Wall clock time and date at job start Sun Mar 7 2021 00:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50693 * 109.47661 * 239.99225 * 2 1 3 5 5 C 1.38504 * 119.80189 * 119.72674 * 4 2 1 6 6 C 1.37836 * 120.29454 * 179.72542 * 5 4 2 7 7 C 1.39667 * 119.90960 * 0.55197 * 6 5 4 8 8 C 1.47539 * 120.18951 * 179.70767 * 7 6 5 9 9 O 1.21590 * 119.99461 * 180.02562 * 8 7 6 10 10 N 1.34770 * 120.00339 * 0.02562 * 8 7 6 11 11 C 1.46496 * 120.00314 * 180.02562 * 10 8 7 12 12 H 1.09004 * 112.84823 * 23.80714 * 11 10 8 13 13 C 1.53778 * 113.61667 * 154.99746 * 11 10 8 14 14 C 1.53787 * 87.08037 * 89.11874 * 13 11 10 15 15 H 1.09004 * 113.61177 * 270.79789 * 14 13 11 16 16 C 1.50694 * 113.61413 * 139.98055 * 14 13 11 17 17 C 1.38461 * 119.98659 * 119.72648 * 16 14 13 18 18 F 1.35097 * 120.01085 * 0.02562 * 17 16 14 19 19 C 1.38447 * 119.97370 * 179.76782 * 17 16 14 20 20 C 1.38393 * 119.94783 * 0.48095 * 19 17 16 21 21 F 1.35104 * 120.00951 * 179.78938 * 20 19 17 22 22 C 1.38499 * 119.97832 * 359.77707 * 20 19 17 23 23 C 1.38184 * 120.02356 * 359.97438 * 22 20 19 24 24 C 1.53777 * 87.07838 * 25.43330 * 14 13 11 25 25 C 1.40170 * 119.61851 * 359.72274 * 7 6 5 26 26 O 1.35659 * 120.15439 * 180.02562 * 25 7 6 27 27 C 1.38100 * 119.80637 * 300.00577 * 4 2 1 28 28 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 29 29 H 1.09000 * 109.46638 * 119.99419 * 2 1 3 30 30 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 31 31 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 32 32 H 1.07994 * 119.85114 * 359.97438 * 5 4 2 33 33 H 1.08004 * 120.04432 * 180.25782 * 6 5 4 34 34 H 0.97006 * 119.99996 * 0.02562 * 10 8 7 35 35 H 1.08999 * 113.61708 * 203.66638 * 13 11 10 36 36 H 1.09003 * 113.61414 * 334.48990 * 13 11 10 37 37 H 1.07992 * 120.02031 * 180.25253 * 19 17 16 38 38 H 1.07998 * 119.99012 * 179.97438 * 22 20 19 39 39 H 1.07998 * 119.97277 * 180.02562 * 23 22 20 40 40 H 1.09006 * 113.61464 * 220.01868 * 24 14 13 41 41 H 1.08999 * 113.61471 * 89.11731 * 24 14 13 42 42 H 0.96704 * 113.99567 * 269.98112 * 26 25 7 43 43 H 1.08002 * 119.95770 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7105 -1.2303 5 6 2.7229 -0.0319 -2.1422 6 6 3.1927 -0.6735 -3.2680 7 6 2.8604 -2.0106 -3.4973 8 6 3.3545 -2.7015 -4.7037 9 8 3.0627 -3.8654 -4.9000 10 7 4.1293 -2.0425 -5.5879 11 6 4.6195 -2.7284 -6.7860 12 1 3.9975 -3.5765 -7.0725 13 6 4.9403 -1.7783 -7.9519 14 6 6.3593 -1.6691 -7.3690 15 1 6.4706 -0.8682 -6.6381 16 6 7.4430 -1.6605 -8.4161 17 6 8.2939 -0.5735 -8.5224 18 9 8.1531 0.4791 -7.6873 19 6 9.2925 -0.5679 -9.4814 20 6 9.4325 -1.6448 -10.3392 21 9 10.4039 -1.6388 -11.2782 22 6 8.5768 -2.7288 -10.2346 23 6 7.5837 -2.7355 -9.2737 24 6 6.1221 -3.0519 -6.7393 25 6 2.0546 -2.6921 -2.5749 26 8 1.7256 -3.9911 -2.7866 27 6 1.5954 -2.0327 -1.4447 28 1 -0.3934 0.4417 0.7649 29 1 1.7923 -0.5138 0.8901 30 1 3.5346 1.7703 0.0322 31 1 1.5616 2.4678 -1.2086 32 1 2.9763 1.0034 -1.9682 33 1 3.8129 -0.1416 -3.9743 34 1 4.3624 -1.1140 -5.4311 35 1 4.9057 -2.2594 -8.9294 36 1 4.3807 -0.8435 -7.9200 37 1 9.9592 0.2778 -9.5623 38 1 8.6857 -3.5691 -10.9042 39 1 6.9172 -3.5813 -9.1926 40 1 6.5176 -3.1447 -5.7278 41 1 6.4105 -3.8811 -7.3853 42 1 0.9088 -4.1130 -3.2897 43 1 0.9738 -2.5537 -0.7316 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13428180_13422076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:36 Heat of formation + Delta-G solvation = -108.352990 kcal Electronic energy + Delta-G solvation = -31062.556268 eV Core-core repulsion = 26290.708213 eV Total energy + Delta-G solvation = -4771.848055 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.116 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -50.07768 -50.01451 -41.90157 -41.11736 -39.83258 -38.75835 -38.22114 -37.25951 -34.70628 -32.93378 -31.95326 -31.39712 -31.18224 -27.73831 -26.91921 -26.19714 -24.44290 -23.95893 -23.61223 -22.84953 -21.76194 -20.41067 -19.48746 -19.21181 -18.74976 -18.55803 -18.25363 -17.71297 -17.24852 -17.05205 -16.86085 -16.70910 -16.43314 -16.35033 -16.27464 -15.94087 -15.56203 -15.53255 -15.37187 -15.27818 -15.19251 -14.52614 -14.19741 -14.11737 -13.99727 -13.87967 -13.66758 -13.58644 -13.35909 -12.98476 -12.87237 -12.66273 -12.56449 -12.19956 -12.13310 -11.86156 -11.79612 -11.44841 -10.82710 -10.55429 -10.23166 -10.16690 -10.05492 -9.83101 -9.66459 -5.08764 -0.45358 -0.19755 -0.12262 0.05300 1.12340 1.51254 1.71288 1.83325 1.95105 2.18610 2.50455 2.76335 3.06711 3.15265 3.17387 3.33668 3.37153 3.46308 3.50220 3.53194 3.62235 3.64823 3.72639 3.78992 3.91357 3.97160 4.04945 4.14993 4.17261 4.44784 4.50102 4.51854 4.60264 4.65235 4.66647 4.70526 4.75894 4.81599 4.85883 4.88621 4.93335 4.95258 5.07718 5.14536 5.15717 5.45780 5.47948 5.63729 6.37318 6.46293 6.67660 7.15815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.079 4.079 3 Si 0.688 3.312 4 C -0.030 4.030 5 C -0.143 4.143 6 C -0.063 4.063 7 C -0.166 4.166 8 C 0.564 3.436 9 O -0.514 6.514 10 N -0.713 5.713 11 C 0.122 3.878 12 H 0.110 0.890 13 C -0.135 4.135 14 C -0.076 4.076 15 H 0.103 0.897 16 C -0.115 4.115 17 C 0.133 3.867 18 F -0.129 7.129 19 C -0.190 4.190 20 C 0.127 3.873 21 F -0.130 7.130 22 C -0.159 4.159 23 C -0.060 4.060 24 C -0.143 4.143 25 C 0.176 3.824 26 O -0.475 6.475 27 C -0.125 4.125 28 H 0.386 0.614 29 H 0.081 0.919 30 H -0.253 1.253 31 H -0.248 1.248 32 H 0.127 0.873 33 H 0.133 0.867 34 H 0.399 0.601 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.399 0.601 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.979 3.626 2.489 4.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.189 4.189 3 Si 0.588 3.412 4 C -0.030 4.030 5 C -0.160 4.160 6 C -0.081 4.081 7 C -0.170 4.170 8 C 0.351 3.649 9 O -0.389 6.389 10 N -0.365 5.365 11 C 0.017 3.983 12 H 0.128 0.872 13 C -0.173 4.173 14 C -0.094 4.094 15 H 0.121 0.879 16 C -0.116 4.116 17 C 0.113 3.887 18 F -0.107 7.107 19 C -0.209 4.209 20 C 0.108 3.892 21 F -0.108 7.108 22 C -0.177 4.177 23 C -0.078 4.078 24 C -0.181 4.181 25 C 0.129 3.871 26 O -0.286 6.286 27 C -0.144 4.144 28 H 0.234 0.766 29 H 0.099 0.901 30 H -0.178 1.178 31 H -0.173 1.173 32 H 0.145 0.855 33 H 0.151 0.849 34 H 0.235 0.765 35 H 0.120 0.880 36 H 0.098 0.902 37 H 0.167 0.833 38 H 0.163 0.837 39 H 0.163 0.837 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.258 0.742 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.089 2.967 1.657 3.568 hybrid contribution 0.170 0.359 -0.384 0.553 sum -0.918 3.326 1.273 3.678 Atomic orbital electron populations 1.86478 1.16778 1.81936 1.49895 1.24783 0.86111 1.10785 0.97249 0.95077 0.80752 0.77696 0.87658 1.19440 0.95455 0.93621 0.94528 1.20800 1.00585 0.99557 0.95101 1.21083 0.97542 0.92759 0.96755 1.20373 1.04980 0.94717 0.96907 1.17995 0.78227 0.86278 0.82374 1.90836 1.56908 1.15678 1.75513 1.45592 1.52460 1.15522 1.22958 1.21821 0.95268 0.96530 0.84703 0.87213 1.23455 0.94665 1.00621 0.98523 1.21561 0.92310 0.99681 0.95852 0.87925 1.19797 0.98167 0.93948 0.99660 1.17145 0.96115 0.85046 0.90359 1.91525 1.95057 1.54840 1.69325 1.21079 1.01395 1.00844 0.97617 1.17339 0.88233 0.95065 0.88561 1.91562 1.60312 1.96624 1.62331 1.21261 0.96408 0.98735 1.01345 1.20779 0.96813 0.97552 0.92636 1.23589 0.96024 0.96221 1.02278 1.18474 0.93252 0.83616 0.91737 1.84756 1.47434 1.19339 1.77110 1.21327 1.00714 0.93871 0.98443 0.76635 0.90132 1.17763 1.17289 0.85550 0.84890 0.76497 0.87989 0.90222 0.83300 0.83717 0.83653 0.90350 0.88332 0.74226 0.83928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.54 12.74 -35.23 -0.45 0.09 16 2 C -0.08 0.09 2.80 36.00 0.10 0.19 16 3 Si 0.69 -1.57 29.77 -169.99 -5.06 -6.63 16 4 C -0.03 -0.04 5.43 -104.58 -0.57 -0.60 16 5 C -0.14 -0.11 8.65 -39.63 -0.34 -0.45 16 6 C -0.06 -0.01 9.54 -39.20 -0.37 -0.38 16 7 C -0.17 -0.35 5.89 -104.85 -0.62 -0.96 16 8 C 0.56 1.56 7.76 -12.47 -0.10 1.46 16 9 O -0.51 -3.12 14.76 -16.59 -0.24 -3.37 16 10 N -0.71 0.25 5.21 -54.06 -0.28 -0.03 16 11 C 0.12 -0.12 4.32 -67.12 -0.29 -0.41 16 12 H 0.11 0.04 7.46 -51.93 -0.39 -0.35 16 13 C -0.13 0.34 7.29 -25.92 -0.19 0.15 16 14 C -0.08 0.14 3.78 -90.96 -0.34 -0.21 16 15 H 0.10 -0.17 7.45 -51.93 -0.39 -0.56 16 16 C -0.11 0.09 5.29 -104.55 -0.55 -0.47 16 17 C 0.13 0.08 7.25 -39.42 -0.29 -0.21 16 18 F -0.13 -0.19 16.36 2.25 0.04 -0.15 16 19 C -0.19 -0.10 10.01 -39.45 -0.39 -0.49 16 20 C 0.13 0.09 7.30 -39.43 -0.29 -0.20 16 21 F -0.13 -0.26 17.27 2.25 0.04 -0.22 16 22 C -0.16 0.15 10.03 -39.50 -0.40 -0.24 16 23 C -0.06 0.11 8.61 -39.60 -0.34 -0.23 16 24 C -0.14 0.21 7.25 -25.92 -0.19 0.02 16 25 C 0.18 0.48 6.72 -38.70 -0.26 0.22 16 26 O -0.47 -1.50 11.58 -40.55 -0.47 -1.97 16 27 C -0.13 -0.22 9.53 -39.47 -0.38 -0.60 16 28 H 0.39 -2.29 8.74 45.56 0.40 -1.89 16 29 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 30 H -0.25 -0.01 7.11 56.52 0.40 0.39 16 31 H -0.25 -0.17 7.11 56.52 0.40 0.23 16 32 H 0.13 -0.02 4.85 -52.49 -0.25 -0.28 16 33 H 0.13 -0.38 6.40 -52.48 -0.34 -0.72 16 34 H 0.40 -1.04 6.73 -40.82 -0.27 -1.31 16 35 H 0.10 -0.33 7.72 -51.93 -0.40 -0.73 16 36 H 0.08 -0.21 8.14 -51.93 -0.42 -0.64 16 37 H 0.15 -0.08 8.06 -52.49 -0.42 -0.50 16 38 H 0.15 -0.38 8.06 -52.49 -0.42 -0.80 16 39 H 0.15 -0.57 6.65 -52.49 -0.35 -0.92 16 40 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 41 H 0.10 -0.25 6.31 -51.93 -0.33 -0.57 16 42 H 0.40 -0.23 9.06 45.56 0.41 0.18 16 43 H 0.14 0.13 8.06 -52.49 -0.42 -0.29 16 LS Contribution 369.13 15.07 5.56 5.56 Total: 0.00 -9.65 369.13 -10.30 -19.95 By element: Atomic # 1 Polarization: -6.21 SS G_CDS: -3.63 Total: -9.84 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -5.80 Total: -3.41 kcal Atomic # 7 Polarization: 0.25 SS G_CDS: -0.28 Total: -0.03 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -1.16 Total: -5.24 kcal Atomic # 9 Polarization: -0.44 SS G_CDS: 0.08 Total: -0.37 kcal Atomic # 14 Polarization: -1.57 SS G_CDS: -5.06 Total: -6.63 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -9.65 -10.30 -19.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_13422076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.402 kcal (2) G-P(sol) polarization free energy of solvation -9.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds