Wall clock time and date at job start Sun Mar 7 2021 00:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86309 * 109.46951 * 2 1 4 4 C 1.50698 * 109.47293 * 240.00031 * 2 1 3 5 5 C 1.34496 * 125.49429 * 150.02365 * 4 2 1 6 6 C 1.46748 * 106.36670 * 179.97438 * 5 4 2 7 7 C 1.47263 * 126.97142 * 179.97438 * 6 5 4 8 8 O 1.21623 * 120.00126 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99630 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72408 * 9 7 6 11 11 H 1.09002 * 112.85201 * 24.08188 * 10 9 7 12 12 C 1.53784 * 113.61491 * 155.28109 * 10 9 7 13 13 C 1.53777 * 87.08172 * 89.11442 * 12 10 9 14 14 H 1.08994 * 113.61502 * 270.88324 * 13 12 10 15 15 C 1.50707 * 113.61053 * 140.06685 * 13 12 10 16 16 C 1.38179 * 119.98630 * 299.99747 * 15 13 12 17 17 C 1.38230 * 120.04995 * 180.02562 * 16 15 13 18 18 C 1.38454 * 120.02353 * 359.97438 * 17 16 15 19 19 F 1.35105 * 120.01089 * 180.02562 * 18 17 16 20 20 C 1.38433 * 119.97576 * 359.97438 * 18 17 16 21 21 C 1.38403 * 119.95115 * 359.75854 * 20 18 17 22 22 F 1.35093 * 120.01650 * 180.26094 * 21 20 18 23 23 C 1.53777 * 87.08146 * 25.43581 * 13 12 10 24 24 C 1.36338 * 106.05842 * 0.24680 * 6 5 4 25 25 C 1.51006 * 126.78751 * 180.46335 * 24 6 5 26 26 C 1.53392 * 108.30920 * 163.85358 * 25 24 6 27 27 C 1.53154 * 109.04567 * 48.24928 * 26 25 24 28 28 C 1.53126 * 109.53085 * 290.43259 * 27 26 25 29 29 N 1.35204 * 108.66147 * 359.60103 * 24 6 5 30 30 H 0.96704 * 114.00017 * 60.00295 * 1 2 3 31 31 H 1.08994 * 109.47113 * 119.99782 * 2 1 3 32 32 H 1.48499 * 109.99783 * 298.68205 * 3 2 1 33 33 H 1.48505 * 109.99834 * 59.99564 * 3 2 1 34 34 H 1.08001 * 126.81387 * 359.97438 * 5 4 2 35 35 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 36 36 H 1.08999 * 113.61037 * 203.66621 * 12 10 9 37 37 H 1.09001 * 113.61313 * 334.56329 * 12 10 9 38 38 H 1.08000 * 119.97735 * 359.97438 * 16 15 13 39 39 H 1.08004 * 119.98834 * 179.97438 * 17 16 15 40 40 H 1.08004 * 120.02901 * 180.02562 * 20 18 17 41 41 H 1.08999 * 113.61239 * 220.01646 * 23 13 12 42 42 H 1.08999 * 113.61926 * 89.11880 * 23 13 12 43 43 H 1.09001 * 109.86461 * 44.02862 * 25 24 6 44 44 H 1.09005 * 109.51733 * 283.46896 * 25 24 6 45 45 H 1.09008 * 109.53931 * 288.38083 * 26 25 24 46 46 H 1.08999 * 109.61122 * 168.16660 * 26 25 24 47 47 H 1.08994 * 109.46086 * 170.40950 * 27 26 25 48 48 H 1.09003 * 109.45742 * 50.44894 * 27 26 25 49 49 H 1.09000 * 109.56112 * 291.14033 * 28 27 26 50 50 H 1.09003 * 109.65587 * 170.86147 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7566 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 3.0860 -0.4466 -1.8678 6 6 3.1558 -1.3781 -2.9996 7 6 4.2340 -1.4800 -3.9975 8 8 4.1612 -2.3038 -4.8894 9 7 5.3013 -0.6605 -3.9224 10 6 6.3767 -0.7660 -4.9117 11 1 6.0451 -1.2061 -5.8522 12 6 7.1804 0.5331 -5.0889 13 6 8.0958 0.0280 -3.9612 14 1 7.7656 0.3236 -2.9654 15 6 9.5575 0.3067 -4.1999 16 6 10.1868 -0.2140 -5.3144 17 6 11.5276 0.0403 -5.5343 18 6 12.2414 0.8177 -4.6380 19 9 13.5517 1.0665 -4.8535 20 6 11.6116 1.3407 -3.5217 21 6 10.2678 1.0900 -3.3054 22 9 9.6507 1.6041 -2.2192 23 6 7.6655 -1.3946 -4.3559 24 6 2.0171 -2.1258 -2.9434 25 6 1.6170 -3.2361 -3.8854 26 6 0.4960 -4.0482 -3.2244 27 6 -0.5694 -3.0865 -2.6900 28 6 -0.0056 -2.3097 -1.4969 29 7 1.2887 -1.7251 -1.8772 30 1 -0.3933 0.4417 -0.7651 31 1 1.7924 -0.5138 0.8899 32 1 1.5878 2.4586 -1.2242 33 1 1.5614 2.4680 1.2085 34 1 3.8168 0.3022 -1.5997 35 1 5.3596 -0.0038 -3.2109 36 1 7.6791 0.6095 -6.0551 37 1 6.6210 1.4315 -4.8279 38 1 9.6310 -0.8208 -6.0138 39 1 12.0186 -0.3675 -6.4055 40 1 12.1675 1.9475 -2.8222 41 1 7.4979 -2.0525 -3.5032 42 1 8.2970 -1.8452 -5.1216 43 1 2.4728 -3.8822 -4.0811 44 1 1.2581 -2.8080 -4.8213 45 1 0.9061 -4.6324 -2.4006 46 1 0.0477 -4.7177 -3.9585 47 1 -1.4446 -3.6538 -2.3733 48 1 -0.8549 -2.3876 -3.4762 49 1 0.1332 -2.9863 -0.6536 50 1 -0.6971 -1.5149 -1.2171 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13428180_16915396.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:08:19 Heat of formation + Delta-G solvation = -63.092595 kcal Electronic energy + Delta-G solvation = -35787.759763 eV Core-core repulsion = 30804.517770 eV Total energy + Delta-G solvation = -4983.241993 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.159 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -49.99709 -49.95590 -42.78896 -41.38947 -39.87303 -38.55923 -38.13105 -36.95122 -34.33757 -33.45581 -31.91939 -31.50003 -31.17589 -29.45170 -26.78655 -26.77994 -26.10786 -24.71853 -24.47730 -23.84268 -22.74886 -21.80281 -21.20235 -20.24756 -19.56415 -19.29565 -18.93160 -18.19530 -17.62099 -17.17894 -16.98243 -16.89705 -16.75590 -16.56376 -16.42593 -16.27919 -16.22723 -15.69459 -15.51099 -15.45122 -15.38588 -15.22408 -15.11772 -14.92011 -14.62052 -14.54193 -14.26892 -13.95983 -13.84955 -13.73575 -13.55133 -13.46695 -13.26120 -12.84873 -12.80233 -12.58576 -12.40941 -12.17772 -12.08337 -12.06954 -11.87606 -11.81752 -11.71870 -11.32285 -10.93699 -10.67390 -10.12843 -9.94646 -9.59487 -9.54040 -9.00880 -5.04505 -0.12399 -0.05370 0.84311 0.97923 1.40141 1.57943 1.71738 1.96428 2.25893 2.40595 2.68483 2.83460 3.03511 3.28530 3.41114 3.42794 3.46756 3.50147 3.61794 3.62461 3.64655 3.73342 3.76173 3.81685 3.89204 4.02484 4.14220 4.16568 4.22844 4.31736 4.36426 4.40663 4.53999 4.58609 4.63165 4.65899 4.70186 4.71374 4.76417 4.78902 4.81629 4.85285 4.89183 4.90353 4.98428 5.01422 5.03158 5.09158 5.14224 5.20238 5.26854 5.68389 5.71078 5.75454 6.00649 6.19862 6.21128 6.72694 7.50356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.533 6.533 2 C -0.051 4.051 3 Si 0.711 3.289 4 C -0.012 4.012 5 C -0.162 4.162 6 C -0.235 4.235 7 C 0.598 3.402 8 O -0.547 6.547 9 N -0.711 5.711 10 C 0.125 3.875 11 H 0.107 0.893 12 C -0.136 4.136 13 C -0.075 4.075 14 H 0.105 0.895 15 C -0.113 4.113 16 C -0.060 4.060 17 C -0.159 4.159 18 C 0.126 3.874 19 F -0.131 7.131 20 C -0.190 4.190 21 C 0.133 3.867 22 F -0.128 7.128 23 C -0.143 4.143 24 C 0.121 3.879 25 C -0.056 4.056 26 C -0.129 4.129 27 C -0.139 4.139 28 C 0.099 3.901 29 N -0.427 5.427 30 H 0.376 0.624 31 H 0.121 0.879 32 H -0.256 1.256 33 H -0.254 1.254 34 H 0.153 0.847 35 H 0.401 0.599 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.074 0.926 49 H 0.083 0.917 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.348 0.243 0.404 1.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.160 4.160 3 Si 0.609 3.391 4 C -0.121 4.121 5 C -0.186 4.186 6 C -0.245 4.245 7 C 0.388 3.612 8 O -0.426 6.426 9 N -0.362 5.362 10 C 0.019 3.981 11 H 0.125 0.875 12 C -0.174 4.174 13 C -0.094 4.094 14 H 0.123 0.877 15 C -0.114 4.114 16 C -0.078 4.078 17 C -0.178 4.178 18 C 0.106 3.894 19 F -0.109 7.109 20 C -0.210 4.210 21 C 0.114 3.886 22 F -0.106 7.106 23 C -0.182 4.182 24 C 0.003 3.997 25 C -0.093 4.093 26 C -0.167 4.167 27 C -0.176 4.176 28 C -0.022 4.022 29 N -0.103 5.103 30 H 0.225 0.775 31 H 0.139 0.861 32 H -0.180 1.180 33 H -0.179 1.179 34 H 0.170 0.830 35 H 0.236 0.764 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.166 0.834 41 H 0.096 0.904 42 H 0.114 0.886 43 H 0.119 0.881 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.107 0.893 48 H 0.093 0.907 49 H 0.101 0.899 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.852 0.099 0.496 1.920 hybrid contribution -0.677 0.344 0.239 0.796 sum -2.529 0.444 0.735 2.671 Atomic orbital electron populations 1.86591 1.18068 1.79542 1.49737 1.24827 0.83438 1.11150 0.96563 0.94539 0.91360 0.72533 0.80645 1.20638 0.96307 0.95639 0.99508 1.21639 0.97797 1.02536 0.96600 1.19792 0.97843 1.05206 1.01635 1.17289 0.80567 0.79898 0.83458 1.90766 1.79312 1.36653 1.35836 1.45417 1.20308 1.38962 1.31528 1.21754 0.86289 0.96812 0.93263 0.87504 1.23449 0.96939 0.97828 0.99140 1.21567 0.89375 0.98012 1.00410 0.87729 1.19831 0.96694 0.99426 0.95468 1.20780 0.93381 0.97609 0.96054 1.21255 0.95096 1.00776 1.00711 1.17337 0.78624 0.98220 0.95172 1.91558 1.32345 1.92517 1.94506 1.21076 0.94407 1.05549 0.99958 1.17139 0.90065 0.96323 0.85096 1.91526 1.82560 1.84803 1.51759 1.23587 0.97020 0.95435 1.02140 1.20398 0.91224 0.97684 0.90350 1.20517 0.99477 0.93469 0.95856 1.21725 0.95840 0.97908 1.01217 1.21936 0.99275 0.99000 0.97435 1.22286 0.82649 0.98916 0.98316 1.43863 1.17576 1.27259 1.21649 0.77539 0.86135 1.18024 1.17901 0.82991 0.76413 0.88282 0.90198 0.83682 0.83819 0.83353 0.90372 0.88649 0.88092 0.89413 0.91282 0.90172 0.89322 0.90729 0.89894 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.36 10.28 -35.23 -0.36 0.00 16 2 C -0.05 0.07 3.00 36.00 0.11 0.17 16 3 Si 0.71 -1.43 31.11 -169.99 -5.29 -6.72 16 4 C -0.01 0.00 6.15 -81.87 -0.50 -0.50 16 5 C -0.16 0.03 9.09 -37.47 -0.34 -0.31 16 6 C -0.24 -0.49 6.28 -103.48 -0.65 -1.14 16 7 C 0.60 1.68 7.81 -12.59 -0.10 1.58 16 8 O -0.55 -3.19 14.94 5.26 0.08 -3.11 16 9 N -0.71 0.19 5.26 -54.14 -0.28 -0.10 16 10 C 0.12 -0.11 4.32 -67.12 -0.29 -0.40 16 11 H 0.11 0.06 7.47 -51.93 -0.39 -0.32 16 12 C -0.14 0.34 7.29 -25.92 -0.19 0.15 16 13 C -0.08 0.15 3.77 -90.96 -0.34 -0.20 16 14 H 0.10 -0.21 7.45 -51.93 -0.39 -0.59 16 15 C -0.11 0.10 5.30 -104.55 -0.55 -0.45 16 16 C -0.06 0.11 8.61 -39.61 -0.34 -0.23 16 17 C -0.16 0.16 10.02 -39.50 -0.40 -0.24 16 18 C 0.13 0.08 7.30 -39.43 -0.29 -0.21 16 19 F -0.13 -0.26 17.27 2.25 0.04 -0.22 16 20 C -0.19 -0.08 10.01 -39.45 -0.39 -0.47 16 21 C 0.13 0.05 7.25 -39.43 -0.29 -0.23 16 22 F -0.13 -0.14 16.36 2.25 0.04 -0.10 16 23 C -0.14 0.23 7.25 -25.92 -0.19 0.04 16 24 C 0.12 0.24 6.57 -81.64 -0.54 -0.30 16 25 C -0.06 -0.06 5.32 -27.53 -0.15 -0.20 16 26 C -0.13 0.14 5.98 -26.45 -0.16 -0.02 16 27 C -0.14 0.28 5.92 -26.59 -0.16 0.12 16 28 C 0.10 -0.12 6.22 -3.69 -0.02 -0.14 16 29 N -0.43 -0.27 3.11 -107.37 -0.33 -0.61 16 30 H 0.38 -1.11 8.27 45.56 0.38 -0.73 16 31 H 0.12 -0.22 7.96 -51.93 -0.41 -0.64 16 32 H -0.26 -0.15 7.11 56.52 0.40 0.25 16 33 H -0.25 -0.28 7.11 56.52 0.40 0.12 16 34 H 0.15 -0.52 6.52 -52.49 -0.34 -0.86 16 35 H 0.40 -0.98 7.83 -40.82 -0.32 -1.30 16 36 H 0.10 -0.31 7.72 -51.93 -0.40 -0.71 16 37 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 38 H 0.15 -0.57 6.66 -52.49 -0.35 -0.92 16 39 H 0.14 -0.37 8.06 -52.48 -0.42 -0.80 16 40 H 0.15 -0.10 8.06 -52.48 -0.42 -0.52 16 41 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 42 H 0.10 -0.24 6.32 -51.93 -0.33 -0.57 16 43 H 0.10 0.22 7.40 -51.93 -0.38 -0.16 16 44 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 45 H 0.07 -0.05 8.12 -51.92 -0.42 -0.47 16 46 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 47 H 0.09 -0.29 8.14 -51.93 -0.42 -0.71 16 48 H 0.07 -0.12 8.11 -51.93 -0.42 -0.54 16 49 H 0.08 -0.09 8.14 -51.93 -0.42 -0.52 16 50 H 0.10 -0.20 5.67 -51.93 -0.29 -0.50 16 LS Contribution 406.46 15.07 6.13 6.13 Total: 0.00 -7.78 406.46 -12.42 -20.20 By element: Atomic # 1 Polarization: -5.83 SS G_CDS: -6.65 Total: -12.49 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -5.77 Total: -2.99 kcal Atomic # 7 Polarization: -0.08 SS G_CDS: -0.62 Total: -0.70 kcal Atomic # 8 Polarization: -2.83 SS G_CDS: -0.28 Total: -3.11 kcal Atomic # 9 Polarization: -0.40 SS G_CDS: 0.08 Total: -0.32 kcal Atomic # 14 Polarization: -1.43 SS G_CDS: -5.29 Total: -6.72 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -7.78 -12.42 -20.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_16915396.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.892 kcal (2) G-P(sol) polarization free energy of solvation -7.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds