Wall clock time and date at job start Sun Mar 7 2021 00:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86296 * 109.47152 * 2 1 4 4 C 1.50697 * 109.47172 * 120.00432 * 2 1 3 5 5 C 1.32691 * 124.68458 * 64.72102 * 4 2 1 6 6 C 1.44511 * 113.09463 * 180.26595 * 5 4 2 7 7 C 1.47045 * 123.48911 * 179.97438 * 6 5 4 8 8 O 1.21654 * 119.99903 * 179.97438 * 7 6 5 9 9 N 1.34783 * 120.00125 * 359.97438 * 7 6 5 10 10 C 1.46494 * 119.99937 * 180.02562 * 9 7 6 11 11 H 1.08993 * 112.85576 * 23.79867 * 10 9 7 12 12 C 1.53789 * 113.61572 * 154.99778 * 10 9 7 13 13 C 1.53781 * 87.07833 * 89.11229 * 12 10 9 14 14 H 1.09000 * 113.61622 * 270.79703 * 13 12 10 15 15 C 1.50705 * 113.61280 * 139.98304 * 13 12 10 16 16 C 1.38186 * 119.98592 * 300.00083 * 15 13 12 17 17 C 1.38232 * 120.04793 * 180.02562 * 16 15 13 18 18 C 1.38456 * 120.02402 * 359.96728 * 17 16 15 19 19 F 1.35098 * 120.00795 * 179.97438 * 18 17 16 20 20 C 1.38433 * 119.97562 * 0.02562 * 18 17 16 21 21 C 1.38393 * 119.95169 * 359.76354 * 20 18 17 22 22 F 1.35105 * 120.01475 * 180.23321 * 21 20 18 23 23 C 1.53772 * 87.08454 * 25.43333 * 13 12 10 24 24 C 1.36219 * 113.01793 * 0.02562 * 6 5 4 25 25 Cl 1.73595 * 124.60467 * 179.97438 * 24 6 5 26 26 S 1.70442 * 110.79152 * 0.02562 * 24 6 5 27 27 H 0.96694 * 113.99648 * 300.00138 * 1 2 3 28 28 H 1.09003 * 109.47226 * 240.00395 * 2 1 3 29 29 H 1.48496 * 110.00094 * 178.67907 * 3 2 1 30 30 H 1.48500 * 110.00169 * 300.00340 * 3 2 1 31 31 H 1.07997 * 123.45062 * 0.24611 * 5 4 2 32 32 H 0.97000 * 120.00130 * 359.97438 * 9 7 6 33 33 H 1.08996 * 113.61508 * 203.65680 * 12 10 9 34 34 H 1.08998 * 113.61048 * 334.47961 * 12 10 9 35 35 H 1.08000 * 119.97639 * 359.97230 * 16 15 13 36 36 H 1.07997 * 119.98635 * 179.97438 * 17 16 15 37 37 H 1.08002 * 120.02329 * 179.97438 * 20 18 17 38 38 H 1.09002 * 113.61644 * 220.01850 * 23 13 12 39 39 H 1.09000 * 113.61360 * 89.11408 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.7438 -1.9986 1.4880 6 6 2.3273 -2.4166 2.7422 7 6 2.2548 -3.7941 3.2516 8 8 2.7697 -4.0765 4.3171 9 7 1.6180 -4.7439 2.5382 10 6 1.5453 -6.1161 3.0460 11 1 1.6530 -6.1729 4.1291 12 6 0.3456 -6.9109 2.5038 13 6 1.2537 -7.3340 1.3371 14 1 1.2269 -6.6467 0.4914 15 6 1.0784 -8.7735 0.9269 16 6 1.3170 -9.7851 1.8376 17 6 1.1571 -11.1059 1.4627 18 6 0.7570 -11.4167 0.1742 19 9 0.6013 -12.7077 -0.1921 20 6 0.5175 -10.4041 -0.7389 21 6 0.6737 -9.0819 -0.3612 22 9 0.4358 -8.0925 -1.2499 23 6 2.4439 -7.1036 2.2830 24 6 2.9505 -1.4022 3.4042 25 17 3.7501 -1.5690 4.9359 26 16 2.8372 0.0535 2.5249 27 1 -0.3932 0.4417 0.7650 28 1 1.7924 -0.5138 -0.8900 29 1 3.5346 1.7703 0.0322 30 1 1.5615 2.4679 -1.2084 31 1 1.2095 -2.6660 0.8281 32 1 1.2071 -4.5187 1.6889 33 1 0.0447 -7.7391 3.1453 34 1 -0.4928 -6.2836 2.2010 35 1 1.6295 -9.5435 2.8428 36 1 1.3443 -11.8957 2.1751 37 1 0.2057 -10.6457 -1.7443 38 1 3.3001 -6.6318 1.8008 39 1 2.7166 -7.9845 2.8643 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_13431040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:54 Heat of formation + Delta-G solvation = -64.357752 kcal Electronic energy + Delta-G solvation = -29507.507954 eV Core-core repulsion = 24785.602321 eV Total energy + Delta-G solvation = -4721.905632 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.034 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -50.08128 -50.05127 -41.64926 -40.48913 -39.11437 -38.54752 -37.93052 -36.94256 -34.55681 -31.93970 -31.72360 -31.35355 -27.10486 -26.72645 -26.65777 -25.36281 -24.18522 -22.84219 -22.29197 -20.87401 -20.27087 -19.46417 -19.29123 -18.26800 -17.95294 -17.77325 -17.29965 -17.05825 -16.85509 -16.55955 -16.44027 -16.37409 -16.02602 -15.89457 -15.70475 -15.51391 -15.24521 -14.95554 -14.71891 -14.51061 -14.29553 -14.08496 -13.92737 -13.74975 -13.55952 -13.43183 -12.91253 -12.83965 -12.59625 -12.56520 -12.38235 -12.17880 -12.02918 -11.86981 -11.73139 -11.31418 -10.97406 -10.58179 -10.19545 -10.09754 -9.89672 -9.65033 -9.59640 -5.14556 -0.63202 -0.19093 -0.13333 -0.04066 0.47844 0.71382 1.04392 1.18403 1.57582 1.89920 2.11060 2.15298 2.27653 2.81547 3.27956 3.29450 3.44424 3.48530 3.59571 3.64354 3.67528 3.82006 3.86921 3.89325 3.93894 4.07283 4.16985 4.35530 4.44355 4.61015 4.69888 4.74093 4.77227 4.83061 4.85311 4.90761 4.91243 4.96258 5.00682 5.07483 5.11799 5.26276 5.57524 5.71955 6.43028 6.70175 7.12575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.020 4.020 3 Si 0.715 3.285 4 C -0.229 4.229 5 C -0.069 4.069 6 C -0.168 4.168 7 C 0.574 3.426 8 O -0.556 6.556 9 N -0.695 5.695 10 C 0.117 3.883 11 H 0.096 0.904 12 C -0.122 4.122 13 C -0.072 4.072 14 H 0.102 0.898 15 C -0.111 4.111 16 C -0.056 4.056 17 C -0.155 4.155 18 C 0.107 3.893 19 F -0.142 7.142 20 C -0.199 4.199 21 C 0.116 3.884 22 F -0.137 7.137 23 C -0.138 4.138 24 C -0.138 4.138 25 Cl 0.005 6.995 26 S 0.267 5.733 27 H 0.398 0.602 28 H 0.133 0.867 29 H -0.262 1.262 30 H -0.267 1.267 31 H 0.177 0.823 32 H 0.412 0.588 33 H 0.113 0.887 34 H 0.085 0.915 35 H 0.172 0.828 36 H 0.162 0.838 37 H 0.150 0.850 38 H 0.066 0.934 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.517 2.932 -0.177 3.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.133 4.133 3 Si 0.617 3.383 4 C -0.347 4.347 5 C -0.098 4.098 6 C -0.188 4.188 7 C 0.360 3.640 8 O -0.435 6.435 9 N -0.347 5.347 10 C 0.012 3.988 11 H 0.114 0.886 12 C -0.160 4.160 13 C -0.090 4.090 14 H 0.120 0.880 15 C -0.112 4.112 16 C -0.073 4.073 17 C -0.173 4.173 18 C 0.088 3.912 19 F -0.121 7.121 20 C -0.218 4.218 21 C 0.096 3.904 22 F -0.116 7.116 23 C -0.177 4.177 24 C -0.285 4.285 25 Cl 0.033 6.967 26 S 0.533 5.467 27 H 0.249 0.751 28 H 0.150 0.850 29 H -0.188 1.188 30 H -0.192 1.192 31 H 0.194 0.806 32 H 0.250 0.750 33 H 0.132 0.868 34 H 0.104 0.896 35 H 0.189 0.811 36 H 0.180 0.820 37 H 0.168 0.832 38 H 0.085 0.915 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.023 4.469 -0.042 4.585 hybrid contribution -0.446 -2.198 -1.080 2.489 sum -1.469 2.271 -1.122 2.928 Atomic orbital electron populations 1.86522 1.16141 1.81985 1.50474 1.24439 0.85524 1.08818 0.94553 0.94321 0.79764 0.75750 0.88420 1.24941 1.08291 0.98671 1.02764 1.21124 0.99010 0.95535 0.94125 1.20310 1.06434 0.94229 0.97784 1.17641 0.78118 0.84379 0.83821 1.90858 1.47127 1.82385 1.23142 1.45425 1.56354 1.08364 1.24525 1.21875 0.97538 0.80119 0.99305 0.88577 1.23421 0.96237 1.00208 0.96138 1.21540 0.98153 0.91239 0.98073 0.87980 1.19975 1.01896 0.97585 0.91765 1.21072 0.95727 0.89895 1.00625 1.21521 1.01943 0.99142 0.94728 1.17565 1.01502 0.77925 0.94246 1.91524 1.93254 1.35030 1.92289 1.21163 1.07144 0.91234 1.02266 1.17314 1.01245 0.84196 0.87605 1.91503 1.91982 1.60431 1.67677 1.23590 0.96520 1.00056 0.97484 1.25800 1.04617 1.02136 0.95926 1.98427 1.76564 1.97507 1.24158 1.83191 1.50075 1.04890 1.08594 0.75118 0.84966 1.18762 1.19203 0.80568 0.75018 0.86841 0.89607 0.81101 0.82027 0.83180 0.91497 0.87138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 3.28 12.88 -148.98 -1.92 1.36 16 2 C -0.02 0.13 2.94 71.24 0.21 0.34 16 3 Si 0.71 -4.18 30.92 68.60 2.12 -2.06 16 4 C -0.23 1.11 5.65 24.51 0.14 1.25 16 5 C -0.07 0.27 9.75 22.70 0.22 0.49 16 6 C -0.17 -0.31 5.98 -19.84 -0.12 -0.43 16 7 C 0.57 2.65 7.79 86.55 0.67 3.33 16 8 O -0.56 -6.70 14.51 -4.20 -0.06 -6.76 16 9 N -0.69 1.45 5.24 -443.65 -2.33 -0.87 16 10 C 0.12 -0.37 4.32 45.52 0.20 -0.17 16 11 H 0.10 0.03 7.46 -2.39 -0.02 0.01 16 12 C -0.12 0.84 7.29 31.12 0.23 1.07 16 13 C -0.07 0.37 3.78 -11.02 -0.04 0.33 16 14 H 0.10 -0.47 7.45 -2.39 -0.02 -0.49 16 15 C -0.11 0.30 5.30 -19.81 -0.10 0.20 16 16 C -0.06 0.30 8.61 22.26 0.19 0.49 16 17 C -0.15 0.47 10.03 22.32 0.22 0.70 16 18 C 0.11 0.15 7.30 22.37 0.16 0.32 16 19 F -0.14 -0.65 17.27 44.97 0.78 0.13 16 20 C -0.20 -0.30 10.01 22.35 0.22 -0.08 16 21 C 0.12 0.12 7.24 22.37 0.16 0.29 16 22 F -0.14 -0.41 16.36 44.97 0.74 0.32 16 23 C -0.14 0.62 7.25 31.12 0.23 0.85 16 24 C -0.14 -0.43 6.87 67.35 0.46 0.04 16 25 Cl 0.00 0.03 27.20 -2.72 -0.07 -0.04 16 26 S 0.27 -0.83 20.19 -56.49 -1.14 -1.97 16 27 H 0.40 -5.34 8.70 -74.06 -0.64 -5.98 16 28 H 0.13 -0.92 7.96 -2.39 -0.02 -0.94 16 29 H -0.26 0.32 7.11 99.48 0.71 1.03 16 30 H -0.27 -0.18 7.11 99.48 0.71 0.52 16 31 H 0.18 -1.51 7.10 -2.91 -0.02 -1.53 16 32 H 0.41 -2.91 7.24 -92.71 -0.67 -3.58 16 33 H 0.11 -1.01 7.72 -2.39 -0.02 -1.03 16 34 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 35 H 0.17 -1.83 6.65 -2.91 -0.02 -1.85 16 36 H 0.16 -1.11 8.06 -2.91 -0.02 -1.14 16 37 H 0.15 0.02 8.06 -2.91 -0.02 -0.01 16 38 H 0.07 -0.12 8.14 -2.39 -0.02 -0.13 16 39 H 0.11 -0.78 6.31 -2.39 -0.02 -0.80 16 Total: 0.00 -18.54 367.88 1.05 -17.49 By element: Atomic # 1 Polarization: -16.46 SS G_CDS: -0.12 Total: -16.58 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 3.05 Total: 8.99 kcal Atomic # 7 Polarization: 1.45 SS G_CDS: -2.33 Total: -0.87 kcal Atomic # 8 Polarization: -3.43 SS G_CDS: -1.98 Total: -5.41 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 1.51 Total: 0.45 kcal Atomic # 14 Polarization: -4.18 SS G_CDS: 2.12 Total: -2.06 kcal Atomic # 16 Polarization: -0.83 SS G_CDS: -1.14 Total: -1.97 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -0.07 Total: -0.04 kcal Total: -18.54 1.05 -17.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_13431040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.871 kcal (2) G-P(sol) polarization free energy of solvation -18.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds