Wall clock time and date at job start Sun Mar 7 2021 00:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 111.00108 * 2 1 4 4 C 1.39054 * 110.99836 * 123.95298 * 2 1 3 5 5 C 1.39199 * 119.93091 * 120.02217 * 4 2 1 6 6 C 1.50703 * 119.96237 * 0.02562 * 5 4 2 7 7 O 1.42904 * 109.47207 * 75.00300 * 6 5 4 8 8 Si 1.86300 * 109.46730 * 194.99830 * 6 5 4 9 9 C 1.37632 * 120.06981 * 179.76432 * 5 4 2 10 10 C 1.39774 * 119.92581 * 0.48541 * 9 5 4 11 11 C 1.47524 * 120.06243 * 179.76727 * 10 9 5 12 12 O 1.21591 * 120.00638 * 359.72703 * 11 10 9 13 13 N 1.34781 * 119.99598 * 179.72916 * 11 10 9 14 14 C 1.46504 * 119.99665 * 180.02562 * 13 11 10 15 15 H 1.08999 * 112.85136 * 336.19533 * 14 13 11 16 16 C 1.53779 * 113.61484 * 107.49929 * 14 13 11 17 17 C 1.53785 * 87.08093 * 89.11287 * 16 14 13 18 18 H 1.09002 * 113.61570 * 270.88522 * 17 16 14 19 19 C 1.50701 * 113.69000 * 139.98979 * 17 16 14 20 20 C 1.38460 * 119.98537 * 140.65869 * 19 17 16 21 21 F 1.35095 * 120.00810 * 0.02967 * 20 19 17 22 22 C 1.38441 * 119.97289 * 179.76781 * 20 19 17 23 23 C 1.38398 * 119.94756 * 0.48683 * 22 20 19 24 24 F 1.35097 * 120.01327 * 179.78756 * 23 22 20 25 25 C 1.38495 * 119.97581 * 359.77361 * 23 22 20 26 26 C 1.38183 * 120.02784 * 359.97438 * 25 23 22 27 27 C 1.53781 * 87.08241 * 25.43228 * 17 16 14 28 28 C 1.39810 * 119.86506 * 359.49333 * 10 9 5 29 29 C 1.37585 * 119.93058 * 0.25175 * 28 10 9 30 30 H 1.08996 * 109.46738 * 296.04415 * 1 2 3 31 31 H 1.08996 * 109.46966 * 56.04710 * 1 2 3 32 32 H 1.08999 * 109.46893 * 176.05061 * 1 2 3 33 33 H 1.08999 * 109.47292 * 183.94903 * 3 2 1 34 34 H 1.08994 * 109.46926 * 303.95482 * 3 2 1 35 35 H 1.08999 * 109.47076 * 63.95588 * 3 2 1 36 36 H 1.08994 * 109.47059 * 314.99739 * 6 5 4 37 37 H 0.96696 * 113.99727 * 180.02562 * 7 6 5 38 38 H 1.48501 * 110.00257 * 299.99861 * 8 6 5 39 39 H 1.48497 * 110.00265 * 61.32194 * 8 6 5 40 40 H 1.07999 * 120.03436 * 180.23053 * 9 5 4 41 41 H 0.96996 * 120.00382 * 359.97438 * 13 11 10 42 42 H 1.09003 * 113.61775 * 334.57164 * 16 14 13 43 43 H 1.08996 * 113.61960 * 203.65890 * 16 14 13 44 44 H 1.07991 * 120.02736 * 180.25786 * 22 20 19 45 45 H 1.08001 * 119.98764 * 180.02562 * 25 23 22 46 46 H 1.07997 * 119.97482 * 180.02562 * 26 25 23 47 47 H 1.09005 * 113.61302 * 89.11252 * 27 17 16 48 48 H 1.08993 * 113.62030 * 220.02098 * 27 17 16 49 49 H 1.07998 * 120.03051 * 180.26813 * 28 10 9 50 50 H 1.08002 * 119.96667 * 179.97438 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9673 -0.7251 1.0768 5 6 2.7797 -1.8328 0.8519 6 6 3.1182 -2.2441 -0.5578 7 8 4.0876 -1.3431 -1.0971 8 14 3.8135 -3.9725 -0.5503 9 6 3.2784 -2.5496 1.9158 10 6 2.9600 -2.1702 3.2228 11 6 3.4887 -2.9395 4.3652 12 8 4.1981 -3.9075 4.1702 13 7 3.1853 -2.5692 5.6251 14 6 3.7108 -3.3328 6.7596 15 1 3.9641 -4.3600 6.4975 16 6 4.8200 -2.6012 7.5337 17 6 3.7046 -1.9864 8.3955 18 1 3.3119 -1.0502 7.9987 19 6 4.0478 -1.9028 9.8606 20 6 3.6748 -0.7907 10.5963 21 9 3.0030 0.2189 10.0011 22 6 3.9860 -0.7163 11.9432 23 6 4.6785 -1.7494 12.5504 24 9 4.9866 -1.6762 13.8637 25 6 5.0552 -2.8583 11.8112 26 6 4.7395 -2.9339 10.4681 27 6 2.8541 -3.2147 8.0313 28 6 2.1442 -1.0568 3.4454 29 6 1.6530 -0.3412 2.3778 30 1 -0.3633 0.4512 0.9233 31 1 -0.3633 0.5739 -0.8524 32 1 -0.3633 -1.0252 -0.0708 33 1 3.0828 1.3432 -0.0708 34 1 1.5898 1.9163 -0.8524 35 1 1.7045 1.8723 0.9233 36 1 2.2171 -2.2176 -1.1703 37 1 4.3527 -1.5476 -2.0042 38 1 5.0426 -4.0220 0.2815 39 1 2.8035 -4.9239 -0.0213 40 1 3.9116 -3.4068 1.7407 41 1 2.6197 -1.7967 5.7807 42 1 5.3616 -1.8697 6.9339 43 1 5.4806 -3.2693 8.0862 44 1 3.6920 0.1488 12.5188 45 1 5.5952 -3.6648 12.2850 46 1 5.0333 -3.7992 9.8926 47 1 2.9772 -4.0508 8.7198 48 1 1.8086 -2.9788 7.8330 49 1 1.9000 -0.7587 4.4543 50 1 1.0224 0.5187 2.5491 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_13422196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:43 Heat of formation + Delta-G solvation = -49.593888 kcal Electronic energy + Delta-G solvation = -35322.326124 eV Core-core repulsion = 30339.669479 eV Total energy + Delta-G solvation = -4982.656645 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.159 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -50.11074 -50.07489 -41.99663 -41.24458 -40.22083 -38.80620 -37.73611 -37.29078 -34.91472 -33.01203 -31.97564 -31.71560 -31.07240 -28.53732 -26.94017 -26.87021 -26.78968 -25.72341 -24.33006 -23.52650 -22.99324 -22.78934 -21.35883 -20.41563 -19.39804 -18.92849 -18.32399 -18.25370 -18.01895 -17.51396 -17.21091 -17.08346 -16.85021 -16.52580 -16.40847 -16.30084 -16.23738 -15.94965 -15.86834 -15.55932 -15.38983 -15.25901 -14.99108 -14.78043 -14.60672 -14.16399 -14.09782 -13.91032 -13.80499 -13.66293 -13.60125 -13.50028 -13.35981 -13.08550 -12.88839 -12.77198 -12.64266 -12.60107 -12.19199 -12.12128 -12.06203 -11.81059 -11.39381 -11.30815 -10.35824 -10.28811 -10.19473 -10.13356 -9.88470 -9.63542 -9.55829 -5.04867 -0.52767 -0.16457 -0.06785 -0.00133 1.27583 1.47660 1.57653 1.85177 1.94518 2.24233 2.46604 2.73342 2.78716 3.23787 3.33799 3.39913 3.43294 3.47537 3.56981 3.58860 3.62340 3.80742 3.83950 3.88846 3.95454 4.02344 4.07207 4.12580 4.14774 4.36616 4.38845 4.42559 4.51547 4.57085 4.60496 4.63251 4.68343 4.70725 4.76951 4.80549 4.84261 4.87307 4.90221 4.94118 4.97396 4.98875 5.00594 5.03338 5.04441 5.14089 5.19808 5.40837 5.47867 5.68980 5.84206 6.20845 6.28264 6.95257 6.96444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.517 5.517 3 C 0.034 3.966 4 C 0.143 3.857 5 C -0.082 4.082 6 C -0.046 4.046 7 O -0.553 6.553 8 Si 0.754 3.246 9 C -0.082 4.082 10 C -0.152 4.152 11 C 0.561 3.439 12 O -0.580 6.580 13 N -0.692 5.692 14 C 0.110 3.890 15 H 0.093 0.907 16 C -0.139 4.139 17 C -0.071 4.071 18 H 0.104 0.896 19 C -0.112 4.112 20 C 0.117 3.883 21 F -0.137 7.137 22 C -0.198 4.198 23 C 0.108 3.892 24 F -0.142 7.142 25 C -0.155 4.155 26 C -0.056 4.056 27 C -0.120 4.120 28 C -0.056 4.056 29 C -0.154 4.154 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.039 0.961 36 H 0.095 0.905 37 H 0.400 0.600 38 H -0.303 1.303 39 H -0.296 1.296 40 H 0.113 0.887 41 H 0.415 0.585 42 H 0.066 0.934 43 H 0.111 0.889 44 H 0.151 0.849 45 H 0.162 0.838 46 H 0.170 0.830 47 H 0.115 0.885 48 H 0.088 0.912 49 H 0.164 0.836 50 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.117 2.130 -2.553 5.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.238 5.238 3 C -0.112 4.112 4 C 0.048 3.952 5 C -0.083 4.083 6 C -0.157 4.157 7 O -0.362 6.362 8 Si 0.662 3.338 9 C -0.101 4.101 10 C -0.156 4.156 11 C 0.350 3.650 12 O -0.461 6.461 13 N -0.344 5.344 14 C 0.005 3.995 15 H 0.111 0.889 16 C -0.177 4.177 17 C -0.089 4.089 18 H 0.122 0.878 19 C -0.113 4.113 20 C 0.098 3.902 21 F -0.115 7.115 22 C -0.217 4.217 23 C 0.089 3.911 24 F -0.120 7.120 25 C -0.173 4.173 26 C -0.073 4.073 27 C -0.158 4.158 28 C -0.075 4.075 29 C -0.174 4.174 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.057 0.943 36 H 0.112 0.888 37 H 0.251 0.749 38 H -0.232 1.232 39 H -0.223 1.223 40 H 0.130 0.870 41 H 0.253 0.747 42 H 0.085 0.915 43 H 0.130 0.870 44 H 0.169 0.831 45 H 0.180 0.820 46 H 0.188 0.812 47 H 0.134 0.866 48 H 0.106 0.894 49 H 0.181 0.819 50 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.357 0.872 -2.046 4.027 hybrid contribution -0.590 1.280 1.507 2.063 sum -3.947 2.151 -0.539 4.527 Atomic orbital electron populations 1.22579 0.84298 1.03059 1.02362 1.59365 1.09365 1.15120 1.39953 1.22443 1.00764 0.86099 1.01926 1.18959 0.93735 0.92526 0.89987 1.19493 0.98601 0.95870 0.94319 1.24358 0.96428 1.02765 0.92154 1.86427 1.59920 1.54506 1.35382 0.94897 0.77008 0.74308 0.87540 1.21059 0.97727 0.98826 0.92488 1.19848 1.03704 0.99450 0.92553 1.18353 0.79491 0.83321 0.83851 1.90783 1.39653 1.29695 1.86006 1.45459 1.52051 1.32770 1.04084 1.21962 0.96002 0.96293 0.85217 0.88857 1.23598 0.96463 1.00129 0.97518 1.21534 0.98216 0.99908 0.89221 0.87766 1.19943 1.01009 0.93634 0.96713 1.17294 0.96148 0.86288 0.90506 1.91499 1.77754 1.58611 1.83665 1.21168 1.04193 1.01629 0.94750 1.17564 0.99182 0.96053 0.78323 1.91526 1.91103 1.96535 1.32880 1.21515 1.02709 0.98074 0.95036 1.21057 0.94527 0.98398 0.93363 1.23428 0.99328 0.97971 0.95085 1.21455 0.93315 0.91762 1.00990 1.21940 1.01730 1.01570 0.92160 0.93958 0.89172 0.91418 0.92058 0.89287 0.94258 0.88763 0.74921 1.23176 1.22318 0.86952 0.74656 0.91503 0.87047 0.83078 0.82029 0.81218 0.86648 0.89353 0.81878 0.82553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.09 9.34 127.69 1.19 1.10 16 2 N -0.52 -0.11 4.20 -745.12 -3.13 -3.24 16 3 C 0.03 -0.06 9.38 127.69 1.20 1.14 16 4 C 0.14 0.43 4.70 38.47 0.18 0.61 16 5 C -0.08 -0.56 5.30 -19.78 -0.10 -0.66 16 6 C -0.05 -0.13 2.32 71.24 0.17 0.04 16 7 O -0.55 -1.14 12.86 -148.98 -1.92 -3.05 16 8 Si 0.75 2.59 30.20 68.60 2.07 4.66 16 9 C -0.08 -0.85 8.19 22.50 0.18 -0.66 16 10 C -0.15 -0.98 5.88 -20.08 -0.12 -1.09 16 11 C 0.56 4.62 7.76 86.69 0.67 5.29 16 12 O -0.58 -10.05 15.93 -4.00 -0.06 -10.12 16 13 N -0.69 0.20 5.21 -443.19 -2.31 -2.11 16 14 C 0.11 -0.18 4.32 45.52 0.20 0.02 16 15 H 0.09 0.22 7.46 -2.39 -0.02 0.20 16 16 C -0.14 0.47 7.26 31.12 0.23 0.70 16 17 C -0.07 0.34 3.78 -11.01 -0.04 0.30 16 18 H 0.10 -0.50 7.42 -2.39 -0.02 -0.51 16 19 C -0.11 0.29 5.30 -19.81 -0.10 0.19 16 20 C 0.12 0.11 7.25 22.37 0.16 0.27 16 21 F -0.14 -0.36 16.35 44.97 0.74 0.37 16 22 C -0.20 -0.27 10.01 22.36 0.22 -0.05 16 23 C 0.11 0.15 7.30 22.37 0.16 0.32 16 24 F -0.14 -0.64 17.27 44.97 0.78 0.14 16 25 C -0.15 0.45 10.02 22.32 0.22 0.68 16 26 C -0.06 0.28 8.54 22.25 0.19 0.47 16 27 C -0.12 0.77 7.29 31.12 0.23 1.00 16 28 C -0.06 0.06 9.53 22.50 0.21 0.27 16 29 C -0.15 0.14 8.53 22.36 0.19 0.33 16 30 H 0.04 -0.23 7.10 -2.39 -0.02 -0.25 16 31 H 0.09 -0.54 8.12 -2.39 -0.02 -0.56 16 32 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.09 -0.38 8.12 -2.39 -0.02 -0.40 16 35 H 0.04 -0.15 7.32 -2.39 -0.02 -0.16 16 36 H 0.09 -0.01 7.77 -2.39 -0.02 -0.03 16 37 H 0.40 -3.21 8.74 -74.06 -0.65 -3.86 16 38 H -0.30 -3.83 6.74 99.48 0.67 -3.16 16 39 H -0.30 -2.93 7.11 99.48 0.71 -2.22 16 40 H 0.11 1.66 4.47 -2.91 -0.01 1.65 16 41 H 0.41 -2.68 6.72 -92.71 -0.62 -3.30 16 42 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 43 H 0.11 -0.67 6.40 -2.39 -0.02 -0.69 16 44 H 0.15 -0.02 8.06 -2.92 -0.02 -0.05 16 45 H 0.16 -1.09 8.06 -2.91 -0.02 -1.11 16 46 H 0.17 -1.75 6.72 -2.91 -0.02 -1.77 16 47 H 0.12 -0.99 7.64 -2.38 -0.02 -1.01 16 48 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 49 H 0.16 -1.42 6.39 -2.91 -0.02 -1.44 16 50 H 0.16 -0.93 6.99 -2.91 -0.02 -0.95 16 Total: 0.00 -24.72 413.92 1.16 -23.56 By element: Atomic # 1 Polarization: -20.22 SS G_CDS: -0.25 Total: -20.47 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 5.24 Total: 10.25 kcal Atomic # 7 Polarization: 0.10 SS G_CDS: -5.44 Total: -5.34 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -1.98 Total: -13.17 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 1.51 Total: 0.51 kcal Atomic # 14 Polarization: 2.59 SS G_CDS: 2.07 Total: 4.66 kcal Total: -24.72 1.16 -23.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_13422196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.034 kcal (2) G-P(sol) polarization free energy of solvation -24.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds