 -0.15 10.71 -17.13 -0.18 -0.33 16 25 N -0.48 -0.16 10.35 -12.91 -0.13 -0.30 16 26 C 0.13 -0.11 9.84 -17.47 -0.17 -0.28 16 27 H 0.38 -1.01 8.70 45.56 0.40 -0.61 16 28 H 0.12 -0.27 7.96 -51.93 -0.41 -0.69 16 29 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 30 H -0.25 0.18 7.01 56.52 0.40 0.58 16 31 H 0.15 0.17 7.74 -52.49 -0.41 -0.24 16 32 H 0.40 -1.75 6.77 -40.82 -0.28 -2.02 16 33 H 0.10 -0.35 6.32 -51.93 -0.33 -0.67 16 34 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 35 H 0.15 -0.67 6.66 -52.48 -0.35 -1.02 16 36 H 0.14 -0.44 8.06 -52.48 -0.42 -0.86 16 37 H 0.15 -0.14 8.06 -52.48 -0.42 -0.56 16 38 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 39 H 0.10 -0.42 7.72 -51.93 -0.40 -0.82 16 40 H 0.16 -0.67 6.42 -52.49 -0.34 -1.00 16 41 H 0.16 -0.45 4.85 -52.49 -0.25 -0.71 16 LS Contribution 355.46 15.07 5.36 5.36 Total: 0.00 -8.30 355.46 -9.63 -17.93 By element: Atomic # 1 Polarization: -6.88 SS G_CDS: -4.04 Total: -10.92 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -5.16 Total: -3.25 kcal Atomic # 7 Polarization: 1.22 SS G_CDS: -0.42 Total: 0.81 kcal Atomic # 8 Polarization: -2.60 SS G_CDS: -0.37 Total: -2.97 kcal Atomic # 9 Polarization: -0.32 SS G_CDS: 0.08 Total: -0.24 kcal Atomic # 14 Polarization: -1.63 SS G_CDS: -5.08 Total: -6.72 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -8.30 -9.63 -17.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_13287814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.812 kcal (2) G-P(sol) polarization free energy of solvation -8.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds