Wall clock time and date at job start Sun Mar 7 2021 00:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86303 * 109.47238 * 2 1 4 4 C 1.50699 * 109.47115 * 240.00656 * 2 1 3 5 5 C 1.33743 * 125.11318 * 299.99776 * 4 2 1 6 6 C 1.37802 * 115.08149 * 179.97438 * 5 4 2 7 7 C 1.34986 * 114.69744 * 359.97438 * 6 5 4 8 8 C 1.47565 * 125.27260 * 180.02562 * 7 6 5 9 9 C 1.39819 * 119.99380 * 179.97438 * 8 7 6 10 10 C 1.36565 * 119.99749 * 179.97438 * 9 8 7 11 11 C 1.39826 * 119.99906 * 359.97438 * 10 9 8 12 12 C 1.47565 * 119.99887 * 179.97438 * 11 10 9 13 13 O 1.21592 * 120.00139 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99485 * 179.97438 * 12 11 10 15 15 C 1.46505 * 119.99707 * 179.97438 * 14 12 11 16 16 H 1.08996 * 112.84754 * 334.67517 * 15 14 12 17 17 C 1.53777 * 113.61068 * 105.86534 * 15 14 12 18 18 C 1.54050 * 86.98407 * 89.16343 * 17 15 14 19 19 H 1.08995 * 113.68828 * 270.86776 * 18 17 15 20 20 C 1.50699 * 113.62016 * 139.97746 * 18 17 15 21 21 C 1.38457 * 119.98943 * 142.50495 * 20 18 17 22 22 F 1.35098 * 120.01212 * 359.95497 * 21 20 18 23 23 C 1.38441 * 119.97520 * 179.97438 * 21 20 18 24 24 C 1.38397 * 119.95002 * 359.97438 * 23 21 20 25 25 F 1.35104 * 120.01406 * 179.97438 * 24 23 21 26 26 C 1.38495 * 119.97729 * 0.02562 * 24 23 21 27 27 C 1.38191 * 120.02212 * 359.74200 * 26 24 23 28 28 C 1.53772 * 87.07769 * 25.43120 * 18 17 15 29 29 C 1.39832 * 120.00187 * 359.97438 * 11 10 9 30 30 C 1.36565 * 119.99502 * 0.03738 * 29 11 10 31 31 S 1.75859 * 125.12396 * 120.27704 * 4 2 1 32 32 H 0.96704 * 114.00340 * 59.99748 * 1 2 3 33 33 H 1.08997 * 109.47528 * 119.99999 * 2 1 3 34 34 H 1.48503 * 109.99743 * 59.99925 * 3 2 1 35 35 H 1.48498 * 110.00190 * 181.32022 * 3 2 1 36 36 H 1.07999 * 122.46390 * 0.02562 * 5 4 2 37 37 H 1.07999 * 122.65118 * 179.97438 * 6 5 4 38 38 H 1.08000 * 120.00612 * 359.95982 * 9 8 7 39 39 H 1.08004 * 119.99587 * 179.72321 * 10 9 8 40 40 H 0.96998 * 120.00626 * 0.02562 * 14 12 11 41 41 H 1.08998 * 113.61660 * 203.66586 * 17 15 14 42 42 H 1.09001 * 113.61572 * 334.56818 * 17 15 14 43 43 H 1.07998 * 120.02578 * 179.97438 * 23 21 20 44 44 H 1.08001 * 119.99059 * 179.97438 * 26 24 23 45 45 H 1.08002 * 119.97489 * 180.25658 * 27 26 24 46 46 H 1.09000 * 113.61708 * 220.02678 * 28 18 17 47 47 H 1.09001 * 113.61899 * 89.11755 * 28 18 17 48 48 H 1.08000 * 120.00429 * 180.02562 * 29 11 10 49 49 H 1.07996 * 120.00194 * 179.97438 * 30 29 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.6720 -1.9846 -1.5430 6 6 2.2370 -2.4239 -2.7205 7 6 2.9657 -1.4964 -3.3770 8 6 3.6699 -1.7142 -4.6554 9 6 4.3949 -0.6716 -5.2404 10 6 5.0470 -0.8733 -6.4233 11 6 4.9901 -2.1225 -7.0489 12 6 5.6943 -2.3402 -8.3273 13 8 6.3244 -1.4334 -8.8364 14 7 5.6397 -3.5445 -8.9300 15 6 6.3384 -3.7605 -10.1995 16 1 6.4812 -2.8403 -10.7659 17 6 7.6166 -4.6045 -10.0632 18 6 6.7253 -5.8418 -10.2819 19 1 6.3109 -6.2513 -9.3608 20 6 7.3565 -6.8934 -11.1577 21 6 7.1642 -8.2353 -10.8759 22 9 6.4117 -8.6020 -9.8155 23 6 7.7437 -9.2010 -11.6810 24 6 8.5142 -8.8239 -12.7670 25 9 9.0807 -9.7653 -13.5532 26 6 8.7052 -7.4810 -13.0470 27 6 8.1223 -6.5179 -12.2455 28 6 5.7571 -4.9138 -11.0341 29 6 4.2659 -3.1654 -6.4632 30 6 3.6136 -2.9636 -5.2805 31 16 2.9523 0.0095 -2.4683 32 1 -0.3934 0.4417 -0.7650 33 1 1.7924 -0.5138 0.8899 34 1 1.5615 2.4679 1.2085 35 1 3.5346 1.7703 -0.0322 36 1 1.0638 -2.6223 -0.9187 37 1 2.1071 -3.4307 -3.0891 38 1 4.4390 0.2932 -4.7572 39 1 5.6034 -0.0666 -6.8774 40 1 5.1374 -4.2679 -8.5237 41 1 8.3371 -4.4383 -10.8640 42 1 8.0666 -4.5585 -9.0715 43 1 7.5946 -10.2480 -11.4617 44 1 9.3068 -7.1865 -13.8942 45 1 8.2683 -5.4710 -12.4670 46 1 4.7067 -5.1173 -10.8257 47 1 5.9700 -4.8319 -12.1000 48 1 4.2222 -4.1304 -6.9462 49 1 3.0539 -3.7689 -4.8282 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13428180_13308390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:31 Heat of formation + Delta-G solvation = -39.710629 kcal Electronic energy + Delta-G solvation = -35802.249893 eV Core-core repulsion = 30617.233033 eV Total energy + Delta-G solvation = -5185.016860 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 428.104 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -50.07453 -50.01309 -41.80389 -40.87222 -39.87023 -39.16464 -38.57959 -37.41548 -34.82300 -33.47051 -32.37751 -31.95794 -31.50541 -30.43457 -27.45354 -26.92548 -26.25425 -24.86292 -24.33292 -23.99257 -23.51332 -22.89382 -21.85014 -20.42254 -20.31008 -19.45328 -19.17762 -18.69375 -18.24729 -17.69995 -17.47348 -17.05293 -17.00747 -16.71081 -16.66060 -16.34831 -16.30604 -16.25584 -16.10268 -16.00441 -15.58024 -15.53405 -15.29829 -15.23980 -14.93141 -14.55414 -14.51542 -14.28551 -14.09667 -13.95642 -13.87131 -13.67529 -13.65750 -13.58654 -13.33027 -13.14783 -12.89430 -12.66405 -12.61189 -12.26074 -12.20705 -12.14104 -11.87089 -11.62647 -11.45551 -11.01660 -10.84090 -10.57351 -10.25734 -10.22271 -10.14489 -9.66509 -9.60107 -9.07962 -5.21304 -0.93150 -0.19665 -0.12116 0.21269 0.28003 0.33263 0.70573 1.16665 1.49479 1.56404 1.84317 1.95436 1.96302 2.18767 2.76524 2.79320 3.16457 3.29388 3.33686 3.35841 3.37897 3.48122 3.52619 3.58085 3.62914 3.67379 3.72350 3.75031 3.78717 3.91768 4.04916 4.11085 4.22823 4.29433 4.39006 4.44605 4.46548 4.51758 4.53771 4.61441 4.66590 4.70553 4.75765 4.81668 4.82904 4.85329 4.92344 4.94556 4.95359 5.04241 5.13546 5.17702 5.22194 5.24729 5.40795 5.45369 5.63869 5.66761 6.36567 6.40885 7.12204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.026 4.026 3 Si 0.651 3.349 4 C -0.219 4.219 5 C -0.103 4.103 6 C -0.119 4.119 7 C -0.148 4.148 8 C 0.014 3.986 9 C -0.120 4.120 10 C -0.048 4.048 11 C -0.137 4.137 12 C 0.563 3.437 13 O -0.530 6.530 14 N -0.710 5.710 15 C 0.121 3.879 16 H 0.109 0.891 17 C -0.142 4.142 18 C -0.076 4.076 19 H 0.103 0.897 20 C -0.115 4.115 21 C 0.133 3.867 22 F -0.129 7.129 23 C -0.190 4.190 24 C 0.127 3.873 25 F -0.130 7.130 26 C -0.159 4.159 27 C -0.060 4.060 28 C -0.134 4.134 29 C -0.078 4.078 30 C -0.110 4.110 31 S 0.133 5.867 32 H 0.381 0.619 33 H 0.124 0.876 34 H -0.232 1.232 35 H -0.237 1.237 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.131 0.869 39 H 0.142 0.858 40 H 0.401 0.599 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.149 0.851 44 H 0.145 0.855 45 H 0.146 0.854 46 H 0.080 0.920 47 H 0.102 0.898 48 H 0.130 0.870 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.135 0.043 -1.213 2.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.140 4.140 3 Si 0.551 3.449 4 C -0.336 4.336 5 C -0.134 4.134 6 C -0.149 4.149 7 C -0.265 4.265 8 C 0.012 3.988 9 C -0.139 4.139 10 C -0.067 4.067 11 C -0.141 4.141 12 C 0.351 3.649 13 O -0.407 6.407 14 N -0.362 5.362 15 C 0.016 3.984 16 H 0.127 0.873 17 C -0.181 4.181 18 C -0.094 4.094 19 H 0.121 0.879 20 C -0.116 4.116 21 C 0.114 3.886 22 F -0.107 7.107 23 C -0.209 4.209 24 C 0.108 3.892 25 F -0.108 7.108 26 C -0.178 4.178 27 C -0.078 4.078 28 C -0.172 4.172 29 C -0.097 4.097 30 C -0.129 4.129 31 S 0.400 5.600 32 H 0.229 0.771 33 H 0.141 0.859 34 H -0.155 1.155 35 H -0.161 1.161 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.149 0.851 39 H 0.160 0.840 40 H 0.237 0.763 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.167 0.833 44 H 0.163 0.837 45 H 0.163 0.837 46 H 0.098 0.902 47 H 0.120 0.880 48 H 0.147 0.853 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.477 2.411 -0.758 2.572 hybrid contribution -0.821 -2.952 0.610 3.124 sum -1.298 -0.540 -0.148 1.414 Atomic orbital electron populations 1.86527 1.16550 1.81672 1.49200 1.24410 0.85218 1.09129 0.95195 0.95006 0.82273 0.77814 0.89839 1.25095 1.06947 0.99156 1.02434 1.20003 1.01146 0.94806 0.97410 1.20397 0.98634 1.00562 0.95356 1.23081 1.05965 0.98107 0.99373 1.18302 0.95213 0.94090 0.91218 1.20979 0.97985 0.98747 0.96171 1.20946 0.95923 0.96260 0.93551 1.19981 1.02221 0.95626 0.96226 1.18205 0.80162 0.82204 0.84295 1.90813 1.42226 1.42290 1.65389 1.45590 1.53528 1.13429 1.23689 1.21837 0.92596 0.99074 0.84935 0.87285 1.23633 0.96850 0.93871 1.03736 1.21611 0.97347 0.92358 0.98084 0.87858 1.19797 1.01167 0.92241 0.98373 1.17140 0.93543 0.92036 0.85921 1.91526 1.73414 1.92232 1.53552 1.21081 1.01901 1.01335 0.96628 1.17343 0.95437 0.86162 0.90267 1.91562 1.82624 1.64098 1.72558 1.21263 1.03182 0.90824 1.02499 1.20781 0.94365 1.00223 0.92416 1.23442 0.99663 0.93964 1.00153 1.20959 0.95377 0.98121 0.95207 1.20870 1.00244 0.96363 0.95469 1.84154 1.48631 1.12907 1.14300 0.77110 0.85898 1.15513 1.16129 0.83649 0.83746 0.85116 0.84017 0.76302 0.88363 0.90326 0.83310 0.83735 0.83654 0.90156 0.87980 0.85250 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.22 12.86 -35.23 -0.45 -0.24 16 2 C -0.03 0.02 2.96 36.01 0.11 0.13 16 3 Si 0.65 -0.74 30.96 -169.99 -5.26 -6.00 16 4 C -0.22 0.07 5.73 -35.89 -0.21 -0.14 16 5 C -0.10 0.03 10.00 -41.32 -0.41 -0.39 16 6 C -0.12 0.06 9.64 -40.90 -0.39 -0.33 16 7 C -0.15 -0.01 6.37 -36.93 -0.24 -0.25 16 8 C 0.01 0.00 5.88 -104.91 -0.62 -0.62 16 9 C -0.12 -0.02 9.54 -39.59 -0.38 -0.40 16 10 C -0.05 -0.04 9.53 -39.59 -0.38 -0.42 16 11 C -0.14 -0.06 5.88 -104.90 -0.62 -0.68 16 12 C 0.56 0.90 7.76 -12.45 -0.10 0.80 16 13 O -0.53 -2.78 15.95 5.28 0.08 -2.70 16 14 N -0.71 0.95 5.21 -54.05 -0.28 0.67 16 15 C 0.12 -0.20 4.30 -67.12 -0.29 -0.49 16 16 H 0.11 -0.03 7.50 -51.93 -0.39 -0.42 16 17 C -0.14 0.31 7.27 -25.78 -0.19 0.12 16 18 C -0.08 0.18 3.79 -90.82 -0.34 -0.16 16 19 H 0.10 -0.24 7.44 -51.93 -0.39 -0.63 16 20 C -0.11 0.14 5.30 -104.54 -0.55 -0.41 16 21 C 0.13 0.02 7.24 -39.43 -0.29 -0.26 16 22 F -0.13 -0.12 16.36 2.25 0.04 -0.09 16 23 C -0.19 -0.03 10.01 -39.45 -0.39 -0.43 16 24 C 0.13 0.05 7.30 -39.43 -0.29 -0.24 16 25 F -0.13 -0.22 17.27 2.25 0.04 -0.19 16 26 C -0.16 0.21 10.03 -39.50 -0.40 -0.19 16 27 C -0.06 0.13 8.59 -39.60 -0.34 -0.21 16 28 C -0.13 0.42 7.29 -25.93 -0.19 0.23 16 29 C -0.08 0.12 9.48 -39.59 -0.38 -0.25 16 30 C -0.11 0.14 9.48 -39.59 -0.38 -0.24 16 31 S 0.13 -0.05 19.46 -107.50 -2.09 -2.14 16 32 H 0.38 -1.56 8.70 45.56 0.40 -1.16 16 33 H 0.12 -0.08 7.96 -51.93 -0.41 -0.49 16 34 H -0.23 -0.34 7.11 56.52 0.40 0.06 16 35 H -0.24 -0.24 7.11 56.52 0.40 0.16 16 36 H 0.15 -0.15 8.06 -52.49 -0.42 -0.57 16 37 H 0.14 -0.35 6.88 -52.49 -0.36 -0.71 16 38 H 0.13 -0.14 7.26 -52.49 -0.38 -0.52 16 39 H 0.14 0.12 7.64 -52.48 -0.40 -0.28 16 40 H 0.40 -1.48 6.71 -40.82 -0.27 -1.75 16 41 H 0.10 -0.30 6.33 -51.93 -0.33 -0.63 16 42 H 0.08 -0.08 8.14 -51.93 -0.42 -0.51 16 43 H 0.15 -0.12 8.06 -52.49 -0.42 -0.55 16 44 H 0.14 -0.42 8.06 -52.49 -0.42 -0.85 16 45 H 0.15 -0.64 6.67 -52.49 -0.35 -0.99 16 46 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 47 H 0.10 -0.39 7.71 -51.93 -0.40 -0.79 16 48 H 0.13 -0.57 6.38 -52.49 -0.34 -0.91 16 49 H 0.13 -0.43 6.74 -52.49 -0.35 -0.79 16 LS Contribution 430.03 15.07 6.48 6.48 Total: 0.00 -8.05 430.03 -13.98 -22.03 By element: Atomic # 1 Polarization: -7.73 SS G_CDS: -5.29 Total: -13.02 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -7.24 Total: -4.81 kcal Atomic # 7 Polarization: 0.95 SS G_CDS: -0.28 Total: 0.67 kcal Atomic # 8 Polarization: -2.56 SS G_CDS: -0.37 Total: -2.93 kcal Atomic # 9 Polarization: -0.35 SS G_CDS: 0.08 Total: -0.27 kcal Atomic # 14 Polarization: -0.74 SS G_CDS: -5.26 Total: -6.00 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -2.09 Total: -2.14 kcal Total LS contribution 6.48 Total: 6.48 kcal Total: -8.05 -13.98 -22.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_13308390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.679 kcal (2) G-P(sol) polarization free energy of solvation -8.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds