Wall clock time and date at job start Sun Mar 7 2021 00:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86304 * 109.46687 * 2 1 4 4 C 1.50707 * 109.46732 * 119.99117 * 2 1 3 5 5 C 1.31111 * 118.54806 * 250.00585 * 4 2 1 6 6 N 1.38925 * 121.84663 * 179.59906 * 5 4 2 7 7 C 1.47026 * 118.88519 * 13.29423 * 6 5 4 8 8 C 1.50705 * 109.87233 * 196.76824 * 7 6 5 9 9 O 1.21277 * 119.99844 * 18.23780 * 8 7 6 10 10 N 1.34779 * 119.99707 * 198.23512 * 8 7 6 11 11 C 1.46496 * 119.99639 * 179.97438 * 10 8 7 12 12 H 1.08999 * 112.85085 * 23.80737 * 11 10 8 13 13 C 1.53781 * 113.61419 * 155.00234 * 11 10 8 14 14 C 1.53773 * 87.08400 * 89.11576 * 13 11 10 15 15 H 1.08996 * 113.61590 * 270.80508 * 14 13 11 16 16 C 1.50697 * 113.61647 * 139.98280 * 14 13 11 17 17 C 1.38186 * 119.98624 * 299.99620 * 16 14 13 18 18 C 1.38233 * 120.05148 * 179.97438 * 17 16 14 19 19 C 1.38455 * 120.02327 * 359.97438 * 18 17 16 20 20 F 1.35101 * 120.01207 * 179.97438 * 19 18 17 21 21 C 1.38440 * 119.97626 * 359.97438 * 19 18 17 22 22 C 1.38403 * 119.94435 * 359.76790 * 21 19 18 23 23 F 1.35110 * 120.00904 * 180.22862 * 22 21 19 24 24 C 1.53779 * 113.61479 * 252.49737 * 11 10 8 25 25 C 1.53546 * 107.65374 * 316.33449 * 7 6 5 26 26 C 1.50202 * 118.54493 * 69.96740 * 4 2 1 27 27 H 0.96702 * 113.99281 * 60.01102 * 1 2 3 28 28 H 1.08992 * 109.47649 * 239.99593 * 2 1 3 29 29 H 1.48500 * 110.00048 * 298.67391 * 3 2 1 30 30 H 1.48492 * 110.00411 * 59.99587 * 3 2 1 31 31 H 1.08004 * 119.07364 * 359.57100 * 5 4 2 32 32 H 0.96999 * 120.55390 * 193.27021 * 6 5 4 33 33 H 1.09001 * 109.82458 * 75.87417 * 7 6 5 34 34 H 0.96993 * 120.00266 * 0.02562 * 10 8 7 35 35 H 1.08998 * 113.61749 * 203.66793 * 13 11 10 36 36 H 1.08996 * 113.61378 * 334.47801 * 13 11 10 37 37 H 1.08000 * 119.97888 * 359.97438 * 17 16 14 38 38 H 1.08001 * 119.98673 * 179.97438 * 18 17 16 39 39 H 1.07999 * 120.02522 * 180.02562 * 21 19 18 40 40 H 1.08998 * 113.61402 * 25.43644 * 24 11 10 41 41 H 1.09002 * 113.61516 * 156.33684 * 24 11 10 42 42 H 1.09006 * 109.61557 * 180.67505 * 25 7 6 43 43 H 1.09004 * 109.62390 * 301.22451 * 25 7 6 44 44 H 1.08997 * 109.31505 * 79.79734 * 26 4 2 45 45 H 1.09004 * 109.33923 * 320.32250 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2307 5 6 2.5114 -0.0026 2.1696 6 7 2.9920 -0.5855 3.3355 7 6 3.1170 -2.0490 3.3986 8 6 3.2515 -2.4904 4.8333 9 8 2.9207 -1.7446 5.7306 10 7 3.7392 -3.7139 5.1190 11 6 3.8704 -4.1426 6.5137 12 1 3.1963 -3.6109 7.1852 13 6 3.8417 -5.6696 6.6940 14 6 5.3673 -5.6420 6.5032 15 1 5.6790 -5.7343 5.4629 16 6 6.1076 -6.5802 7.4213 17 6 6.0024 -6.4321 8.7911 18 6 6.6805 -7.2922 9.6345 19 6 7.4654 -8.3037 9.1073 20 9 8.1283 -9.1439 9.9318 21 6 7.5706 -8.4537 7.7351 22 6 6.8870 -7.5952 6.8918 23 9 6.9851 -7.7433 5.5525 24 6 5.3254 -4.1904 7.0092 25 6 1.8449 -2.6519 2.7854 26 6 1.7443 -2.1975 1.3276 27 1 -0.3932 0.4416 -0.7652 28 1 1.7924 -0.5138 -0.8899 29 1 1.5879 2.4586 -1.2243 30 1 1.5613 2.4680 1.2083 31 1 2.6189 1.0633 2.0327 32 1 3.2413 -0.0360 4.0950 33 1 3.9896 -2.3704 2.8298 34 1 4.0041 -4.3102 4.4013 35 1 3.5318 -5.9859 7.6900 36 1 3.3103 -6.1931 5.8993 37 1 5.3901 -5.6436 9.2032 38 1 6.5979 -7.1752 10.7049 39 1 8.1823 -9.2426 7.3231 40 1 5.9931 -3.5199 6.4682 41 1 5.4212 -4.1023 8.0914 42 1 1.8988 -3.7398 2.8268 43 1 0.9720 -2.3046 3.3382 44 1 2.5147 -2.6967 0.7400 45 1 0.7638 -2.4645 0.9333 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_15413834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:08:10 Heat of formation + Delta-G solvation = -76.779514 kcal Electronic energy + Delta-G solvation = -30085.056580 eV Core-core repulsion = 25513.210977 eV Total energy + Delta-G solvation = -4571.845602 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.143 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -50.06184 -50.03897 -41.75211 -40.74110 -39.52257 -38.61778 -37.47369 -34.74499 -33.29074 -32.98970 -31.86738 -31.38026 -27.74292 -26.71277 -26.07341 -25.31887 -24.29595 -23.65183 -22.85183 -21.91173 -20.30701 -19.39559 -19.12422 -19.01923 -18.37060 -18.21517 -17.71055 -17.17638 -17.03974 -16.94334 -16.69374 -16.37937 -16.33655 -15.94590 -15.56402 -15.47117 -15.28872 -15.19017 -14.92663 -14.70809 -14.34618 -14.25247 -13.91726 -13.83968 -13.73433 -13.55252 -13.42182 -13.30817 -13.12039 -12.83097 -12.55980 -12.53563 -12.04571 -11.76166 -11.72339 -11.61982 -11.31349 -11.26321 -10.86648 -10.27419 -10.16091 -10.07436 -9.59058 -8.44080 -4.91425 -0.12153 -0.02938 1.31473 1.39180 1.45131 1.59507 1.88148 1.97541 2.28566 2.62913 2.82866 3.30819 3.45616 3.48685 3.53742 3.61644 3.66241 3.68808 3.76942 3.87930 3.94369 3.98845 4.06133 4.09116 4.18432 4.26784 4.47457 4.55884 4.61737 4.65644 4.70574 4.75169 4.79996 4.83895 4.86039 4.91485 4.92054 5.02136 5.05562 5.08625 5.12631 5.21826 5.26684 5.32337 5.56671 5.60395 5.73133 6.26315 6.46138 6.70151 6.81548 7.11347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.058 4.058 3 Si 0.743 3.257 4 C -0.246 4.246 5 C 0.136 3.864 6 N -0.737 5.737 7 C 0.138 3.862 8 C 0.517 3.483 9 O -0.573 6.573 10 N -0.695 5.695 11 C 0.115 3.885 12 H 0.091 0.909 13 C -0.124 4.124 14 C -0.071 4.071 15 H 0.106 0.894 16 C -0.111 4.111 17 C -0.056 4.056 18 C -0.156 4.156 19 C 0.106 3.894 20 F -0.143 7.143 21 C -0.199 4.199 22 C 0.117 3.883 23 F -0.136 7.136 24 C -0.137 4.137 25 C -0.122 4.122 26 C -0.054 4.054 27 H 0.387 0.613 28 H 0.085 0.915 29 H -0.295 1.295 30 H -0.306 1.306 31 H 0.137 0.863 32 H 0.407 0.593 33 H 0.121 0.879 34 H 0.418 0.582 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.171 0.829 38 H 0.161 0.839 39 H 0.150 0.850 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.047 0.953 44 H 0.089 0.911 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.843 -2.259 -1.817 4.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.169 4.169 3 Si 0.651 3.349 4 C -0.256 4.256 5 C 0.015 3.985 6 N -0.370 5.370 7 C 0.029 3.971 8 C 0.303 3.697 9 O -0.451 6.451 10 N -0.347 5.347 11 C 0.010 3.990 12 H 0.109 0.891 13 C -0.162 4.162 14 C -0.089 4.089 15 H 0.124 0.876 16 C -0.112 4.112 17 C -0.074 4.074 18 C -0.175 4.175 19 C 0.087 3.913 20 F -0.122 7.122 21 C -0.218 4.218 22 C 0.098 3.902 23 F -0.115 7.115 24 C -0.176 4.176 25 C -0.160 4.160 26 C -0.092 4.092 27 H 0.236 0.764 28 H 0.102 0.898 29 H -0.223 1.223 30 H -0.235 1.235 31 H 0.154 0.846 32 H 0.243 0.757 33 H 0.138 0.862 34 H 0.256 0.744 35 H 0.128 0.872 36 H 0.106 0.894 37 H 0.188 0.812 38 H 0.178 0.822 39 H 0.168 0.832 40 H 0.089 0.911 41 H 0.126 0.874 42 H 0.122 0.878 43 H 0.066 0.934 44 H 0.107 0.893 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.552 -1.407 -0.677 2.991 hybrid contribution -0.764 -0.311 -0.580 1.008 sum 1.788 -1.718 -1.257 2.780 Atomic orbital electron populations 1.86572 1.19921 1.80335 1.50571 1.24689 0.82993 1.09838 0.99333 0.94638 0.90999 0.73753 0.75473 1.20114 1.09815 0.96827 0.98838 1.20499 0.94645 0.96869 0.86508 1.44345 1.72705 1.04786 1.15137 1.21153 1.01032 0.82815 0.92067 1.20839 0.75796 0.81885 0.91143 1.90724 1.50510 1.54463 1.49426 1.45514 1.64303 1.16093 1.08741 1.21858 0.97841 0.96300 0.83038 0.89088 1.23418 0.94051 0.93936 1.04773 1.21552 0.95264 0.93400 0.98702 0.87566 1.19982 0.99159 0.96497 0.95603 1.21066 0.97170 0.98304 0.90840 1.21517 0.98088 0.94913 1.02935 1.17576 0.95425 0.91130 0.87160 1.91524 1.78939 1.69937 1.71752 1.21175 1.04857 1.03402 0.92407 1.17300 0.98982 0.96857 0.77078 1.91508 1.94799 1.95162 1.29999 1.23576 0.96330 0.94871 1.02795 1.21828 0.95562 1.01831 0.96818 1.20004 1.02420 0.91575 0.95158 0.76354 0.89755 1.22273 1.23504 0.84618 0.75666 0.86184 0.74442 0.87218 0.89448 0.81198 0.82155 0.83183 0.91059 0.87437 0.87774 0.93410 0.89291 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.49 12.86 -148.98 -1.92 -4.41 16 2 C -0.06 -0.04 2.80 71.24 0.20 0.16 16 3 Si 0.74 -0.13 29.91 68.60 2.05 1.92 16 4 C -0.25 -0.43 5.40 -16.75 -0.09 -0.52 16 5 C 0.14 0.23 9.62 83.42 0.80 1.03 16 6 N -0.74 -0.88 5.47 -328.99 -1.80 -2.68 16 7 C 0.14 -0.36 3.36 44.33 0.15 -0.21 16 8 C 0.52 0.08 7.10 87.66 0.62 0.71 16 9 O -0.57 -5.25 15.67 -3.02 -0.05 -5.30 16 10 N -0.69 4.16 5.26 -440.05 -2.32 1.85 16 11 C 0.12 -0.63 4.32 45.52 0.20 -0.43 16 12 H 0.09 -0.11 7.46 -2.39 -0.02 -0.12 16 13 C -0.12 1.07 7.29 31.12 0.23 1.29 16 14 C -0.07 0.50 3.78 -11.02 -0.04 0.46 16 15 H 0.11 -0.76 7.45 -2.39 -0.02 -0.78 16 16 C -0.11 0.45 5.29 -19.82 -0.10 0.35 16 17 C -0.06 0.35 8.61 22.26 0.19 0.54 16 18 C -0.16 0.58 10.03 22.32 0.22 0.81 16 19 C 0.11 0.08 7.30 22.37 0.16 0.24 16 20 F -0.14 -0.57 17.27 44.97 0.78 0.20 16 21 C -0.20 -0.12 10.01 22.36 0.22 0.10 16 22 C 0.12 -0.03 7.24 22.37 0.16 0.14 16 23 F -0.14 -0.20 16.36 44.97 0.74 0.54 16 24 C -0.14 0.93 7.25 31.12 0.23 1.15 16 25 C -0.12 0.24 5.47 30.79 0.17 0.41 16 26 C -0.05 0.05 5.85 29.70 0.17 0.22 16 27 H 0.39 -1.20 8.74 -74.06 -0.65 -1.85 16 28 H 0.08 -0.27 7.96 -2.39 -0.02 -0.29 16 29 H -0.29 -1.37 7.11 99.48 0.71 -0.67 16 30 H -0.31 -2.30 6.89 99.48 0.69 -1.61 16 31 H 0.14 0.02 4.34 -2.91 -0.01 0.01 16 32 H 0.41 0.89 8.09 -92.71 -0.75 0.14 16 33 H 0.12 -0.95 8.14 -2.39 -0.02 -0.97 16 34 H 0.42 -4.84 8.70 -92.71 -0.81 -5.65 16 35 H 0.11 -1.08 7.72 -2.39 -0.02 -1.10 16 36 H 0.09 -0.82 8.14 -2.39 -0.02 -0.83 16 37 H 0.17 -1.97 6.65 -2.91 -0.02 -1.99 16 38 H 0.16 -1.18 8.06 -2.91 -0.02 -1.21 16 39 H 0.15 -0.12 8.06 -2.91 -0.02 -0.14 16 40 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 41 H 0.11 -0.93 6.31 -2.39 -0.02 -0.95 16 42 H 0.10 -0.76 8.14 -2.38 -0.02 -0.78 16 43 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 45 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 Total: 0.00 -20.59 374.04 -0.14 -20.73 By element: Atomic # 1 Polarization: -18.20 SS G_CDS: -1.11 Total: -19.31 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 3.49 Total: 6.46 kcal Atomic # 7 Polarization: 3.28 SS G_CDS: -4.11 Total: -0.83 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -1.96 Total: -9.70 kcal Atomic # 9 Polarization: -0.77 SS G_CDS: 1.51 Total: 0.74 kcal Atomic # 14 Polarization: -0.13 SS G_CDS: 2.05 Total: 1.92 kcal Total: -20.59 -0.14 -20.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_15413834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.049 kcal (2) G-P(sol) polarization free energy of solvation -20.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds