Wall clock time and date at job start Sun Mar 7 2021 00:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36412 * 125.80477 * 2 1 4 4 C 1.47378 * 127.18959 * 0.02562 * 3 2 1 5 5 O 1.21616 * 119.99983 * 359.70873 * 4 3 2 6 6 N 1.34781 * 120.00308 * 179.71394 * 4 3 2 7 7 C 1.46501 * 120.00128 * 180.02562 * 6 4 3 8 8 H 1.08996 * 112.84970 * 23.80204 * 7 6 4 9 9 C 1.53781 * 113.61097 * 154.99792 * 7 6 4 10 10 C 1.53778 * 87.08010 * 89.11648 * 9 7 6 11 11 H 1.09002 * 113.61784 * 270.79650 * 10 9 7 12 12 C 1.50704 * 113.61863 * 139.97869 * 10 9 7 13 13 C 1.38446 * 119.98890 * 119.99365 * 12 10 9 14 14 F 1.35096 * 120.01262 * 0.02562 * 13 12 10 15 15 C 1.38445 * 119.97491 * 180.02562 * 13 12 10 16 16 C 1.38398 * 119.94689 * 0.26226 * 15 13 12 17 17 F 1.35104 * 120.00979 * 179.72459 * 16 15 13 18 18 C 1.38496 * 119.97471 * 359.50778 * 16 15 13 19 19 C 1.38184 * 120.02533 * 0.46882 * 18 16 15 20 20 C 1.53779 * 113.61284 * 252.49456 * 7 6 4 21 21 C 1.47022 * 105.61898 * 179.75291 * 3 2 1 22 22 C 1.34180 * 105.95118 * 0.21972 * 21 3 2 23 23 C 1.50698 * 125.43142 * 179.97438 * 22 21 3 24 24 O 1.42900 * 109.46840 * 65.00789 * 23 22 21 25 25 Si 1.86305 * 109.46801 * 185.00022 * 23 22 21 26 26 O 1.33651 * 125.80075 * 180.13247 * 2 1 3 27 27 H 1.09003 * 109.47204 * 90.00522 * 1 2 3 28 28 H 1.09002 * 109.47406 * 210.00662 * 1 2 3 29 29 H 1.09003 * 109.47119 * 330.00291 * 1 2 3 30 30 H 0.96993 * 119.99582 * 359.97438 * 6 4 3 31 31 H 1.08989 * 113.61505 * 334.56571 * 9 7 6 32 32 H 1.09000 * 113.68828 * 203.67249 * 9 7 6 33 33 H 1.08002 * 120.02257 * 179.97438 * 15 13 12 34 34 H 1.08002 * 119.98361 * 180.25979 * 18 16 15 35 35 H 1.08001 * 119.97146 * 179.76917 * 19 18 16 36 36 H 1.09004 * 113.61428 * 156.33522 * 20 7 6 37 37 H 1.09002 * 113.61588 * 25.43318 * 20 7 6 38 38 H 1.07998 * 127.02327 * 180.24369 * 21 3 2 39 39 H 1.08990 * 109.47642 * 304.99980 * 23 22 21 40 40 H 0.96698 * 114.00293 * 59.99890 * 24 23 22 41 41 H 1.48493 * 110.00195 * 180.02562 * 25 23 22 42 42 H 1.48504 * 109.99923 * 301.32309 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3050 1.1063 0.0000 4 6 1.8740 2.5157 0.0005 5 8 0.6890 2.7891 -0.0043 6 7 2.7930 3.5015 0.0063 7 6 2.3645 4.9025 0.0074 8 1 1.3602 5.0376 0.4089 9 6 3.4031 5.8638 0.6091 10 6 3.9910 5.9892 -0.8063 11 1 4.7556 5.2449 -1.0291 12 6 4.4177 7.3904 -1.1609 13 6 5.7378 7.6501 -1.4874 14 9 6.6433 6.6476 -1.4887 15 6 6.1295 8.9376 -1.8126 16 6 5.2017 9.9646 -1.8055 17 9 5.5837 11.2224 -2.1173 18 6 3.8807 9.7015 -1.4832 19 6 3.4908 8.4160 -1.1593 20 6 2.5951 5.6182 -1.3340 21 6 3.6849 0.5990 0.0061 22 6 3.5858 -0.7391 0.0042 23 6 4.7459 -1.7010 0.0082 24 8 5.4705 -1.5682 1.2327 25 14 4.1076 -3.4442 -0.1496 26 8 2.2888 -1.0840 -0.0025 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 3.7381 3.2834 0.0104 31 1 4.0771 5.3881 1.3213 32 1 2.9737 6.7915 0.9873 33 1 7.1591 9.1411 -2.0671 34 1 3.1558 10.5021 -1.4817 35 1 2.4612 8.2125 -0.9044 36 1 1.9435 6.4784 -1.4877 37 1 2.6170 4.9442 -2.1905 38 1 4.5928 1.1839 0.0115 39 1 5.4055 -1.4784 -0.8304 40 1 4.9445 -1.7522 2.0229 41 1 5.2418 -4.4027 -0.1463 42 1 3.1819 -3.7495 0.9707 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13428180_13308374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:27 Heat of formation + Delta-G solvation = -86.864453 kcal Electronic energy + Delta-G solvation = -29733.124653 eV Core-core repulsion = 25090.434551 eV Total energy + Delta-G solvation = -4642.690102 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.116 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.05424 -50.00052 -43.76560 -41.55582 -40.09451 -38.70172 -38.20784 -34.74272 -33.96978 -33.12368 -31.96227 -31.49573 -29.44479 -26.89789 -26.67411 -25.69996 -24.56819 -24.06120 -22.99515 -22.24158 -20.84150 -20.21510 -19.35603 -19.03111 -18.28361 -18.05433 -17.72586 -17.32220 -17.03413 -16.99167 -16.77467 -16.53564 -16.33026 -16.08643 -15.97036 -15.69991 -15.50854 -15.28855 -15.18350 -14.67919 -14.31109 -14.17115 -14.04996 -13.95700 -13.86034 -13.80991 -13.63291 -13.54870 -12.99276 -12.89543 -12.86856 -12.64627 -12.17599 -12.11145 -11.83882 -11.43958 -11.08975 -10.91304 -10.74824 -10.19721 -10.11079 -9.65191 -9.58892 -5.03213 -0.18074 -0.10637 0.27776 0.80808 1.07969 1.40080 1.66386 1.87751 2.08084 2.20075 2.31255 2.78171 3.06529 3.19465 3.31220 3.35881 3.39494 3.50747 3.55221 3.69667 3.73863 3.75889 3.80821 3.94192 4.06993 4.10344 4.24132 4.38151 4.47526 4.53089 4.53570 4.59406 4.64339 4.68879 4.71934 4.76315 4.80514 4.83554 4.87773 4.96664 4.98319 5.08849 5.17852 5.19108 5.51064 5.65420 5.88128 6.16880 6.45077 7.19787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.097 3.903 3 C -0.254 4.254 4 C 0.597 3.403 5 O -0.537 6.537 6 N -0.708 5.708 7 C 0.123 3.877 8 H 0.110 0.890 9 C -0.135 4.135 10 C -0.076 4.076 11 H 0.103 0.897 12 C -0.115 4.115 13 C 0.133 3.867 14 F -0.129 7.129 15 C -0.190 4.190 16 C 0.127 3.873 17 F -0.130 7.130 18 C -0.159 4.159 19 C -0.060 4.060 20 C -0.142 4.142 21 C -0.148 4.148 22 C -0.054 4.054 23 C -0.034 4.034 24 O -0.521 6.521 25 Si 0.701 3.299 26 O -0.168 6.168 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.402 0.598 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.158 0.842 39 H 0.138 0.862 40 H 0.381 0.619 41 H -0.249 1.249 42 H -0.256 1.256 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.153 -0.988 -0.645 1.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.044 3.956 3 C -0.259 4.259 4 C 0.386 3.614 5 O -0.415 6.415 6 N -0.358 5.358 7 C 0.017 3.983 8 H 0.128 0.872 9 C -0.173 4.173 10 C -0.094 4.094 11 H 0.121 0.879 12 C -0.116 4.116 13 C 0.114 3.886 14 F -0.107 7.107 15 C -0.209 4.209 16 C 0.108 3.892 17 F -0.109 7.109 18 C -0.178 4.178 19 C -0.078 4.078 20 C -0.181 4.181 21 C -0.167 4.167 22 C -0.102 4.102 23 C -0.144 4.144 24 O -0.328 6.328 25 Si 0.600 3.400 26 O -0.065 6.065 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.129 0.871 30 H 0.237 0.763 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.175 0.825 39 H 0.155 0.845 40 H 0.229 0.771 41 H -0.173 1.173 42 H -0.180 1.180 Dipole moment (debyes) X Y Z Total from point charges -1.600 -1.727 -0.685 2.451 hybrid contribution 1.233 0.753 0.944 1.726 sum -0.367 -0.974 0.259 1.072 Atomic orbital electron populations 1.20710 0.83300 1.05406 1.04884 1.22924 0.94084 0.82837 0.95765 1.21085 0.93255 0.93703 1.17841 1.17148 0.85348 0.83652 0.75266 1.90780 1.16478 1.83957 1.50308 1.45441 1.09738 1.05068 1.75598 1.21815 0.99779 0.79885 0.96818 0.87247 1.23450 0.97965 1.00157 0.95744 1.21562 0.97897 0.92629 0.97294 0.87870 1.19804 0.91697 0.97011 1.03049 1.17143 0.86458 0.84420 1.00612 1.91528 1.66249 1.59076 1.93851 1.21084 1.01785 0.91351 1.06729 1.17341 0.92926 0.79360 0.99602 1.91561 1.91791 1.37322 1.90176 1.21258 0.94710 0.98698 1.03118 1.20776 0.99885 0.90599 0.96536 1.23587 0.95283 1.00999 0.98201 1.22584 0.96448 0.93514 1.04152 1.22552 0.82900 0.95568 1.09203 1.24358 0.91369 1.07999 0.90650 1.86664 1.39392 1.91524 1.15184 0.94387 0.81365 0.73560 0.90664 1.83687 1.16397 1.35050 1.71371 0.88777 0.90024 0.87106 0.76324 0.90232 0.88043 0.83306 0.83743 0.83662 0.88391 0.90342 0.82452 0.84474 0.77080 1.17272 1.17968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.05 9.89 36.00 0.36 0.40 16 2 C 0.10 0.12 7.37 -34.97 -0.26 -0.14 16 3 C -0.25 -0.36 6.31 -103.28 -0.65 -1.01 16 4 C 0.60 1.24 7.81 -12.54 -0.10 1.14 16 5 O -0.54 -2.53 14.45 5.26 0.08 -2.45 16 6 N -0.71 0.41 5.26 -54.11 -0.28 0.13 16 7 C 0.12 -0.16 4.32 -67.12 -0.29 -0.45 16 8 H 0.11 -0.01 7.46 -51.93 -0.39 -0.40 16 9 C -0.14 0.35 7.29 -25.92 -0.19 0.16 16 10 C -0.08 0.15 3.78 -90.96 -0.34 -0.20 16 11 H 0.10 -0.17 7.44 -51.93 -0.39 -0.56 16 12 C -0.11 0.10 5.29 -104.55 -0.55 -0.45 16 13 C 0.13 0.07 7.24 -39.43 -0.29 -0.22 16 14 F -0.13 -0.18 16.36 2.25 0.04 -0.15 16 15 C -0.19 -0.08 10.01 -39.45 -0.39 -0.48 16 16 C 0.13 0.07 7.30 -39.43 -0.29 -0.22 16 17 F -0.13 -0.25 17.27 2.25 0.04 -0.21 16 18 C -0.16 0.18 10.03 -39.51 -0.40 -0.22 16 19 C -0.06 0.12 8.60 -39.60 -0.34 -0.22 16 20 C -0.14 0.27 7.25 -25.92 -0.19 0.09 16 21 C -0.15 0.00 10.48 -37.45 -0.39 -0.39 16 22 C -0.05 0.00 6.18 -35.74 -0.22 -0.22 16 23 C -0.03 0.04 2.97 36.00 0.11 0.15 16 24 O -0.52 0.09 12.88 -35.23 -0.45 -0.36 16 25 Si 0.70 -0.98 32.09 -169.99 -5.46 -6.43 16 26 O -0.17 -0.15 8.90 7.66 0.07 -0.08 16 27 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16 28 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 29 H 0.11 0.07 6.49 -51.93 -0.34 -0.26 16 30 H 0.40 -0.95 7.87 -40.82 -0.32 -1.27 16 31 H 0.08 -0.20 8.14 -51.93 -0.42 -0.63 16 32 H 0.10 -0.34 7.72 -51.93 -0.40 -0.74 16 33 H 0.15 -0.09 8.06 -52.49 -0.42 -0.51 16 34 H 0.14 -0.40 8.06 -52.49 -0.42 -0.83 16 35 H 0.15 -0.61 6.66 -52.49 -0.35 -0.96 16 36 H 0.10 -0.29 6.31 -51.93 -0.33 -0.62 16 37 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 38 H 0.16 -0.30 7.74 -52.49 -0.41 -0.71 16 39 H 0.14 -0.39 7.96 -51.93 -0.41 -0.80 16 40 H 0.38 -1.05 8.70 45.56 0.40 -0.65 16 41 H -0.25 -0.29 7.11 56.52 0.40 0.11 16 42 H -0.26 -0.34 7.11 56.52 0.40 0.06 16 LS Contribution 366.60 15.07 5.52 5.52 Total: 0.00 -7.15 366.60 -9.54 -16.69 By element: Atomic # 1 Polarization: -5.73 SS G_CDS: -4.67 Total: -10.40 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -4.43 Total: -2.27 kcal Atomic # 7 Polarization: 0.41 SS G_CDS: -0.28 Total: 0.13 kcal Atomic # 8 Polarization: -2.58 SS G_CDS: -0.31 Total: -2.89 kcal Atomic # 9 Polarization: -0.43 SS G_CDS: 0.08 Total: -0.35 kcal Atomic # 14 Polarization: -0.98 SS G_CDS: -5.46 Total: -6.43 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -7.15 -9.54 -16.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_13308374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.173 kcal (2) G-P(sol) polarization free energy of solvation -7.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds