Wall clock time and date at job start Sun Mar 7 2021 00:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86302 * 109.46947 * 2 1 4 4 C 1.50700 * 109.47157 * 239.99800 * 2 1 3 5 5 C 1.34172 * 125.44135 * 300.00261 * 4 2 1 6 6 C 1.47014 * 105.95795 * 180.02562 * 5 4 2 7 7 C 1.47380 * 127.19299 * 179.97438 * 6 5 4 8 8 O 1.21614 * 120.00238 * 0.02932 * 7 6 5 9 9 N 1.34780 * 119.99957 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00141 * 180.02562 * 9 7 6 11 11 H 1.09010 * 112.84807 * 334.65819 * 10 9 7 12 12 C 1.53778 * 113.61888 * 105.85784 * 10 9 7 13 13 C 1.54055 * 86.98235 * 89.16397 * 12 10 9 14 14 H 1.08994 * 113.68792 * 270.87329 * 13 12 10 15 15 C 1.50701 * 113.61803 * 139.98247 * 13 12 10 16 16 C 1.38189 * 119.98541 * 322.49809 * 15 13 12 17 17 C 1.38230 * 120.05052 * 179.97438 * 16 15 13 18 18 C 1.38454 * 120.02330 * 0.05339 * 17 16 15 19 19 F 1.35107 * 120.01375 * 179.97438 * 18 17 16 20 20 C 1.38442 * 119.97496 * 359.97254 * 18 17 16 21 21 C 1.38401 * 119.95107 * 359.72501 * 20 18 17 22 22 F 1.35092 * 120.01414 * 180.30465 * 21 20 18 23 23 C 1.53782 * 87.07978 * 25.43056 * 13 12 10 24 24 C 1.36414 * 105.61702 * 0.02562 * 6 5 4 25 25 O 1.33654 * 108.39353 * 359.97438 * 24 6 5 26 26 H 0.96699 * 113.99903 * 59.99982 * 1 2 3 27 27 H 1.09001 * 109.47000 * 119.99732 * 2 1 3 28 28 H 1.48496 * 110.00373 * 60.00289 * 3 2 1 29 29 H 1.48507 * 109.99617 * 181.31937 * 3 2 1 30 30 H 1.08000 * 127.01954 * 0.06587 * 5 4 2 31 31 H 0.96996 * 120.00072 * 359.97438 * 9 7 6 32 32 H 1.09004 * 113.61483 * 203.66363 * 12 10 9 33 33 H 1.08992 * 113.61493 * 334.56666 * 12 10 9 34 34 H 1.08002 * 119.97852 * 359.97438 * 16 15 13 35 35 H 1.08000 * 119.98913 * 180.02562 * 17 16 15 36 36 H 1.07999 * 120.02365 * 180.02562 * 20 18 17 37 37 H 1.08990 * 113.61533 * 220.02257 * 23 13 12 38 38 H 1.09004 * 113.61042 * 89.12156 * 23 13 12 39 39 H 1.08003 * 125.80741 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.6753 -1.9881 -1.5501 6 6 2.3690 -2.2331 -2.8229 7 6 2.3984 -3.4886 -3.5943 8 8 1.8023 -4.4670 -3.1865 9 7 3.0860 -3.5524 -4.7518 10 6 3.1148 -4.8002 -5.5188 11 1 2.9495 -5.6818 -4.8993 12 6 2.2434 -4.7650 -6.7854 13 6 3.4812 -4.2205 -7.5234 14 1 3.5609 -3.1337 -7.5018 15 6 3.6601 -4.7929 -8.9060 16 6 3.3614 -6.1202 -9.1479 17 6 3.5245 -6.6465 -10.4156 18 6 3.9885 -5.8444 -11.4443 19 9 4.1484 -6.3591 -12.6832 20 6 4.2886 -4.5146 -11.2029 21 6 4.1190 -3.9871 -9.9347 22 9 4.4056 -2.6881 -9.6992 23 6 4.3316 -4.9221 -6.4513 24 6 2.9808 -1.0558 -3.1403 25 8 2.7070 -0.1663 -2.1810 26 1 -0.3933 0.4417 -0.7650 27 1 1.7923 -0.5138 0.8900 28 1 1.5615 2.4679 1.2085 29 1 3.5346 1.7703 -0.0321 30 1 1.0806 -2.6926 -0.9876 31 1 3.5612 -2.7719 -5.0773 32 1 1.9301 -5.7515 -7.1274 33 1 1.4192 -4.0541 -6.7287 34 1 3.0001 -6.7469 -8.3459 35 1 3.2903 -7.6839 -10.6037 36 1 4.6503 -3.8881 -12.0048 37 1 5.1919 -4.3378 -6.1252 38 1 4.5881 -5.9513 -6.7022 39 1 3.5831 -0.8732 -4.0179 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_13456056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:58 Heat of formation + Delta-G solvation = -79.057843 kcal Electronic energy + Delta-G solvation = -27414.380210 eV Core-core repulsion = 22927.566247 eV Total energy + Delta-G solvation = -4486.813963 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.101 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.06255 -50.03730 -43.72291 -41.49685 -40.12334 -38.64423 -38.00663 -34.82365 -33.79882 -32.05653 -31.78167 -31.19076 -26.94264 -26.72472 -26.26652 -24.95276 -24.11832 -22.81913 -22.31457 -21.12649 -20.31352 -19.39867 -19.21309 -18.23316 -17.77098 -17.66994 -17.49453 -17.04102 -17.00212 -16.87761 -16.61075 -16.36448 -16.14611 -15.97207 -15.63502 -15.51295 -15.23997 -15.17456 -14.62512 -14.25401 -14.03132 -14.00583 -13.77108 -13.62996 -13.48310 -13.43869 -12.84241 -12.81855 -12.55625 -12.21888 -12.05666 -11.73911 -11.32516 -11.24748 -10.96697 -10.64216 -10.18872 -10.08265 -9.77856 -9.58968 -4.97952 -0.12127 -0.02694 0.25631 0.81418 1.18919 1.50938 1.82103 1.94071 2.01257 2.22395 2.28930 2.82915 3.29476 3.30445 3.45258 3.47510 3.50543 3.59676 3.65554 3.68386 3.87169 3.93819 3.97603 4.08776 4.18078 4.27672 4.38442 4.51258 4.61899 4.70436 4.74864 4.83800 4.84970 4.89757 4.91415 4.91958 5.01459 5.08470 5.11679 5.12725 5.26837 5.56598 5.73249 5.83414 6.45127 6.62942 7.13345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.037 4.037 3 Si 0.798 3.202 4 C -0.053 4.053 5 C -0.152 4.152 6 C -0.269 4.269 7 C 0.590 3.410 8 O -0.583 6.583 9 N -0.694 5.694 10 C 0.114 3.886 11 H 0.090 0.910 12 C -0.139 4.139 13 C -0.070 4.070 14 H 0.108 0.892 15 C -0.111 4.111 16 C -0.056 4.056 17 C -0.156 4.156 18 C 0.107 3.893 19 F -0.143 7.143 20 C -0.199 4.199 21 C 0.118 3.882 22 F -0.135 7.135 23 C -0.121 4.121 24 C 0.066 3.934 25 O -0.164 6.164 26 H 0.400 0.600 27 H 0.130 0.870 28 H -0.285 1.285 29 H -0.287 1.287 30 H 0.143 0.857 31 H 0.415 0.585 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.170 0.830 35 H 0.161 0.839 36 H 0.151 0.849 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.013 3.233 -2.781 4.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.146 4.146 3 Si 0.701 3.299 4 C -0.101 4.101 5 C -0.171 4.171 6 C -0.273 4.273 7 C 0.379 3.621 8 O -0.464 6.464 9 N -0.346 5.346 10 C 0.009 3.991 11 H 0.108 0.892 12 C -0.178 4.178 13 C -0.088 4.088 14 H 0.126 0.874 15 C -0.112 4.112 16 C -0.074 4.074 17 C -0.175 4.175 18 C 0.087 3.913 19 F -0.122 7.122 20 C -0.218 4.218 21 C 0.099 3.901 22 F -0.114 7.114 23 C -0.159 4.159 24 C -0.005 4.005 25 O -0.060 6.060 26 H 0.251 0.749 27 H 0.147 0.853 28 H -0.212 1.212 29 H -0.214 1.214 30 H 0.161 0.839 31 H 0.253 0.747 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.187 0.813 35 H 0.178 0.822 36 H 0.169 0.831 37 H 0.108 0.892 38 H 0.130 0.870 39 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 2.260 3.148 -1.550 4.174 hybrid contribution 0.240 -0.542 -0.415 0.724 sum 2.499 2.606 -1.966 4.111 Atomic orbital electron populations 1.86543 1.16202 1.82240 1.50340 1.24657 0.85320 1.12163 0.92432 0.93186 0.77846 0.73856 0.84995 1.22773 0.99513 0.93668 0.94146 1.22549 1.02252 0.96079 0.96268 1.21466 1.09908 0.95886 1.00066 1.17477 0.77839 0.86395 0.80362 1.90792 1.46278 1.38686 1.70659 1.45359 1.52276 1.15174 1.21774 1.21884 0.97997 0.87351 0.91878 0.89198 1.23641 0.96424 1.03115 0.94571 1.21602 0.97798 1.00764 0.88641 0.87388 1.19969 1.01609 0.94431 0.95234 1.21068 0.95906 0.93671 0.96762 1.21513 1.01797 1.01936 0.92216 1.17578 1.01243 0.91940 0.80515 1.91526 1.93326 1.87095 1.40203 1.21175 1.06898 0.95695 0.98054 1.17277 1.00664 0.78812 0.93366 1.91500 1.91107 1.33831 1.94961 1.23412 0.96355 1.03154 0.92996 1.25307 0.97199 0.85319 0.92644 1.83716 1.54203 1.40121 1.27927 0.74895 0.85316 1.21230 1.21391 0.83867 0.74694 0.87366 0.91280 0.81250 0.82178 0.83135 0.89233 0.87027 0.72229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.48 12.86 -148.98 -1.92 -1.44 16 2 C -0.04 0.06 2.97 71.24 0.21 0.27 16 3 Si 0.80 -2.99 32.09 68.60 2.20 -0.78 16 4 C -0.05 -0.01 6.20 24.76 0.15 0.14 16 5 C -0.15 -0.70 10.88 23.64 0.26 -0.44 16 6 C -0.27 -0.41 6.31 -18.99 -0.12 -0.53 16 7 C 0.59 2.69 7.81 86.65 0.68 3.36 16 8 O -0.58 -8.52 16.60 -4.08 -0.07 -8.59 16 9 N -0.69 2.72 5.26 -443.33 -2.33 0.39 16 10 C 0.11 -0.46 4.29 45.52 0.20 -0.26 16 11 H 0.09 0.04 7.50 -2.38 -0.02 0.03 16 12 C -0.14 0.77 7.27 31.21 0.23 1.00 16 13 C -0.07 0.48 3.79 -10.92 -0.04 0.44 16 14 H 0.11 -0.81 7.44 -2.39 -0.02 -0.83 16 15 C -0.11 0.45 5.30 -19.81 -0.10 0.35 16 16 C -0.06 0.34 8.61 22.26 0.19 0.53 16 17 C -0.16 0.57 10.03 22.32 0.22 0.79 16 18 C 0.11 0.08 7.30 22.37 0.16 0.24 16 19 F -0.14 -0.57 17.27 44.97 0.78 0.21 16 20 C -0.20 -0.09 10.01 22.36 0.22 0.14 16 21 C 0.12 -0.05 7.24 22.37 0.16 0.11 16 22 F -0.14 -0.13 16.36 44.97 0.74 0.61 16 23 C -0.12 1.01 7.29 31.12 0.23 1.24 16 24 C 0.07 -0.42 11.61 67.39 0.78 0.37 16 25 O -0.16 0.50 8.89 4.45 0.04 0.54 16 26 H 0.40 -3.68 8.70 -74.06 -0.64 -4.33 16 27 H 0.13 -0.17 7.96 -2.39 -0.02 -0.19 16 28 H -0.29 -0.73 7.11 99.48 0.71 -0.02 16 29 H -0.29 -0.58 7.11 99.48 0.71 0.13 16 30 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 31 H 0.42 -4.63 7.67 -92.71 -0.71 -5.34 16 32 H 0.11 -0.82 6.32 -2.39 -0.02 -0.84 16 33 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.17 -1.90 6.66 -2.91 -0.02 -1.92 16 35 H 0.16 -1.15 8.06 -2.91 -0.02 -1.18 16 36 H 0.15 -0.15 8.06 -2.91 -0.02 -0.18 16 37 H 0.09 -0.86 8.14 -2.39 -0.02 -0.88 16 38 H 0.11 -1.09 7.72 -2.38 -0.02 -1.11 16 39 H 0.26 -4.56 7.47 -2.91 -0.02 -4.58 16 Total: 0.00 -24.42 348.35 2.69 -21.73 By element: Atomic # 1 Polarization: -20.22 SS G_CDS: -0.18 Total: -20.40 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 3.43 Total: 7.74 kcal Atomic # 7 Polarization: 2.72 SS G_CDS: -2.33 Total: 0.39 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -1.94 Total: -9.49 kcal Atomic # 9 Polarization: -0.70 SS G_CDS: 1.51 Total: 0.81 kcal Atomic # 14 Polarization: -2.99 SS G_CDS: 2.20 Total: -0.78 kcal Total: -24.42 2.69 -21.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_13456056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.324 kcal (2) G-P(sol) polarization free energy of solvation -24.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds