Wall clock time and date at job start Sun Mar 7 2021 00:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86303 * 109.46803 * 2 1 4 4 C 1.50696 * 109.47403 * 120.00151 * 2 1 3 5 5 C 1.38358 * 120.34598 * 64.99926 * 4 2 1 6 6 C 1.40027 * 118.28347 * 179.97438 * 5 4 2 7 7 C 1.47846 * 120.55375 * 179.97438 * 6 5 4 8 8 O 1.21543 * 120.00084 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99806 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 6 11 11 H 1.09004 * 112.85009 * 334.67148 * 10 9 7 12 12 C 1.53786 * 113.61381 * 105.86479 * 10 9 7 13 13 C 1.54050 * 86.98144 * 89.16531 * 12 10 9 14 14 H 1.08997 * 113.69243 * 270.87038 * 13 12 10 15 15 C 1.50698 * 113.61519 * 139.98082 * 13 12 10 16 16 C 1.38189 * 119.99115 * 322.49910 * 15 13 12 17 17 C 1.38222 * 120.05351 * 179.97438 * 16 15 13 18 18 C 1.38457 * 120.02582 * 0.02562 * 17 16 15 19 19 F 1.35097 * 120.01303 * 179.97438 * 18 17 16 20 20 C 1.38431 * 119.97306 * 359.96519 * 18 17 16 21 21 C 1.38400 * 119.95263 * 359.77630 * 20 18 17 22 22 F 1.35095 * 120.01580 * 180.25265 * 21 20 18 23 23 C 1.53773 * 113.61768 * 203.47515 * 10 9 7 24 24 C 1.39516 * 118.88651 * 0.25096 * 6 5 4 25 25 N 1.31698 * 120.56412 * 359.48378 * 24 6 5 26 26 C 1.31930 * 121.87905 * 0.53299 * 25 24 6 27 27 H 0.96704 * 114.00612 * 299.99565 * 1 2 3 28 28 H 1.09001 * 109.47415 * 240.00632 * 2 1 3 29 29 H 1.48501 * 110.00253 * 300.00344 * 3 2 1 30 30 H 1.48503 * 109.99729 * 61.32069 * 3 2 1 31 31 H 1.07997 * 120.85929 * 0.02562 * 5 4 2 32 32 H 0.96999 * 120.00047 * 0.02562 * 9 7 6 33 33 H 1.09004 * 113.61439 * 203.67013 * 12 10 9 34 34 H 1.09002 * 113.61266 * 334.57214 * 12 10 9 35 35 H 1.08003 * 119.97204 * 359.97438 * 16 15 13 36 36 H 1.08006 * 119.98942 * 179.97438 * 17 16 15 37 37 H 1.08004 * 120.02630 * 180.02562 * 20 18 17 38 38 H 1.09000 * 113.61571 * 25.42974 * 23 10 9 39 39 H 1.09005 * 113.61978 * 156.33665 * 23 10 9 40 40 H 1.07998 * 119.71662 * 179.74592 * 24 6 5 41 41 H 1.08001 * 119.45835 * 179.75313 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6886 -2.0612 1.4057 6 6 2.1757 -2.6779 2.5647 7 6 1.9447 -4.1186 2.8032 8 8 1.3271 -4.7779 1.9900 9 7 2.4190 -4.7009 3.9223 10 6 2.1897 -6.1283 4.1590 11 1 1.3056 -6.5059 3.6453 12 6 3.4417 -6.9964 3.9495 13 6 3.7635 -6.7472 5.4353 14 1 4.3645 -5.8548 5.6096 15 6 4.2988 -7.9618 6.1489 16 6 3.7962 -9.2145 5.8526 17 6 4.2866 -10.3294 6.5060 18 6 5.2819 -10.1922 7.4587 19 9 5.7607 -11.2821 8.0975 20 6 5.7864 -8.9379 7.7562 21 6 5.2983 -7.8228 7.0975 22 9 5.7933 -6.5987 7.3831 23 6 2.2561 -6.5251 5.6432 24 6 2.8775 -1.9088 3.4933 25 7 3.0874 -0.6264 3.2787 26 6 2.6405 -0.0188 2.1963 27 1 -0.3934 0.4416 0.7651 28 1 1.7923 -0.5137 -0.8900 29 1 1.5613 2.4680 -1.2084 30 1 1.5877 2.4585 1.2243 31 1 1.1384 -2.6256 0.6674 32 1 2.9115 -4.1746 4.5715 33 1 3.2173 -8.0381 3.7200 34 1 4.1674 -6.5578 3.2646 35 1 3.0195 -9.3224 5.1100 36 1 3.8927 -11.3080 6.2740 37 1 6.5631 -8.8299 8.4988 38 1 2.0254 -5.7064 6.3248 39 1 1.7082 -7.4382 5.8761 40 1 3.2556 -2.3698 4.3938 41 1 2.8317 1.0356 2.0618 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_13287814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:22 Heat of formation + Delta-G solvation = -56.790798 kcal Electronic energy + Delta-G solvation = -28721.901595 eV Core-core repulsion = 24205.545725 eV Total energy + Delta-G solvation = -4516.355870 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.112 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.06684 -50.04108 -42.04741 -41.22689 -40.05860 -38.68154 -38.07524 -34.90079 -33.80093 -33.03381 -31.85989 -31.34162 -27.31209 -26.74631 -26.72327 -25.42353 -24.22007 -23.87272 -22.88291 -21.85784 -20.34439 -19.44896 -19.21250 -18.25969 -18.17196 -17.94099 -17.74959 -17.19564 -17.04478 -16.83049 -16.52912 -16.49096 -16.36605 -16.08966 -15.94695 -15.54105 -15.39627 -15.23121 -14.77941 -14.61354 -14.42218 -14.22919 -13.98034 -13.75397 -13.57687 -13.44607 -13.43143 -12.84947 -12.80870 -12.55675 -12.11032 -12.06160 -11.74946 -11.46396 -11.31777 -11.10225 -10.70688 -10.57651 -10.41777 -10.15594 -10.07648 -9.59223 -4.94376 -0.58859 -0.12245 -0.03900 -0.02826 1.21962 1.57004 1.62775 1.88249 1.97072 2.28514 2.61003 2.82855 3.08938 3.29663 3.32649 3.39480 3.44832 3.49300 3.62315 3.64555 3.67325 3.71054 3.74262 3.86755 3.93674 4.08392 4.09301 4.17492 4.26460 4.53449 4.59088 4.69828 4.74640 4.80478 4.82986 4.84737 4.89250 4.91760 4.93948 5.01164 5.08284 5.10809 5.24187 5.31907 5.53875 5.73134 6.33234 6.40847 6.64313 7.01385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.082 4.082 3 Si 0.773 3.227 4 C -0.173 4.173 5 C 0.000 4.000 6 C -0.197 4.197 7 C 0.569 3.431 8 O -0.570 6.570 9 N -0.694 5.694 10 C 0.114 3.886 11 H 0.096 0.904 12 C -0.138 4.138 13 C -0.073 4.073 14 H 0.105 0.895 15 C -0.111 4.111 16 C -0.056 4.056 17 C -0.155 4.155 18 C 0.107 3.893 19 F -0.143 7.143 20 C -0.199 4.199 21 C 0.117 3.883 22 F -0.137 7.137 23 C -0.122 4.122 24 C 0.147 3.853 25 N -0.494 5.494 26 C 0.128 3.872 27 H 0.388 0.612 28 H 0.129 0.871 29 H -0.299 1.299 30 H -0.271 1.271 31 H 0.138 0.862 32 H 0.414 0.586 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.172 0.828 36 H 0.161 0.839 37 H 0.150 0.850 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.190 0.810 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.466 0.958 1.441 2.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.190 4.190 3 Si 0.677 3.323 4 C -0.175 4.175 5 C -0.027 4.027 6 C -0.202 4.202 7 C 0.356 3.644 8 O -0.450 6.450 9 N -0.346 5.346 10 C 0.009 3.991 11 H 0.114 0.886 12 C -0.176 4.176 13 C -0.091 4.091 14 H 0.123 0.877 15 C -0.112 4.112 16 C -0.073 4.073 17 C -0.174 4.174 18 C 0.087 3.913 19 F -0.121 7.121 20 C -0.219 4.219 21 C 0.097 3.903 22 F -0.115 7.115 23 C -0.160 4.160 24 C -0.012 4.012 25 N -0.202 5.202 26 C -0.028 4.028 27 H 0.237 0.763 28 H 0.147 0.853 29 H -0.226 1.226 30 H -0.197 1.197 31 H 0.156 0.844 32 H 0.253 0.747 33 H 0.129 0.871 34 H 0.088 0.912 35 H 0.189 0.811 36 H 0.179 0.821 37 H 0.168 0.832 38 H 0.106 0.894 39 H 0.132 0.868 40 H 0.207 0.793 41 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.423 1.480 1.010 2.288 hybrid contribution -0.944 -0.563 0.430 1.181 sum 0.478 0.917 1.440 1.773 Atomic orbital electron populations 1.86618 1.18232 1.80433 1.50212 1.25265 0.83623 1.12455 0.97694 0.94041 0.89925 0.71076 0.77278 1.21348 1.01999 0.94762 0.99395 1.21667 0.92016 0.93924 0.95078 1.20995 1.05781 0.94621 0.98809 1.18151 0.78140 0.86561 0.81541 1.90798 1.42370 1.65490 1.46354 1.45488 1.56579 1.10445 1.22039 1.21921 0.99207 0.79957 0.98003 0.88625 1.23645 0.97355 1.01718 0.94930 1.21615 0.96993 0.95244 0.95239 0.87678 1.19970 0.96642 0.97182 0.97431 1.21072 0.98777 0.89254 0.98213 1.21519 0.97059 1.02222 0.96610 1.17575 0.96457 0.82335 0.94904 1.91523 1.87293 1.52762 1.80568 1.21170 1.04944 0.91042 1.04705 1.17308 0.95783 0.79650 0.97526 1.91503 1.86567 1.40933 1.92507 1.23423 0.94144 1.03845 0.94598 1.23437 0.90984 0.89116 0.97637 1.67819 1.20088 1.10999 1.21307 1.23265 0.90668 1.00977 0.87886 0.76282 0.85303 1.22629 1.19741 0.84366 0.74726 0.87115 0.91230 0.81079 0.82097 0.83213 0.89378 0.86802 0.79343 0.80162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.65 12.84 -148.98 -1.91 -2.56 16 2 C -0.08 0.21 2.82 71.23 0.20 0.41 16 3 Si 0.77 -3.82 29.91 68.60 2.05 -1.77 16 4 C -0.17 0.25 5.35 -19.81 -0.11 0.14 16 5 C 0.00 0.00 9.38 22.73 0.21 0.21 16 6 C -0.20 -0.10 5.89 -19.99 -0.12 -0.22 16 7 C 0.57 1.48 7.78 86.79 0.68 2.16 16 8 O -0.57 -6.30 16.04 -3.85 -0.06 -6.37 16 9 N -0.69 2.96 5.22 -442.93 -2.31 0.65 16 10 C 0.11 -0.55 4.29 45.52 0.20 -0.36 16 11 H 0.10 -0.12 7.50 -2.39 -0.02 -0.14 16 12 C -0.14 0.84 7.27 31.21 0.23 1.07 16 13 C -0.07 0.48 3.80 -10.92 -0.04 0.44 16 14 H 0.11 -0.69 7.44 -2.39 -0.02 -0.71 16 15 C -0.11 0.43 5.30 -19.81 -0.10 0.32 16 16 C -0.06 0.35 8.61 22.25 0.19 0.54 16 17 C -0.16 0.58 10.02 22.32 0.22 0.80 16 18 C 0.11 0.09 7.30 22.37 0.16 0.26 16 19 F -0.14 -0.59 17.27 44.97 0.78 0.19 16 20 C -0.20 -0.17 10.01 22.35 0.22 0.06 16 21 C 0.12 0.01 7.25 22.37 0.16 0.17 16 22 F -0.14 -0.26 16.36 44.97 0.74 0.47 16 23 C -0.12 1.04 7.29 31.12 0.23 1.26 16 24 C 0.15 -0.42 10.71 85.02 0.91 0.49 16 25 N -0.49 0.11 10.35 -194.76 -2.01 -1.90 16 26 C 0.13 -0.29 9.84 84.70 0.83 0.54 16 27 H 0.39 -1.85 8.70 -74.05 -0.64 -2.50 16 28 H 0.13 -0.50 7.96 -2.39 -0.02 -0.52 16 29 H -0.30 -0.96 7.11 99.48 0.71 -0.25 16 30 H -0.27 0.60 7.01 99.48 0.70 1.30 16 31 H 0.14 0.61 7.74 -2.91 -0.02 0.59 16 32 H 0.41 -4.08 6.77 -92.71 -0.63 -4.71 16 33 H 0.11 -0.94 6.32 -2.39 -0.02 -0.96 16 34 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.17 -2.01 6.66 -2.91 -0.02 -2.03 16 36 H 0.16 -1.20 8.06 -2.91 -0.02 -1.22 16 37 H 0.15 -0.07 8.06 -2.91 -0.02 -0.10 16 38 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 39 H 0.11 -1.17 7.72 -2.38 -0.02 -1.19 16 40 H 0.19 -1.89 6.42 -2.91 -0.02 -1.91 16 41 H 0.18 -1.23 4.85 -2.91 -0.01 -1.24 16 Total: 0.00 -20.88 355.46 1.22 -19.65 By element: Atomic # 1 Polarization: -16.56 SS G_CDS: -0.12 Total: -16.67 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 4.08 Total: 8.31 kcal Atomic # 7 Polarization: 3.08 SS G_CDS: -4.33 Total: -1.25 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -1.97 Total: -8.93 kcal Atomic # 9 Polarization: -0.85 SS G_CDS: 1.51 Total: 0.66 kcal Atomic # 14 Polarization: -3.82 SS G_CDS: 2.05 Total: -1.77 kcal Total: -20.88 1.22 -19.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_13287814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.138 kcal (2) G-P(sol) polarization free energy of solvation -20.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds