Wall clock time and date at job start Sun Mar 7 2021 00:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50693 * 109.47661 * 239.99225 * 2 1 3 5 5 C 1.38504 * 119.80189 * 119.72674 * 4 2 1 6 6 C 1.37836 * 120.29454 * 179.72542 * 5 4 2 7 7 C 1.39667 * 119.90960 * 0.55197 * 6 5 4 8 8 C 1.47539 * 120.18951 * 179.70767 * 7 6 5 9 9 O 1.21590 * 119.99461 * 180.02562 * 8 7 6 10 10 N 1.34770 * 120.00339 * 0.02562 * 8 7 6 11 11 C 1.46496 * 120.00314 * 180.02562 * 10 8 7 12 12 H 1.09004 * 112.84823 * 23.80714 * 11 10 8 13 13 C 1.53778 * 113.61667 * 154.99746 * 11 10 8 14 14 C 1.53787 * 87.08037 * 89.11874 * 13 11 10 15 15 H 1.09004 * 113.61177 * 270.79789 * 14 13 11 16 16 C 1.50694 * 113.61413 * 139.98055 * 14 13 11 17 17 C 1.38461 * 119.98659 * 119.72648 * 16 14 13 18 18 F 1.35097 * 120.01085 * 0.02562 * 17 16 14 19 19 C 1.38447 * 119.97370 * 179.76782 * 17 16 14 20 20 C 1.38393 * 119.94783 * 0.48095 * 19 17 16 21 21 F 1.35104 * 120.00951 * 179.78938 * 20 19 17 22 22 C 1.38499 * 119.97832 * 359.77707 * 20 19 17 23 23 C 1.38184 * 120.02356 * 359.97438 * 22 20 19 24 24 C 1.53777 * 87.07838 * 25.43330 * 14 13 11 25 25 C 1.40170 * 119.61851 * 359.72274 * 7 6 5 26 26 O 1.35659 * 120.15439 * 180.02562 * 25 7 6 27 27 C 1.38100 * 119.80637 * 300.00577 * 4 2 1 28 28 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 29 29 H 1.09000 * 109.46638 * 119.99419 * 2 1 3 30 30 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 31 31 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 32 32 H 1.07994 * 119.85114 * 359.97438 * 5 4 2 33 33 H 1.08004 * 120.04432 * 180.25782 * 6 5 4 34 34 H 0.97006 * 119.99996 * 0.02562 * 10 8 7 35 35 H 1.08999 * 113.61708 * 203.66638 * 13 11 10 36 36 H 1.09003 * 113.61414 * 334.48990 * 13 11 10 37 37 H 1.07992 * 120.02031 * 180.25253 * 19 17 16 38 38 H 1.07998 * 119.99012 * 179.97438 * 22 20 19 39 39 H 1.07998 * 119.97277 * 180.02562 * 23 22 20 40 40 H 1.09006 * 113.61464 * 220.01868 * 24 14 13 41 41 H 1.08999 * 113.61471 * 89.11731 * 24 14 13 42 42 H 0.96704 * 113.99567 * 269.98112 * 26 25 7 43 43 H 1.08002 * 119.95770 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7105 -1.2303 5 6 2.7229 -0.0319 -2.1422 6 6 3.1927 -0.6735 -3.2680 7 6 2.8604 -2.0106 -3.4973 8 6 3.3545 -2.7015 -4.7037 9 8 3.0627 -3.8654 -4.9000 10 7 4.1293 -2.0425 -5.5879 11 6 4.6195 -2.7284 -6.7860 12 1 3.9975 -3.5765 -7.0725 13 6 4.9403 -1.7783 -7.9519 14 6 6.3593 -1.6691 -7.3690 15 1 6.4706 -0.8682 -6.6381 16 6 7.4430 -1.6605 -8.4161 17 6 8.2939 -0.5735 -8.5224 18 9 8.1531 0.4791 -7.6873 19 6 9.2925 -0.5679 -9.4814 20 6 9.4325 -1.6448 -10.3392 21 9 10.4039 -1.6388 -11.2782 22 6 8.5768 -2.7288 -10.2346 23 6 7.5837 -2.7355 -9.2737 24 6 6.1221 -3.0519 -6.7393 25 6 2.0546 -2.6921 -2.5749 26 8 1.7256 -3.9911 -2.7866 27 6 1.5954 -2.0327 -1.4447 28 1 -0.3934 0.4417 0.7649 29 1 1.7923 -0.5138 0.8901 30 1 3.5346 1.7703 0.0322 31 1 1.5616 2.4678 -1.2086 32 1 2.9763 1.0034 -1.9682 33 1 3.8129 -0.1416 -3.9743 34 1 4.3624 -1.1140 -5.4311 35 1 4.9057 -2.2594 -8.9294 36 1 4.3807 -0.8435 -7.9200 37 1 9.9592 0.2778 -9.5623 38 1 8.6857 -3.5691 -10.9042 39 1 6.9172 -3.5813 -9.1926 40 1 6.5176 -3.1447 -5.7278 41 1 6.4105 -3.8811 -7.3853 42 1 0.9088 -4.1130 -3.2897 43 1 0.9738 -2.5537 -0.7316 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_13422076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:35 Heat of formation + Delta-G solvation = -107.446964 kcal Electronic energy + Delta-G solvation = -31062.516980 eV Core-core repulsion = 26290.708213 eV Total energy + Delta-G solvation = -4771.808767 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.116 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -50.11211 -50.07135 -41.95177 -41.09830 -39.88169 -38.75872 -38.29045 -37.23406 -34.79913 -32.94634 -31.89261 -31.36032 -31.26576 -27.72937 -26.77525 -26.13722 -24.39561 -24.00792 -23.63402 -22.83274 -21.83658 -20.37853 -19.51016 -19.25113 -18.83594 -18.43402 -18.24269 -17.75011 -17.20521 -17.08386 -16.84345 -16.70539 -16.48925 -16.40813 -16.36059 -16.01251 -15.61726 -15.53888 -15.33353 -15.25088 -15.15509 -14.53216 -14.18483 -14.06307 -14.00408 -13.79668 -13.60069 -13.51822 -13.40671 -13.01322 -12.86626 -12.59263 -12.53937 -12.13052 -12.10040 -11.87912 -11.78174 -11.35825 -11.00715 -10.49939 -10.25290 -10.13207 -10.07528 -9.89900 -9.63108 -4.91506 -0.54419 -0.16037 -0.06551 -0.01260 1.27075 1.56653 1.68776 1.92290 1.95830 2.24737 2.42544 2.78927 3.02254 3.23013 3.25915 3.40448 3.43645 3.46646 3.56824 3.63032 3.64172 3.71662 3.83208 3.90158 4.00143 4.03201 4.11239 4.15009 4.24922 4.52346 4.55769 4.62080 4.66663 4.69729 4.77834 4.80673 4.82494 4.86198 4.87919 4.95944 4.99385 5.04567 5.07724 5.09969 5.21930 5.43467 5.51650 5.69349 6.35131 6.63090 6.86736 7.05485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.089 4.089 3 Si 0.778 3.222 4 C -0.040 4.040 5 C -0.155 4.155 6 C -0.054 4.054 7 C -0.181 4.181 8 C 0.562 3.438 9 O -0.555 6.555 10 N -0.699 5.699 11 C 0.115 3.885 12 H 0.097 0.903 13 C -0.122 4.122 14 C -0.072 4.072 15 H 0.101 0.899 16 C -0.112 4.112 17 C 0.116 3.884 18 F -0.138 7.138 19 C -0.198 4.198 20 C 0.108 3.892 21 F -0.142 7.142 22 C -0.154 4.154 23 C -0.055 4.055 24 C -0.139 4.139 25 C 0.160 3.840 26 O -0.492 6.492 27 C -0.135 4.135 28 H 0.406 0.594 29 H 0.098 0.902 30 H -0.283 1.283 31 H -0.289 1.289 32 H 0.136 0.864 33 H 0.163 0.837 34 H 0.411 0.589 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.151 0.849 38 H 0.163 0.837 39 H 0.172 0.828 40 H 0.065 0.935 41 H 0.112 0.888 42 H 0.410 0.590 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.204 4.124 2.599 5.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.198 4.198 3 Si 0.682 3.318 4 C -0.041 4.041 5 C -0.172 4.172 6 C -0.072 4.072 7 C -0.185 4.185 8 C 0.350 3.650 9 O -0.434 6.434 10 N -0.352 5.352 11 C 0.010 3.990 12 H 0.115 0.885 13 C -0.159 4.159 14 C -0.090 4.090 15 H 0.120 0.880 16 C -0.113 4.113 17 C 0.096 3.904 18 F -0.116 7.116 19 C -0.218 4.218 20 C 0.088 3.912 21 F -0.120 7.120 22 C -0.173 4.173 23 C -0.073 4.073 24 C -0.177 4.177 25 C 0.114 3.886 26 O -0.306 6.306 27 C -0.153 4.153 28 H 0.258 0.742 29 H 0.116 0.884 30 H -0.210 1.210 31 H -0.217 1.217 32 H 0.153 0.847 33 H 0.180 0.820 34 H 0.249 0.751 35 H 0.133 0.867 36 H 0.104 0.896 37 H 0.169 0.831 38 H 0.180 0.820 39 H 0.189 0.811 40 H 0.084 0.916 41 H 0.130 0.870 42 H 0.270 0.730 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.320 3.489 1.785 4.136 hybrid contribution 0.231 0.220 -0.426 0.532 sum -1.090 3.709 1.359 4.098 Atomic orbital electron populations 1.86430 1.16768 1.82560 1.51530 1.24996 0.86323 1.11728 0.96799 0.94043 0.77552 0.74896 0.85291 1.19851 0.95137 0.93593 0.95476 1.21024 1.00784 1.00055 0.95361 1.21375 0.96924 0.91987 0.96958 1.20437 1.05626 0.95543 0.96904 1.18149 0.78202 0.85876 0.82769 1.90807 1.58733 1.17375 1.76505 1.45517 1.51241 1.15939 1.22483 1.21903 0.95325 0.96776 0.85019 0.88537 1.23427 0.93736 1.00480 0.98304 1.21537 0.92451 0.99415 0.95638 0.88032 1.19958 0.97858 0.93684 0.99787 1.17315 0.96872 0.85479 0.90721 1.91498 1.95173 1.55339 1.69613 1.21165 1.01647 1.01135 0.97821 1.17565 0.88790 0.95938 0.88859 1.91528 1.60938 1.96745 1.62836 1.21522 0.95749 0.98546 1.01462 1.21070 0.96697 0.97835 0.91708 1.23599 0.95280 0.96909 1.01934 1.18726 0.93850 0.83581 0.92447 1.84708 1.48357 1.20013 1.77496 1.21397 1.01209 0.94329 0.98390 0.74222 0.88414 1.20987 1.21659 0.84724 0.81989 0.75116 0.86665 0.89611 0.83130 0.81963 0.81100 0.91613 0.86978 0.73000 0.83624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.46 12.74 -148.98 -1.90 -0.44 16 2 C -0.09 0.26 2.80 71.23 0.20 0.46 16 3 Si 0.78 -4.00 29.77 68.60 2.04 -1.95 16 4 C -0.04 -0.11 5.43 -19.84 -0.11 -0.21 16 5 C -0.15 -0.24 8.65 22.24 0.19 -0.05 16 6 C -0.05 -0.01 9.54 22.52 0.21 0.20 16 7 C -0.18 -0.91 5.89 -20.01 -0.12 -1.03 16 8 C 0.56 3.63 7.76 86.70 0.67 4.30 16 9 O -0.56 -7.68 14.76 16.92 0.25 -7.43 16 10 N -0.70 0.51 5.21 -443.22 -2.31 -1.80 16 11 C 0.11 -0.25 4.32 45.52 0.20 -0.06 16 12 H 0.10 0.11 7.46 -2.38 -0.02 0.09 16 13 C -0.12 0.77 7.29 31.12 0.23 1.00 16 14 C -0.07 0.32 3.78 -11.01 -0.04 0.28 16 15 H 0.10 -0.41 7.45 -2.39 -0.02 -0.43 16 16 C -0.11 0.26 5.29 -19.81 -0.10 0.16 16 17 C 0.12 0.15 7.25 22.37 0.16 0.32 16 18 F -0.14 -0.45 16.36 44.97 0.74 0.28 16 19 C -0.20 -0.33 10.01 22.36 0.22 -0.11 16 20 C 0.11 0.17 7.30 22.37 0.16 0.33 16 21 F -0.14 -0.65 17.27 44.97 0.78 0.12 16 22 C -0.15 0.45 10.03 22.32 0.22 0.67 16 23 C -0.06 0.28 8.61 22.26 0.19 0.47 16 24 C -0.14 0.50 7.25 31.12 0.23 0.73 16 25 C 0.16 1.11 6.72 22.84 0.15 1.26 16 26 O -0.49 -4.07 11.58 -68.84 -0.80 -4.87 16 27 C -0.13 -0.61 9.53 22.34 0.21 -0.40 16 28 H 0.41 -5.27 8.74 -74.06 -0.65 -5.92 16 29 H 0.10 -0.63 7.96 -2.39 -0.02 -0.65 16 30 H -0.28 0.06 7.11 99.48 0.71 0.77 16 31 H -0.29 -0.46 7.11 99.48 0.71 0.24 16 32 H 0.14 -0.09 4.85 -2.91 -0.01 -0.10 16 33 H 0.16 -1.12 6.40 -2.91 -0.02 -1.14 16 34 H 0.41 -2.42 6.73 -92.70 -0.62 -3.04 16 35 H 0.12 -0.99 7.72 -2.39 -0.02 -1.01 16 36 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 37 H 0.15 0.03 8.06 -2.91 -0.02 0.01 16 38 H 0.16 -1.10 8.06 -2.91 -0.02 -1.13 16 39 H 0.17 -1.78 6.65 -2.91 -0.02 -1.80 16 40 H 0.07 -0.03 8.14 -2.38 -0.02 -0.05 16 41 H 0.11 -0.72 6.31 -2.39 -0.02 -0.74 16 42 H 0.41 0.45 9.06 -74.05 -0.67 -0.22 16 43 H 0.15 0.43 8.06 -2.91 -0.02 0.40 16 Total: 0.00 -23.99 369.13 0.91 -23.08 By element: Atomic # 1 Polarization: -14.55 SS G_CDS: -0.78 Total: -15.33 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 2.89 Total: 8.33 kcal Atomic # 7 Polarization: 0.51 SS G_CDS: -2.31 Total: -1.80 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -2.44 Total: -12.74 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 1.51 Total: 0.41 kcal Atomic # 14 Polarization: -4.00 SS G_CDS: 2.04 Total: -1.95 kcal Total: -23.99 0.91 -23.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_13422076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.368 kcal (2) G-P(sol) polarization free energy of solvation -23.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds