Wall clock time and date at job start Sun Mar 7 2021 00:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86303 * 109.47238 * 2 1 4 4 C 1.50699 * 109.47115 * 240.00656 * 2 1 3 5 5 C 1.33743 * 125.11318 * 299.99776 * 4 2 1 6 6 C 1.37802 * 115.08149 * 179.97438 * 5 4 2 7 7 C 1.34986 * 114.69744 * 359.97438 * 6 5 4 8 8 C 1.47565 * 125.27260 * 180.02562 * 7 6 5 9 9 C 1.39819 * 119.99380 * 179.97438 * 8 7 6 10 10 C 1.36565 * 119.99749 * 179.97438 * 9 8 7 11 11 C 1.39826 * 119.99906 * 359.97438 * 10 9 8 12 12 C 1.47565 * 119.99887 * 179.97438 * 11 10 9 13 13 O 1.21592 * 120.00139 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99485 * 179.97438 * 12 11 10 15 15 C 1.46505 * 119.99707 * 179.97438 * 14 12 11 16 16 H 1.08996 * 112.84754 * 334.67517 * 15 14 12 17 17 C 1.53777 * 113.61068 * 105.86534 * 15 14 12 18 18 C 1.54050 * 86.98407 * 89.16343 * 17 15 14 19 19 H 1.08995 * 113.68828 * 270.86776 * 18 17 15 20 20 C 1.50699 * 113.62016 * 139.97746 * 18 17 15 21 21 C 1.38457 * 119.98943 * 142.50495 * 20 18 17 22 22 F 1.35098 * 120.01212 * 359.95497 * 21 20 18 23 23 C 1.38441 * 119.97520 * 179.97438 * 21 20 18 24 24 C 1.38397 * 119.95002 * 359.97438 * 23 21 20 25 25 F 1.35104 * 120.01406 * 179.97438 * 24 23 21 26 26 C 1.38495 * 119.97729 * 0.02562 * 24 23 21 27 27 C 1.38191 * 120.02212 * 359.74200 * 26 24 23 28 28 C 1.53772 * 87.07769 * 25.43120 * 18 17 15 29 29 C 1.39832 * 120.00187 * 359.97438 * 11 10 9 30 30 C 1.36565 * 119.99502 * 0.03738 * 29 11 10 31 31 S 1.75859 * 125.12396 * 120.27704 * 4 2 1 32 32 H 0.96704 * 114.00340 * 59.99748 * 1 2 3 33 33 H 1.08997 * 109.47528 * 119.99999 * 2 1 3 34 34 H 1.48503 * 109.99743 * 59.99925 * 3 2 1 35 35 H 1.48498 * 110.00190 * 181.32022 * 3 2 1 36 36 H 1.07999 * 122.46390 * 0.02562 * 5 4 2 37 37 H 1.07999 * 122.65118 * 179.97438 * 6 5 4 38 38 H 1.08000 * 120.00612 * 359.95982 * 9 8 7 39 39 H 1.08004 * 119.99587 * 179.72321 * 10 9 8 40 40 H 0.96998 * 120.00626 * 0.02562 * 14 12 11 41 41 H 1.08998 * 113.61660 * 203.66586 * 17 15 14 42 42 H 1.09001 * 113.61572 * 334.56818 * 17 15 14 43 43 H 1.07998 * 120.02578 * 179.97438 * 23 21 20 44 44 H 1.08001 * 119.99059 * 179.97438 * 26 24 23 45 45 H 1.08002 * 119.97489 * 180.25658 * 27 26 24 46 46 H 1.09000 * 113.61708 * 220.02678 * 28 18 17 47 47 H 1.09001 * 113.61899 * 89.11755 * 28 18 17 48 48 H 1.08000 * 120.00429 * 180.02562 * 29 11 10 49 49 H 1.07996 * 120.00194 * 179.97438 * 30 29 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.6720 -1.9846 -1.5430 6 6 2.2370 -2.4239 -2.7205 7 6 2.9657 -1.4964 -3.3770 8 6 3.6699 -1.7142 -4.6554 9 6 4.3949 -0.6716 -5.2404 10 6 5.0470 -0.8733 -6.4233 11 6 4.9901 -2.1225 -7.0489 12 6 5.6943 -2.3402 -8.3273 13 8 6.3244 -1.4334 -8.8364 14 7 5.6397 -3.5445 -8.9300 15 6 6.3384 -3.7605 -10.1995 16 1 6.4812 -2.8403 -10.7659 17 6 7.6166 -4.6045 -10.0632 18 6 6.7253 -5.8418 -10.2819 19 1 6.3109 -6.2513 -9.3608 20 6 7.3565 -6.8934 -11.1577 21 6 7.1642 -8.2353 -10.8759 22 9 6.4117 -8.6020 -9.8155 23 6 7.7437 -9.2010 -11.6810 24 6 8.5142 -8.8239 -12.7670 25 9 9.0807 -9.7653 -13.5532 26 6 8.7052 -7.4810 -13.0470 27 6 8.1223 -6.5179 -12.2455 28 6 5.7571 -4.9138 -11.0341 29 6 4.2659 -3.1654 -6.4632 30 6 3.6136 -2.9636 -5.2805 31 16 2.9523 0.0095 -2.4683 32 1 -0.3934 0.4417 -0.7650 33 1 1.7924 -0.5138 0.8899 34 1 1.5615 2.4679 1.2085 35 1 3.5346 1.7703 -0.0322 36 1 1.0638 -2.6223 -0.9187 37 1 2.1071 -3.4307 -3.0891 38 1 4.4390 0.2932 -4.7572 39 1 5.6034 -0.0666 -6.8774 40 1 5.1374 -4.2679 -8.5237 41 1 8.3371 -4.4383 -10.8640 42 1 8.0666 -4.5585 -9.0715 43 1 7.5946 -10.2480 -11.4617 44 1 9.3068 -7.1865 -13.8942 45 1 8.2683 -5.4710 -12.4670 46 1 4.7067 -5.1173 -10.8257 47 1 5.9700 -4.8319 -12.1000 48 1 4.2222 -4.1304 -6.9462 49 1 3.0539 -3.7689 -4.8282 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_13308390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:30 Heat of formation + Delta-G solvation = -32.607978 kcal Electronic energy + Delta-G solvation = -35801.941899 eV Core-core repulsion = 30617.233033 eV Total energy + Delta-G solvation = -5184.708866 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 428.104 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -50.06982 -50.04182 -41.75226 -40.78891 -39.84000 -39.08959 -38.55533 -37.35634 -34.84067 -33.41292 -32.30348 -31.86275 -31.42423 -30.37668 -27.40467 -26.72312 -26.15224 -24.79919 -24.24570 -23.92815 -23.45011 -22.81204 -21.83304 -20.32193 -20.24361 -19.40629 -19.11736 -18.65398 -18.19823 -17.64361 -17.40872 -17.04735 -16.92129 -16.67640 -16.60342 -16.37260 -16.24067 -16.18797 -16.08115 -16.01155 -15.55036 -15.50484 -15.19676 -15.16722 -14.87676 -14.47926 -14.45515 -14.28817 -13.98958 -13.89477 -13.74287 -13.60885 -13.56169 -13.45576 -13.27940 -13.09253 -12.82900 -12.59097 -12.55786 -12.28732 -12.06771 -12.05417 -11.73794 -11.57483 -11.30588 -11.13390 -10.81309 -10.53434 -10.18731 -10.16348 -10.07810 -9.59399 -9.55107 -9.03064 -5.16092 -0.88992 -0.12446 -0.03042 0.25329 0.34295 0.38381 0.76210 1.21950 1.52307 1.58791 1.84922 1.95721 2.01902 2.28379 2.82499 2.82911 3.29845 3.39488 3.44773 3.44826 3.49388 3.63172 3.66814 3.69100 3.72959 3.75852 3.84784 3.87608 3.94049 4.08198 4.17184 4.20813 4.31687 4.36871 4.46710 4.55506 4.60259 4.62238 4.70944 4.74948 4.83229 4.85113 4.90799 4.91597 4.92705 5.01057 5.01682 5.08229 5.10280 5.12179 5.22520 5.27101 5.29173 5.32502 5.48271 5.56777 5.72900 5.73762 6.43508 6.66398 7.11435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.025 4.025 3 Si 0.717 3.283 4 C -0.221 4.221 5 C -0.110 4.110 6 C -0.117 4.117 7 C -0.159 4.159 8 C 0.006 3.994 9 C -0.128 4.128 10 C -0.063 4.063 11 C -0.151 4.151 12 C 0.561 3.439 13 O -0.577 6.577 14 N -0.696 5.696 15 C 0.114 3.886 16 H 0.094 0.906 17 C -0.139 4.139 18 C -0.072 4.072 19 H 0.104 0.896 20 C -0.111 4.111 21 C 0.117 3.883 22 F -0.137 7.137 23 C -0.199 4.199 24 C 0.107 3.893 25 F -0.143 7.143 26 C -0.155 4.155 27 C -0.056 4.056 28 C -0.122 4.122 29 C -0.069 4.069 30 C -0.109 4.109 31 S 0.124 5.876 32 H 0.397 0.603 33 H 0.122 0.878 34 H -0.269 1.269 35 H -0.268 1.268 36 H 0.153 0.847 37 H 0.166 0.834 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.414 0.586 41 H 0.110 0.890 42 H 0.067 0.933 43 H 0.150 0.850 44 H 0.162 0.838 45 H 0.172 0.828 46 H 0.087 0.913 47 H 0.113 0.887 48 H 0.161 0.839 49 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.008 -0.933 -1.605 3.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.138 4.138 3 Si 0.620 3.380 4 C -0.339 4.339 5 C -0.140 4.140 6 C -0.147 4.147 7 C -0.276 4.276 8 C 0.004 3.996 9 C -0.147 4.147 10 C -0.082 4.082 11 C -0.154 4.154 12 C 0.350 3.650 13 O -0.457 6.457 14 N -0.348 5.348 15 C 0.009 3.991 16 H 0.112 0.888 17 C -0.177 4.177 18 C -0.090 4.090 19 H 0.122 0.878 20 C -0.112 4.112 21 C 0.097 3.903 22 F -0.115 7.115 23 C -0.218 4.218 24 C 0.087 3.913 25 F -0.121 7.121 26 C -0.174 4.174 27 C -0.073 4.073 28 C -0.159 4.159 29 C -0.087 4.087 30 C -0.129 4.129 31 S 0.391 5.609 32 H 0.247 0.753 33 H 0.139 0.861 34 H -0.194 1.194 35 H -0.194 1.194 36 H 0.171 0.829 37 H 0.183 0.817 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.252 0.748 41 H 0.128 0.872 42 H 0.085 0.915 43 H 0.168 0.832 44 H 0.179 0.821 45 H 0.189 0.811 46 H 0.106 0.894 47 H 0.132 0.868 48 H 0.178 0.822 49 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.378 1.395 -1.169 2.283 hybrid contribution -0.549 -2.639 0.768 2.803 sum -1.927 -1.244 -0.400 2.328 Atomic orbital electron populations 1.86491 1.16522 1.82054 1.50411 1.24405 0.85302 1.09062 0.95066 0.94185 0.79502 0.76396 0.87869 1.25164 1.06921 0.99379 1.02425 1.20180 1.01274 0.94867 0.97710 1.20635 0.97811 1.01342 0.94958 1.23172 1.06571 0.98258 0.99617 1.18463 0.95147 0.94634 0.91342 1.21038 0.98271 0.99302 0.96082 1.20954 0.96533 0.96558 0.94111 1.20020 1.03085 0.96198 0.96096 1.18429 0.79666 0.82389 0.84529 1.90784 1.44422 1.43861 1.66653 1.45508 1.52878 1.12878 1.23548 1.21901 0.93402 0.98979 0.84867 0.88787 1.23642 0.96813 0.93690 1.03598 1.21598 0.97402 0.91895 0.98109 0.87764 1.19971 1.00847 0.91831 0.98566 1.17301 0.94206 0.92694 0.86083 1.91500 1.73703 1.92387 1.53927 1.21166 1.02125 1.01678 0.96847 1.17576 0.96317 0.86735 0.90643 1.91526 1.82966 1.64708 1.72935 1.21519 1.02814 0.90148 1.02892 1.21076 0.93371 1.01303 0.91585 1.23415 0.99856 0.92236 1.00433 1.21247 0.93909 0.98640 0.94904 1.21183 0.99988 0.96400 0.95332 1.84180 1.48834 1.13341 1.14554 0.75317 0.86061 1.19408 1.19372 0.82920 0.81690 0.84773 0.85135 0.74772 0.87176 0.91452 0.83188 0.82080 0.81109 0.89391 0.86825 0.82202 0.82356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.69 12.86 -148.98 -1.92 -1.22 16 2 C -0.02 0.04 2.96 71.24 0.21 0.25 16 3 Si 0.72 -1.13 30.96 68.60 2.12 0.99 16 4 C -0.22 0.20 5.73 24.66 0.14 0.34 16 5 C -0.11 0.16 10.00 21.15 0.21 0.37 16 6 C -0.12 0.28 9.64 21.42 0.21 0.48 16 7 C -0.16 0.05 6.37 23.98 0.15 0.20 16 8 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 9 C -0.13 -0.16 9.54 22.26 0.21 0.05 16 10 C -0.06 -0.20 9.53 22.26 0.21 0.02 16 11 C -0.15 -0.20 5.88 -20.05 -0.12 -0.31 16 12 C 0.56 2.18 7.76 86.70 0.67 2.85 16 13 O -0.58 -7.10 15.95 -4.01 -0.06 -7.17 16 14 N -0.70 2.18 5.21 -443.17 -2.31 -0.13 16 15 C 0.11 -0.44 4.30 45.51 0.20 -0.24 16 16 H 0.09 -0.02 7.50 -2.39 -0.02 -0.04 16 17 C -0.14 0.72 7.27 31.21 0.23 0.94 16 18 C -0.07 0.44 3.79 -10.92 -0.04 0.39 16 19 H 0.10 -0.62 7.44 -2.39 -0.02 -0.64 16 20 C -0.11 0.39 5.30 -19.81 -0.10 0.29 16 21 C 0.12 0.03 7.24 22.37 0.16 0.19 16 22 F -0.14 -0.27 16.36 44.97 0.74 0.47 16 23 C -0.20 -0.18 10.01 22.36 0.22 0.04 16 24 C 0.11 0.10 7.30 22.37 0.16 0.27 16 25 F -0.14 -0.60 17.27 44.97 0.78 0.18 16 26 C -0.16 0.55 10.03 22.32 0.22 0.77 16 27 C -0.06 0.33 8.59 22.26 0.19 0.52 16 28 C -0.12 0.96 7.29 31.12 0.23 1.19 16 29 C -0.07 0.31 9.48 22.26 0.21 0.52 16 30 C -0.11 0.45 9.48 22.26 0.21 0.66 16 31 S 0.12 -0.06 19.46 -56.49 -1.10 -1.16 16 32 H 0.40 -3.50 8.70 -74.05 -0.64 -4.15 16 33 H 0.12 -0.15 7.96 -2.39 -0.02 -0.17 16 34 H -0.27 -1.17 7.11 99.48 0.71 -0.46 16 35 H -0.27 -0.89 7.11 99.48 0.71 -0.18 16 36 H 0.15 -0.48 8.06 -2.91 -0.02 -0.50 16 37 H 0.17 -1.19 6.88 -2.91 -0.02 -1.21 16 38 H 0.13 -0.08 7.26 -2.91 -0.02 -0.10 16 39 H 0.13 0.59 7.64 -2.91 -0.02 0.56 16 40 H 0.41 -3.65 6.71 -92.71 -0.62 -4.28 16 41 H 0.11 -0.84 6.33 -2.39 -0.02 -0.85 16 42 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 43 H 0.15 -0.07 8.06 -2.91 -0.02 -0.10 16 44 H 0.16 -1.17 8.06 -2.91 -0.02 -1.19 16 45 H 0.17 -1.93 6.67 -2.91 -0.02 -1.95 16 46 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 47 H 0.11 -1.11 7.71 -2.39 -0.02 -1.13 16 48 H 0.16 -1.83 6.38 -2.91 -0.02 -1.85 16 49 H 0.16 -1.47 6.74 -2.91 -0.02 -1.49 16 Total: 0.00 -20.82 430.03 1.75 -19.07 By element: Atomic # 1 Polarization: -20.53 SS G_CDS: -0.17 Total: -20.70 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 3.67 Total: 9.67 kcal Atomic # 7 Polarization: 2.18 SS G_CDS: -2.31 Total: -0.13 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -1.98 Total: -8.39 kcal Atomic # 9 Polarization: -0.86 SS G_CDS: 1.51 Total: 0.65 kcal Atomic # 14 Polarization: -1.13 SS G_CDS: 2.12 Total: 0.99 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -1.10 Total: -1.16 kcal Total: -20.82 1.75 -19.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_13308390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.542 kcal (2) G-P(sol) polarization free energy of solvation -20.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds