Wall clock time and date at job start Sun Mar 7 2021 00:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36412 * 125.80477 * 2 1 4 4 C 1.47378 * 127.18959 * 0.02562 * 3 2 1 5 5 O 1.21616 * 119.99983 * 359.70873 * 4 3 2 6 6 N 1.34781 * 120.00308 * 179.71394 * 4 3 2 7 7 C 1.46501 * 120.00128 * 180.02562 * 6 4 3 8 8 H 1.08996 * 112.84970 * 23.80204 * 7 6 4 9 9 C 1.53781 * 113.61097 * 154.99792 * 7 6 4 10 10 C 1.53778 * 87.08010 * 89.11648 * 9 7 6 11 11 H 1.09002 * 113.61784 * 270.79650 * 10 9 7 12 12 C 1.50704 * 113.61863 * 139.97869 * 10 9 7 13 13 C 1.38446 * 119.98890 * 119.99365 * 12 10 9 14 14 F 1.35096 * 120.01262 * 0.02562 * 13 12 10 15 15 C 1.38445 * 119.97491 * 180.02562 * 13 12 10 16 16 C 1.38398 * 119.94689 * 0.26226 * 15 13 12 17 17 F 1.35104 * 120.00979 * 179.72459 * 16 15 13 18 18 C 1.38496 * 119.97471 * 359.50778 * 16 15 13 19 19 C 1.38184 * 120.02533 * 0.46882 * 18 16 15 20 20 C 1.53779 * 113.61284 * 252.49456 * 7 6 4 21 21 C 1.47022 * 105.61898 * 179.75291 * 3 2 1 22 22 C 1.34180 * 105.95118 * 0.21972 * 21 3 2 23 23 C 1.50698 * 125.43142 * 179.97438 * 22 21 3 24 24 O 1.42900 * 109.46840 * 65.00789 * 23 22 21 25 25 Si 1.86305 * 109.46801 * 185.00022 * 23 22 21 26 26 O 1.33651 * 125.80075 * 180.13247 * 2 1 3 27 27 H 1.09003 * 109.47204 * 90.00522 * 1 2 3 28 28 H 1.09002 * 109.47406 * 210.00662 * 1 2 3 29 29 H 1.09003 * 109.47119 * 330.00291 * 1 2 3 30 30 H 0.96993 * 119.99582 * 359.97438 * 6 4 3 31 31 H 1.08989 * 113.61505 * 334.56571 * 9 7 6 32 32 H 1.09000 * 113.68828 * 203.67249 * 9 7 6 33 33 H 1.08002 * 120.02257 * 179.97438 * 15 13 12 34 34 H 1.08002 * 119.98361 * 180.25979 * 18 16 15 35 35 H 1.08001 * 119.97146 * 179.76917 * 19 18 16 36 36 H 1.09004 * 113.61428 * 156.33522 * 20 7 6 37 37 H 1.09002 * 113.61588 * 25.43318 * 20 7 6 38 38 H 1.07998 * 127.02327 * 180.24369 * 21 3 2 39 39 H 1.08990 * 109.47642 * 304.99980 * 23 22 21 40 40 H 0.96698 * 114.00293 * 59.99890 * 24 23 22 41 41 H 1.48493 * 110.00195 * 180.02562 * 25 23 22 42 42 H 1.48504 * 109.99923 * 301.32309 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3050 1.1063 0.0000 4 6 1.8740 2.5157 0.0005 5 8 0.6890 2.7891 -0.0043 6 7 2.7930 3.5015 0.0063 7 6 2.3645 4.9025 0.0074 8 1 1.3602 5.0376 0.4089 9 6 3.4031 5.8638 0.6091 10 6 3.9910 5.9892 -0.8063 11 1 4.7556 5.2449 -1.0291 12 6 4.4177 7.3904 -1.1609 13 6 5.7378 7.6501 -1.4874 14 9 6.6433 6.6476 -1.4887 15 6 6.1295 8.9376 -1.8126 16 6 5.2017 9.9646 -1.8055 17 9 5.5837 11.2224 -2.1173 18 6 3.8807 9.7015 -1.4832 19 6 3.4908 8.4160 -1.1593 20 6 2.5951 5.6182 -1.3340 21 6 3.6849 0.5990 0.0061 22 6 3.5858 -0.7391 0.0042 23 6 4.7459 -1.7010 0.0082 24 8 5.4705 -1.5682 1.2327 25 14 4.1076 -3.4442 -0.1496 26 8 2.2888 -1.0840 -0.0025 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 3.7381 3.2834 0.0104 31 1 4.0771 5.3881 1.3213 32 1 2.9737 6.7915 0.9873 33 1 7.1591 9.1411 -2.0671 34 1 3.1558 10.5021 -1.4817 35 1 2.4612 8.2125 -0.9044 36 1 1.9435 6.4784 -1.4877 37 1 2.6170 4.9442 -2.1905 38 1 4.5928 1.1839 0.0115 39 1 5.4055 -1.4784 -0.8304 40 1 4.9445 -1.7522 2.0229 41 1 5.2418 -4.4027 -0.1463 42 1 3.1819 -3.7495 0.9707 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_13308374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:26 Heat of formation + Delta-G solvation = -82.150737 kcal Electronic energy + Delta-G solvation = -29732.920251 eV Core-core repulsion = 25090.434551 eV Total energy + Delta-G solvation = -4642.485700 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.116 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.08488 -50.04825 -43.77822 -41.49339 -40.12581 -38.67363 -38.15222 -34.79419 -33.97017 -33.10108 -31.89142 -31.43763 -29.39802 -26.73107 -26.62801 -25.64849 -24.52730 -24.03920 -22.94904 -22.23012 -20.87255 -20.12138 -19.34368 -19.00871 -18.26029 -18.05557 -17.73205 -17.26279 -17.05806 -16.92656 -16.76290 -16.55442 -16.38193 -16.06077 -15.94806 -15.69947 -15.52322 -15.20272 -15.16616 -14.70155 -14.27414 -14.18719 -13.97712 -13.93372 -13.79812 -13.72291 -13.55889 -13.43579 -12.94663 -12.84971 -12.83078 -12.56396 -12.18318 -12.05372 -11.73698 -11.32722 -11.17780 -10.95573 -10.73668 -10.16024 -10.08132 -9.61464 -9.58243 -4.94704 -0.13266 -0.03902 0.22169 0.81536 1.16499 1.41981 1.69940 1.91068 2.10763 2.22042 2.28025 2.81707 3.16976 3.29408 3.38027 3.44249 3.48396 3.62688 3.67252 3.73009 3.76387 3.87144 3.93657 4.07128 4.11192 4.16901 4.37964 4.46062 4.58950 4.61039 4.65182 4.70275 4.73415 4.76848 4.83305 4.86107 4.90789 4.91195 5.00409 5.07697 5.10754 5.14780 5.21571 5.27304 5.58177 5.72124 5.88422 6.32841 6.45954 7.14155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.087 3.913 3 C -0.270 4.270 4 C 0.593 3.407 5 O -0.570 6.570 6 N -0.697 5.697 7 C 0.117 3.883 8 H 0.098 0.902 9 C -0.124 4.124 10 C -0.072 4.072 11 H 0.100 0.900 12 C -0.111 4.111 13 C 0.115 3.885 14 F -0.138 7.138 15 C -0.199 4.199 16 C 0.107 3.893 17 F -0.142 7.142 18 C -0.154 4.154 19 C -0.055 4.055 20 C -0.136 4.136 21 C -0.147 4.147 22 C -0.058 4.058 23 C -0.033 4.033 24 O -0.534 6.534 25 Si 0.770 3.230 26 O -0.173 6.173 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.411 0.589 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.150 0.850 34 H 0.163 0.837 35 H 0.173 0.827 36 H 0.113 0.887 37 H 0.067 0.933 38 H 0.176 0.824 39 H 0.157 0.843 40 H 0.390 0.610 41 H -0.283 1.283 42 H -0.294 1.294 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.354 -0.679 -0.658 1.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.033 3.967 3 C -0.274 4.274 4 C 0.382 3.618 5 O -0.451 6.451 6 N -0.348 5.348 7 C 0.011 3.989 8 H 0.116 0.884 9 C -0.162 4.162 10 C -0.091 4.091 11 H 0.118 0.882 12 C -0.112 4.112 13 C 0.095 3.905 14 F -0.117 7.117 15 C -0.218 4.218 16 C 0.088 3.912 17 F -0.121 7.121 18 C -0.173 4.173 19 C -0.073 4.073 20 C -0.175 4.175 21 C -0.166 4.166 22 C -0.106 4.106 23 C -0.142 4.142 24 O -0.343 6.343 25 Si 0.674 3.326 26 O -0.070 6.070 27 H 0.120 0.880 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.248 0.752 31 H 0.100 0.900 32 H 0.133 0.867 33 H 0.168 0.832 34 H 0.181 0.819 35 H 0.190 0.810 36 H 0.131 0.869 37 H 0.086 0.914 38 H 0.193 0.807 39 H 0.175 0.825 40 H 0.240 0.760 41 H -0.210 1.210 42 H -0.221 1.221 Dipole moment (debyes) X Y Z Total from point charges -1.771 -1.399 -0.706 2.364 hybrid contribution 1.295 0.626 0.986 1.744 sum -0.476 -0.772 0.280 0.949 Atomic orbital electron populations 1.20717 0.82526 1.05423 1.05420 1.23244 0.94798 0.82970 0.95663 1.21206 0.94157 0.93541 1.18490 1.17313 0.85197 0.84291 0.74985 1.90757 1.17778 1.84456 1.52130 1.45401 1.09902 1.05096 1.74403 1.21886 0.99689 0.79656 0.97644 0.88383 1.23427 0.97235 1.00204 0.95306 1.21532 0.97743 0.92014 0.97778 0.88212 1.19973 0.91235 0.97746 1.02295 1.17326 0.87028 0.84269 1.01835 1.91499 1.66703 1.59385 1.94081 1.21166 1.02103 0.91581 1.06970 1.17571 0.93838 0.78934 1.00876 1.91526 1.92013 1.38048 1.90495 1.21525 0.94221 0.99629 1.01896 1.21077 1.00866 0.89827 0.95488 1.23587 0.95448 1.01156 0.97286 1.22796 0.96444 0.93647 1.03705 1.22814 0.82816 0.95937 1.09042 1.24510 0.91285 1.07442 0.90980 1.86641 1.40146 1.91541 1.15939 0.93537 0.78171 0.72026 0.88868 1.83685 1.16832 1.35076 1.71440 0.87954 0.88560 0.88428 0.75250 0.90002 0.86709 0.83202 0.81941 0.80983 0.86924 0.91393 0.80672 0.82519 0.76006 1.20982 1.22084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.04 9.89 71.23 0.70 0.74 16 2 C 0.09 0.25 7.37 25.26 0.19 0.43 16 3 C -0.27 -0.85 6.31 -18.99 -0.12 -0.97 16 4 C 0.59 2.79 7.81 86.65 0.68 3.46 16 5 O -0.57 -5.99 14.45 -4.08 -0.06 -6.05 16 6 N -0.70 0.85 5.26 -443.34 -2.33 -1.48 16 7 C 0.12 -0.35 4.32 45.52 0.20 -0.16 16 8 H 0.10 -0.01 7.46 -2.39 -0.02 -0.03 16 9 C -0.12 0.79 7.29 31.12 0.23 1.02 16 10 C -0.07 0.34 3.78 -11.01 -0.04 0.30 16 11 H 0.10 -0.38 7.44 -2.39 -0.02 -0.40 16 12 C -0.11 0.29 5.29 -19.82 -0.10 0.19 16 13 C 0.11 0.15 7.24 22.37 0.16 0.31 16 14 F -0.14 -0.48 16.36 44.97 0.74 0.26 16 15 C -0.20 -0.32 10.01 22.36 0.22 -0.10 16 16 C 0.11 0.15 7.30 22.37 0.16 0.31 16 17 F -0.14 -0.63 17.27 44.97 0.78 0.15 16 18 C -0.15 0.51 10.03 22.32 0.22 0.73 16 19 C -0.05 0.30 8.60 22.26 0.19 0.50 16 20 C -0.14 0.64 7.25 31.12 0.23 0.87 16 21 C -0.15 0.07 10.48 23.65 0.25 0.32 16 22 C -0.06 0.02 6.18 24.76 0.15 0.18 16 23 C -0.03 0.11 2.97 71.24 0.21 0.32 16 24 O -0.53 0.51 12.88 -148.98 -1.92 -1.40 16 25 Si 0.77 -2.01 32.09 68.60 2.20 0.19 16 26 O -0.17 -0.32 8.90 4.48 0.04 -0.28 16 27 H 0.10 -0.25 8.14 -2.39 -0.02 -0.27 16 28 H 0.10 -0.37 8.14 -2.39 -0.02 -0.39 16 29 H 0.10 0.26 6.49 -2.39 -0.02 0.24 16 30 H 0.41 -2.11 7.87 -92.71 -0.73 -2.84 16 31 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 32 H 0.11 -1.00 7.72 -2.39 -0.02 -1.02 16 33 H 0.15 0.03 8.06 -2.91 -0.02 0.01 16 34 H 0.16 -1.18 8.06 -2.91 -0.02 -1.20 16 35 H 0.17 -1.92 6.66 -2.91 -0.02 -1.94 16 36 H 0.11 -0.87 6.31 -2.39 -0.02 -0.88 16 37 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.18 -0.87 7.74 -2.91 -0.02 -0.89 16 39 H 0.16 -1.13 7.96 -2.39 -0.02 -1.15 16 40 H 0.39 -2.22 8.70 -74.06 -0.64 -2.87 16 41 H -0.28 -0.89 7.11 99.48 0.71 -0.18 16 42 H -0.29 -1.11 7.11 99.48 0.71 -0.40 16 Total: 0.00 -17.81 366.60 2.74 -15.07 By element: Atomic # 1 Polarization: -14.68 SS G_CDS: -0.23 Total: -14.91 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 3.53 Total: 8.45 kcal Atomic # 7 Polarization: 0.85 SS G_CDS: -2.33 Total: -1.48 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -1.94 Total: -7.73 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 1.51 Total: 0.40 kcal Atomic # 14 Polarization: -2.01 SS G_CDS: 2.20 Total: 0.19 kcal Total: -17.81 2.74 -15.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_13308374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.083 kcal (2) G-P(sol) polarization free energy of solvation -17.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds