Wall clock time and date at job start Sun Mar 7 2021 00:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86305 * 109.46676 * 2 1 4 4 C 1.50699 * 109.47057 * 119.99533 * 2 1 3 5 5 C 1.34848 * 125.89326 * 244.97271 * 4 2 1 6 6 C 1.40893 * 107.41713 * 180.02562 * 5 4 2 7 7 C 1.34847 * 107.41636 * 0.02562 * 6 5 4 8 8 C 1.50706 * 125.88682 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47294 * 85.02354 * 8 7 6 10 10 O 1.21282 * 120.00025 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00035 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99846 * 179.97438 * 11 9 8 13 13 H 1.09000 * 112.85624 * 336.19226 * 12 11 9 14 14 C 1.53782 * 113.61524 * 107.50022 * 12 11 9 15 15 C 1.53785 * 87.08211 * 89.11527 * 14 12 11 16 16 H 1.09001 * 113.61140 * 270.88764 * 15 14 12 17 17 C 1.50693 * 113.69232 * 139.99518 * 15 14 12 18 18 C 1.38189 * 119.98591 * 322.46077 * 17 15 14 19 19 C 1.38235 * 120.04851 * 179.97438 * 18 17 15 20 20 C 1.38447 * 120.02738 * 359.97438 * 19 18 17 21 21 F 1.35101 * 120.01474 * 179.97438 * 20 19 18 22 22 C 1.38442 * 119.97181 * 0.02562 * 20 19 18 23 23 C 1.38392 * 119.95298 * 359.75703 * 22 20 19 24 24 F 1.35102 * 120.01539 * 180.23267 * 23 22 20 25 25 C 1.53785 * 113.61452 * 204.99807 * 12 11 9 26 26 N 1.36342 * 108.22125 * 0.25992 * 7 6 5 27 27 H 0.96703 * 113.99791 * 299.99637 * 1 2 3 28 28 H 1.08990 * 109.46934 * 239.99770 * 2 1 3 29 29 H 1.48504 * 109.99311 * 178.68359 * 3 2 1 30 30 H 1.48496 * 109.99961 * 299.99845 * 3 2 1 31 31 H 1.08001 * 126.29218 * 0.02562 * 5 4 2 32 32 H 1.08000 * 126.29104 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.46953 * 205.01797 * 8 7 6 34 34 H 1.09000 * 109.47318 * 325.01394 * 8 7 6 35 35 H 0.97002 * 119.99767 * 359.97438 * 11 9 8 36 36 H 1.08996 * 113.61532 * 203.66298 * 14 12 11 37 37 H 1.09001 * 113.61507 * 334.56982 * 14 12 11 38 38 H 1.07995 * 119.97757 * 359.97438 * 18 17 15 39 39 H 1.08004 * 119.98501 * 180.02562 * 19 18 17 40 40 H 1.08002 * 120.01867 * 179.97438 * 22 20 19 41 41 H 1.08994 * 113.61299 * 25.42820 * 25 12 11 42 42 H 1.08993 * 113.61788 * 156.33802 * 25 12 11 43 43 H 0.97000 * 125.63933 * 179.74575 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.6306 -0.1487 2.2375 6 6 2.8984 -1.1605 3.1806 7 6 2.3531 -2.3020 2.7137 8 6 2.3936 -3.6445 3.3973 9 6 1.2613 -3.7385 4.3873 10 8 0.4970 -2.8069 4.5247 11 7 1.0986 -4.8574 5.1209 12 6 -0.0018 -4.9485 6.0836 13 1 -0.3506 -3.9726 6.4215 14 6 -1.1340 -5.8890 5.6380 15 6 -0.3607 -7.0215 6.3339 16 1 0.3600 -7.5205 5.6859 17 6 -1.2437 -7.9880 7.0804 18 6 -2.3541 -7.5251 7.7603 19 6 -3.1653 -8.4106 8.4451 20 6 -2.8663 -9.7624 8.4499 21 9 -3.6589 -10.6274 9.1197 22 6 -1.7540 -10.2271 7.7691 23 6 -0.9451 -9.3404 7.0801 24 9 0.1379 -9.7932 6.4114 25 6 0.2631 -5.9386 7.2301 26 7 1.7635 -2.0333 1.5142 27 1 -0.3933 0.4417 0.7651 28 1 1.7923 -0.5138 -0.8899 29 1 3.5345 1.7703 0.0321 30 1 1.5614 2.4679 -1.2085 31 1 2.9302 0.8866 2.3081 32 1 3.4408 -1.0434 4.1072 33 1 2.2919 -4.4344 2.6531 34 1 3.3435 -3.7578 3.9198 35 1 1.7101 -5.6023 5.0112 36 1 -2.0946 -5.6666 6.1026 37 1 -1.2029 -6.0076 4.5567 38 1 -2.5884 -6.4709 7.7568 39 1 -4.0331 -8.0478 8.9758 40 1 -1.5198 -11.2814 7.7727 41 1 1.3220 -6.0973 7.4340 42 1 -0.3155 -5.7299 8.1298 43 1 1.2986 -2.6764 0.9562 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_14644196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:08:06 Heat of formation + Delta-G solvation = -56.997082 kcal Electronic energy + Delta-G solvation = -29093.139910 eV Core-core repulsion = 24549.463617 eV Total energy + Delta-G solvation = -4543.676293 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.128 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -50.08360 -50.05376 -42.32811 -41.44505 -40.12329 -38.66758 -37.68029 -34.57330 -33.05905 -31.92437 -31.87706 -31.41020 -29.33734 -26.71382 -26.27755 -25.14895 -24.24860 -22.96735 -22.12272 -21.34365 -20.99842 -20.23740 -19.35542 -18.90458 -18.36708 -18.11359 -17.27748 -17.07622 -17.05838 -16.81664 -16.52607 -16.38910 -16.30956 -16.16033 -15.54256 -15.38913 -15.24471 -15.18827 -14.77427 -14.56976 -14.21463 -14.16490 -13.97655 -13.88981 -13.76136 -13.58705 -13.50220 -13.35657 -12.88422 -12.67436 -12.56725 -12.10892 -12.03268 -11.98707 -11.71106 -11.30387 -10.96685 -10.62837 -10.13503 -10.03567 -9.78453 -9.60342 -8.95304 -4.93014 -0.13602 -0.04478 1.11947 1.29497 1.62610 1.69125 1.89395 1.92576 2.27108 2.30495 2.52196 2.81254 3.30199 3.44978 3.48848 3.51557 3.65140 3.68356 3.69804 3.82123 3.87128 3.93411 4.04662 4.07976 4.17570 4.21783 4.37623 4.50508 4.61354 4.64048 4.70345 4.74648 4.81241 4.82972 4.86296 4.90716 4.93352 5.00978 5.07196 5.13586 5.26989 5.28487 5.30586 5.62740 5.71719 6.01412 6.14937 6.53302 6.65915 6.68134 7.27584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.055 4.055 3 Si 0.802 3.198 4 C -0.022 4.022 5 C -0.201 4.201 6 C -0.199 4.199 7 C 0.032 3.968 8 C -0.069 4.069 9 C 0.515 3.485 10 O -0.571 6.571 11 N -0.704 5.704 12 C 0.117 3.883 13 H 0.090 0.910 14 C -0.139 4.139 15 C -0.071 4.071 16 H 0.104 0.896 17 C -0.112 4.112 18 C -0.056 4.056 19 C -0.155 4.155 20 C 0.107 3.893 21 F -0.142 7.142 22 C -0.199 4.199 23 C 0.116 3.884 24 F -0.137 7.137 25 C -0.123 4.123 26 N -0.538 5.538 27 H 0.395 0.605 28 H 0.106 0.894 29 H -0.285 1.285 30 H -0.294 1.294 31 H 0.154 0.846 32 H 0.142 0.858 33 H 0.125 0.875 34 H 0.143 0.857 35 H 0.416 0.584 36 H 0.106 0.894 37 H 0.067 0.933 38 H 0.171 0.829 39 H 0.162 0.838 40 H 0.150 0.850 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.478 -0.746 2.470 2.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.164 4.164 3 Si 0.706 3.294 4 C -0.136 4.136 5 C -0.226 4.226 6 C -0.224 4.224 7 C -0.082 4.082 8 C -0.109 4.109 9 C 0.302 3.698 10 O -0.449 6.449 11 N -0.356 5.356 12 C 0.011 3.989 13 H 0.108 0.892 14 C -0.177 4.177 15 C -0.089 4.089 16 H 0.122 0.878 17 C -0.113 4.113 18 C -0.074 4.074 19 C -0.174 4.174 20 C 0.087 3.913 21 F -0.121 7.121 22 C -0.218 4.218 23 C 0.097 3.903 24 F -0.115 7.115 25 C -0.161 4.161 26 N -0.134 5.134 27 H 0.245 0.755 28 H 0.123 0.877 29 H -0.212 1.212 30 H -0.221 1.221 31 H 0.171 0.829 32 H 0.160 0.840 33 H 0.143 0.857 34 H 0.161 0.839 35 H 0.253 0.747 36 H 0.124 0.876 37 H 0.085 0.915 38 H 0.188 0.812 39 H 0.179 0.821 40 H 0.168 0.832 41 H 0.105 0.895 42 H 0.127 0.873 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 1.437 0.029 1.504 2.080 hybrid contribution 0.092 -1.968 -0.477 2.027 sum 1.529 -1.939 1.027 2.674 Atomic orbital electron populations 1.86432 1.17625 1.82286 1.50521 1.24972 0.84887 1.11443 0.95094 0.92926 0.77718 0.74380 0.84348 1.20995 1.07492 0.84765 1.00318 1.20927 1.05709 1.00294 0.95637 1.20857 1.07645 0.92387 1.01502 1.19920 1.02726 0.96986 0.88560 1.20251 0.99410 0.93632 0.97575 1.20943 0.85768 0.81738 0.81347 1.90752 1.47073 1.39056 1.68010 1.45598 1.31718 1.17991 1.40304 1.21800 0.87859 0.99238 0.89970 0.89207 1.23580 0.98720 0.94307 1.01138 1.21543 0.97084 0.92839 0.97452 0.87760 1.19993 0.98430 0.91700 1.01154 1.21067 0.91537 1.01506 0.93269 1.21520 1.02887 0.90607 1.02370 1.17568 0.90271 0.88161 0.95263 1.91525 1.72633 1.69773 1.78177 1.21170 0.96498 1.02132 1.02025 1.17302 0.85492 0.92235 0.95287 1.91502 1.52199 1.89725 1.78114 1.23409 1.02883 0.92771 0.97042 1.41907 1.44212 1.09159 1.18079 0.75486 0.87659 1.21163 1.22133 0.82883 0.84041 0.85668 0.83938 0.74674 0.87599 0.91452 0.81213 0.82076 0.83178 0.89502 0.87267 0.74504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.45 12.88 -148.98 -1.92 -3.37 16 2 C -0.05 -0.08 3.08 71.24 0.22 0.14 16 3 Si 0.80 -0.43 30.60 68.60 2.10 1.67 16 4 C -0.02 -0.08 6.50 41.08 0.27 0.19 16 5 C -0.20 -0.79 9.37 22.14 0.21 -0.58 16 6 C -0.20 -0.87 10.76 22.14 0.24 -0.63 16 7 C 0.03 0.06 5.66 41.08 0.23 0.30 16 8 C -0.07 0.37 6.24 29.10 0.18 0.55 16 9 C 0.51 -0.12 7.82 87.66 0.69 0.57 16 10 O -0.57 -5.67 15.63 -3.04 -0.05 -5.72 16 11 N -0.70 4.11 5.26 -440.04 -2.32 1.80 16 12 C 0.12 -0.56 4.32 45.52 0.20 -0.36 16 13 H 0.09 -0.03 7.46 -2.39 -0.02 -0.05 16 14 C -0.14 0.79 7.25 31.12 0.23 1.02 16 15 C -0.07 0.45 3.78 -11.01 -0.04 0.41 16 16 H 0.10 -0.65 7.44 -2.39 -0.02 -0.67 16 17 C -0.11 0.38 5.30 -19.82 -0.10 0.28 16 18 C -0.06 0.32 8.61 22.26 0.19 0.51 16 19 C -0.16 0.53 10.02 22.32 0.22 0.75 16 20 C 0.11 0.11 7.30 22.37 0.16 0.28 16 21 F -0.14 -0.60 17.27 44.97 0.78 0.18 16 22 C -0.20 -0.20 10.01 22.36 0.22 0.03 16 23 C 0.12 0.04 7.24 22.37 0.16 0.20 16 24 F -0.14 -0.29 16.36 44.97 0.74 0.45 16 25 C -0.12 0.99 7.29 31.12 0.23 1.21 16 26 N -0.54 -1.26 6.08 -171.11 -1.04 -2.30 16 27 H 0.40 -1.50 8.70 -74.06 -0.64 -2.15 16 28 H 0.11 0.17 7.96 -2.39 -0.02 0.15 16 29 H -0.29 -1.27 7.11 99.48 0.71 -0.56 16 30 H -0.29 -1.68 7.11 99.48 0.71 -0.98 16 31 H 0.15 0.01 6.24 -2.91 -0.02 -0.01 16 32 H 0.14 0.30 8.06 -2.91 -0.02 0.28 16 33 H 0.13 -1.31 8.14 -2.39 -0.02 -1.33 16 34 H 0.14 -1.47 8.14 -2.39 -0.02 -1.49 16 35 H 0.42 -4.81 8.70 -92.71 -0.81 -5.61 16 36 H 0.11 -0.80 6.32 -2.39 -0.02 -0.82 16 37 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 38 H 0.17 -1.86 6.66 -2.91 -0.02 -1.88 16 39 H 0.16 -1.15 8.06 -2.91 -0.02 -1.18 16 40 H 0.15 -0.06 8.06 -2.91 -0.02 -0.09 16 41 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 42 H 0.11 -1.02 7.72 -2.39 -0.02 -1.04 16 43 H 0.42 -0.37 8.96 -92.71 -0.83 -1.20 16 Total: 0.00 -22.75 371.77 0.65 -22.11 By element: Atomic # 1 Polarization: -18.51 SS G_CDS: -1.14 Total: -19.65 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 3.50 Total: 4.85 kcal Atomic # 7 Polarization: 2.85 SS G_CDS: -3.36 Total: -0.50 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -1.97 Total: -9.09 kcal Atomic # 9 Polarization: -0.89 SS G_CDS: 1.51 Total: 0.63 kcal Atomic # 14 Polarization: -0.43 SS G_CDS: 2.10 Total: 1.67 kcal Total: -22.75 0.65 -22.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_14644196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.892 kcal (2) G-P(sol) polarization free energy of solvation -22.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds