Wall clock time and date at job start Sun Mar 7 2021 00:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37869 * 126.45596 * 2 1 4 4 C 1.46673 * 126.23644 * 0.04007 * 3 2 1 5 5 O 1.21697 * 119.99843 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99929 * 179.97438 * 4 3 2 7 7 C 1.46501 * 119.99508 * 179.97438 * 6 4 3 8 8 H 1.09000 * 112.85081 * 23.80605 * 7 6 4 9 9 C 1.53779 * 113.61128 * 154.99987 * 7 6 4 10 10 C 1.53783 * 87.08448 * 89.19793 * 9 7 6 11 11 H 1.08996 * 113.61495 * 270.80550 * 10 9 7 12 12 C 1.50698 * 113.61655 * 139.97989 * 10 9 7 13 13 C 1.38443 * 119.98736 * 120.00471 * 12 10 9 14 14 F 1.35097 * 120.01320 * 0.02562 * 13 12 10 15 15 C 1.38441 * 119.97369 * 180.02562 * 13 12 10 16 16 C 1.38395 * 119.95125 * 0.02562 * 15 13 12 17 17 F 1.35099 * 120.01356 * 180.02562 * 16 15 13 18 18 C 1.38497 * 119.97503 * 359.97438 * 16 15 13 19 19 C 1.38183 * 120.02410 * 0.26179 * 18 16 15 20 20 C 1.53779 * 113.68978 * 252.53329 * 7 6 4 21 21 N 1.37651 * 107.52995 * 180.29335 * 3 2 1 22 22 C 1.35537 * 108.64586 * 359.57291 * 21 3 2 23 23 C 1.50700 * 125.56604 * 180.13025 * 22 21 3 24 24 O 1.42902 * 109.47124 * 300.32755 * 23 22 21 25 25 Si 1.86293 * 109.47123 * 180.32943 * 23 22 21 26 26 C 1.35447 * 108.86893 * 0.43572 * 22 21 3 27 27 H 1.08998 * 109.46601 * 89.99609 * 1 2 3 28 28 H 1.08999 * 109.47077 * 209.99390 * 1 2 3 29 29 H 1.08995 * 109.47185 * 330.00025 * 1 2 3 30 30 H 0.96997 * 119.99864 * 359.97438 * 6 4 3 31 31 H 1.09005 * 113.61805 * 334.65006 * 9 7 6 32 32 H 1.08999 * 113.69145 * 203.76022 * 9 7 6 33 33 H 1.08001 * 120.02402 * 180.02562 * 15 13 12 34 34 H 1.08002 * 119.98574 * 179.97438 * 18 16 15 35 35 H 1.07995 * 119.97787 * 179.74752 * 19 18 16 36 36 H 1.09000 * 113.61497 * 156.32789 * 20 7 6 37 37 H 1.09003 * 113.61449 * 25.42400 * 20 7 6 38 38 H 0.97003 * 125.68116 * 179.69768 * 21 3 2 39 39 H 1.09003 * 109.47242 * 60.32342 * 23 22 21 40 40 H 0.96704 * 114.00224 * 299.99986 * 24 23 22 41 41 H 1.48500 * 110.00405 * 58.68055 * 25 23 22 42 42 H 1.48500 * 110.00078 * 180.02562 * 25 23 22 43 43 H 1.08005 * 126.07033 * 179.69771 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3263 1.1089 0.0000 4 6 1.8899 2.5092 0.0008 5 8 0.7027 2.7766 0.0011 6 7 2.8038 3.4998 0.0012 7 6 2.3679 4.8985 0.0015 8 1 1.3645 5.0290 0.4068 9 6 3.4037 5.8664 0.5974 10 6 3.9842 5.9941 -0.8209 11 1 4.7519 5.2541 -1.0467 12 6 4.4008 7.3975 -1.1785 13 6 5.7178 7.6646 -1.5117 14 9 6.6291 6.6674 -1.5168 15 6 6.1003 8.9541 -1.8397 16 6 5.1657 9.9748 -1.8336 17 9 5.5376 11.2335 -2.1540 18 6 3.8489 9.7052 -1.4999 19 6 3.4692 8.4187 -1.1680 20 6 2.5878 5.6145 -1.3416 21 7 3.6284 0.6624 -0.0067 22 6 3.6218 -0.6929 -0.0012 23 6 4.8434 -1.5754 -0.0029 24 8 5.6229 -1.3076 -1.1702 25 14 4.3182 -3.3628 -0.0036 26 6 2.3380 -1.1247 -0.0009 27 1 -0.3632 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3633 0.8899 0.5138 30 1 3.7501 3.2867 0.0014 31 1 4.0841 5.3953 1.3069 32 1 2.9707 6.7919 0.9770 33 1 7.1274 9.1633 -2.1002 34 1 3.1195 10.5017 -1.4947 35 1 2.4430 8.2101 -0.9040 36 1 1.9305 6.4707 -1.4927 37 1 2.6095 4.9399 -2.1975 38 1 4.4191 1.2243 -0.0124 39 1 5.4397 -1.3722 0.8866 40 1 5.1546 -1.4671 -2.0011 41 1 3.4780 -3.6449 -1.1951 42 1 5.5139 -4.2435 -0.0046 43 1 2.0136 -2.1549 -0.0017 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_13940406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:08:01 Heat of formation + Delta-G solvation = -58.640549 kcal Electronic energy + Delta-G solvation = -29708.764060 eV Core-core repulsion = 25165.016501 eV Total energy + Delta-G solvation = -4543.747559 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.128 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.12237 -50.07466 -42.63324 -41.41560 -40.02977 -38.68968 -37.84547 -34.88624 -33.45113 -32.07609 -31.79706 -31.18340 -28.19993 -27.24296 -26.77494 -25.93948 -24.33447 -23.25193 -22.59432 -21.59459 -20.66157 -20.17380 -19.61257 -19.31756 -18.32326 -18.14671 -17.41027 -17.09102 -16.93635 -16.74529 -16.66687 -16.41224 -16.34489 -16.05500 -15.57569 -15.48244 -15.35434 -15.25732 -14.91813 -14.64966 -14.31727 -14.02260 -13.90182 -13.75861 -13.63840 -13.56291 -13.55458 -13.47546 -12.98931 -12.87256 -12.59679 -12.28423 -12.09801 -11.87021 -11.78591 -11.36766 -11.18120 -10.83505 -10.26673 -10.12821 -9.83055 -9.63647 -9.20584 -4.84175 -0.16346 -0.06857 0.28808 1.21690 1.53489 1.69367 1.88029 1.97503 2.21143 2.22478 2.25405 2.78636 3.25247 3.33183 3.40550 3.44538 3.55611 3.59510 3.63226 3.77491 3.83855 3.90090 4.02601 4.12754 4.14331 4.23038 4.49185 4.55509 4.65318 4.70082 4.72089 4.78253 4.79677 4.83137 4.85280 4.87610 4.91459 4.95679 5.04115 5.06011 5.16399 5.21073 5.35223 5.50079 5.63109 5.69128 5.85352 6.27967 6.38377 6.44937 7.04576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.084 4.084 3 C -0.071 4.071 4 C 0.591 3.409 5 O -0.557 6.557 6 N -0.704 5.704 7 C 0.117 3.883 8 H 0.100 0.900 9 C -0.122 4.122 10 C -0.072 4.072 11 H 0.099 0.901 12 C -0.112 4.112 13 C 0.114 3.886 14 F -0.139 7.139 15 C -0.199 4.199 16 C 0.108 3.892 17 F -0.142 7.142 18 C -0.154 4.154 19 C -0.055 4.055 20 C -0.138 4.138 21 N -0.515 5.515 22 C 0.036 3.964 23 C -0.063 4.063 24 O -0.549 6.549 25 Si 0.794 3.206 26 C -0.207 4.207 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.406 0.594 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.150 0.850 34 H 0.163 0.837 35 H 0.173 0.827 36 H 0.113 0.887 37 H 0.065 0.935 38 H 0.426 0.574 39 H 0.135 0.865 40 H 0.389 0.611 41 H -0.283 1.283 42 H -0.298 1.298 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.151 -1.123 2.717 2.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.184 4.184 4 C 0.380 3.620 5 O -0.436 6.436 6 N -0.355 5.355 7 C 0.012 3.988 8 H 0.118 0.882 9 C -0.160 4.160 10 C -0.091 4.091 11 H 0.117 0.883 12 C -0.113 4.113 13 C 0.095 3.905 14 F -0.117 7.117 15 C -0.218 4.218 16 C 0.088 3.912 17 F -0.121 7.121 18 C -0.172 4.172 19 C -0.072 4.072 20 C -0.176 4.176 21 N -0.112 5.112 22 C -0.083 4.083 23 C -0.172 4.172 24 O -0.357 6.357 25 Si 0.698 3.302 26 C -0.231 4.231 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.242 0.758 31 H 0.102 0.898 32 H 0.134 0.866 33 H 0.168 0.832 34 H 0.181 0.819 35 H 0.190 0.810 36 H 0.131 0.869 37 H 0.084 0.916 38 H 0.266 0.734 39 H 0.153 0.847 40 H 0.239 0.761 41 H -0.209 1.209 42 H -0.226 1.226 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.351 -1.346 2.726 3.060 hybrid contribution 1.675 0.943 -1.458 2.413 sum 1.325 -0.403 1.267 1.877 Atomic orbital electron populations 1.20347 0.89076 1.03141 1.02213 1.20179 0.96357 0.91231 1.01558 1.20152 0.84434 0.93161 1.20647 1.17158 0.85599 0.83587 0.75621 1.90820 1.17387 1.83674 1.51707 1.45480 1.09469 1.05483 1.75072 1.21891 0.99819 0.79502 0.97616 0.88237 1.23430 0.97223 1.00166 0.95188 1.21533 0.97694 0.91980 0.97872 0.88301 1.19962 0.91268 0.97715 1.02356 1.17321 0.86926 0.84362 1.01881 1.91496 1.66322 1.59786 1.94106 1.21166 1.02074 0.91637 1.06946 1.17570 0.93900 0.78954 1.00740 1.91527 1.92282 1.37952 1.90291 1.21531 0.94346 0.99598 1.01766 1.21080 1.00812 0.89861 0.95490 1.23598 0.95600 1.01146 0.97262 1.41821 1.06829 1.06749 1.55802 1.21214 0.96992 0.83335 1.06761 1.25085 0.91508 1.09068 0.91532 1.86580 1.42740 1.89637 1.16710 0.93304 0.78948 0.70203 0.87784 1.20830 0.90842 0.99582 1.11836 0.91691 0.89958 0.91832 0.75823 0.89807 0.86606 0.83203 0.81910 0.80973 0.86881 0.91609 0.73403 0.84727 0.76117 1.20901 1.22628 0.81604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.35 9.83 71.24 0.70 0.35 16 2 C -0.08 -0.33 6.21 -19.56 -0.12 -0.45 16 3 C -0.07 -0.21 7.06 40.35 0.28 0.08 16 4 C 0.59 2.71 7.79 86.45 0.67 3.39 16 5 O -0.56 -6.48 14.40 -4.34 -0.06 -6.54 16 6 N -0.70 1.61 5.26 -444.00 -2.34 -0.72 16 7 C 0.12 -0.41 4.32 45.52 0.20 -0.22 16 8 H 0.10 -0.04 7.46 -2.39 -0.02 -0.06 16 9 C -0.12 0.88 7.29 31.12 0.23 1.11 16 10 C -0.07 0.38 3.78 -11.01 -0.04 0.34 16 11 H 0.10 -0.44 7.44 -2.39 -0.02 -0.46 16 12 C -0.11 0.32 5.30 -19.82 -0.10 0.22 16 13 C 0.11 0.12 7.24 22.37 0.16 0.28 16 14 F -0.14 -0.44 16.36 44.97 0.74 0.30 16 15 C -0.20 -0.29 10.01 22.36 0.22 -0.07 16 16 C 0.11 0.13 7.30 22.37 0.16 0.30 16 17 F -0.14 -0.62 17.27 44.97 0.78 0.16 16 18 C -0.15 0.52 10.02 22.32 0.22 0.75 16 19 C -0.05 0.31 8.59 22.26 0.19 0.50 16 20 C -0.14 0.66 7.26 31.12 0.23 0.89 16 21 N -0.51 1.23 5.99 -171.94 -1.03 0.20 16 22 C 0.04 -0.08 6.47 41.34 0.27 0.19 16 23 C -0.06 0.29 3.08 71.24 0.22 0.51 16 24 O -0.55 1.02 12.88 -148.98 -1.92 -0.90 16 25 Si 0.79 -3.89 30.54 68.60 2.10 -1.80 16 26 C -0.21 0.07 9.27 22.01 0.20 0.27 16 27 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.08 -0.01 8.14 -2.39 -0.02 -0.03 16 29 H 0.06 0.49 6.48 -2.39 -0.02 0.47 16 30 H 0.41 -2.88 7.83 -92.71 -0.73 -3.60 16 31 H 0.08 -0.63 8.14 -2.38 -0.02 -0.65 16 32 H 0.12 -1.09 7.71 -2.39 -0.02 -1.10 16 33 H 0.15 0.02 8.06 -2.91 -0.02 -0.01 16 34 H 0.16 -1.20 8.06 -2.91 -0.02 -1.22 16 35 H 0.17 -1.95 6.67 -2.91 -0.02 -1.97 16 36 H 0.11 -0.87 6.32 -2.39 -0.02 -0.88 16 37 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 38 H 0.43 -3.05 8.19 -92.71 -0.76 -3.81 16 39 H 0.14 -0.98 7.96 -2.39 -0.02 -1.00 16 40 H 0.39 -2.46 8.70 -74.05 -0.64 -3.11 16 41 H -0.28 0.04 7.11 99.48 0.71 0.75 16 42 H -0.30 -0.74 7.11 99.48 0.71 -0.03 16 43 H 0.17 -0.74 6.17 -2.91 -0.02 -0.75 16 Total: 0.00 -19.20 367.36 0.97 -18.22 By element: Atomic # 1 Polarization: -16.39 SS G_CDS: -0.98 Total: -17.37 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 3.69 Total: 8.44 kcal Atomic # 7 Polarization: 2.85 SS G_CDS: -3.37 Total: -0.52 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -1.98 Total: -7.44 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 1.51 Total: 0.46 kcal Atomic # 14 Polarization: -3.89 SS G_CDS: 2.10 Total: -1.80 kcal Total: -19.20 0.97 -18.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_13940406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.416 kcal (2) G-P(sol) polarization free energy of solvation -19.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds