Wall clock time and date at job start Sun Mar 7 2021 00:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86309 * 109.46951 * 2 1 4 4 C 1.50698 * 109.47293 * 240.00031 * 2 1 3 5 5 C 1.34496 * 125.49429 * 150.02365 * 4 2 1 6 6 C 1.46748 * 106.36670 * 179.97438 * 5 4 2 7 7 C 1.47263 * 126.97142 * 179.97438 * 6 5 4 8 8 O 1.21623 * 120.00126 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99630 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72408 * 9 7 6 11 11 H 1.09002 * 112.85201 * 24.08188 * 10 9 7 12 12 C 1.53784 * 113.61491 * 155.28109 * 10 9 7 13 13 C 1.53777 * 87.08172 * 89.11442 * 12 10 9 14 14 H 1.08994 * 113.61502 * 270.88324 * 13 12 10 15 15 C 1.50707 * 113.61053 * 140.06685 * 13 12 10 16 16 C 1.38179 * 119.98630 * 299.99747 * 15 13 12 17 17 C 1.38230 * 120.04995 * 180.02562 * 16 15 13 18 18 C 1.38454 * 120.02353 * 359.97438 * 17 16 15 19 19 F 1.35105 * 120.01089 * 180.02562 * 18 17 16 20 20 C 1.38433 * 119.97576 * 359.97438 * 18 17 16 21 21 C 1.38403 * 119.95115 * 359.75854 * 20 18 17 22 22 F 1.35093 * 120.01650 * 180.26094 * 21 20 18 23 23 C 1.53777 * 87.08146 * 25.43581 * 13 12 10 24 24 C 1.36338 * 106.05842 * 0.24680 * 6 5 4 25 25 C 1.51006 * 126.78751 * 180.46335 * 24 6 5 26 26 C 1.53392 * 108.30920 * 163.85358 * 25 24 6 27 27 C 1.53154 * 109.04567 * 48.24928 * 26 25 24 28 28 C 1.53126 * 109.53085 * 290.43259 * 27 26 25 29 29 N 1.35204 * 108.66147 * 359.60103 * 24 6 5 30 30 H 0.96704 * 114.00017 * 60.00295 * 1 2 3 31 31 H 1.08994 * 109.47113 * 119.99782 * 2 1 3 32 32 H 1.48499 * 109.99783 * 298.68205 * 3 2 1 33 33 H 1.48505 * 109.99834 * 59.99564 * 3 2 1 34 34 H 1.08001 * 126.81387 * 359.97438 * 5 4 2 35 35 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 36 36 H 1.08999 * 113.61037 * 203.66621 * 12 10 9 37 37 H 1.09001 * 113.61313 * 334.56329 * 12 10 9 38 38 H 1.08000 * 119.97735 * 359.97438 * 16 15 13 39 39 H 1.08004 * 119.98834 * 179.97438 * 17 16 15 40 40 H 1.08004 * 120.02901 * 180.02562 * 20 18 17 41 41 H 1.08999 * 113.61239 * 220.01646 * 23 13 12 42 42 H 1.08999 * 113.61926 * 89.11880 * 23 13 12 43 43 H 1.09001 * 109.86461 * 44.02862 * 25 24 6 44 44 H 1.09005 * 109.51733 * 283.46896 * 25 24 6 45 45 H 1.09008 * 109.53931 * 288.38083 * 26 25 24 46 46 H 1.08999 * 109.61122 * 168.16660 * 26 25 24 47 47 H 1.08994 * 109.46086 * 170.40950 * 27 26 25 48 48 H 1.09003 * 109.45742 * 50.44894 * 27 26 25 49 49 H 1.09000 * 109.56112 * 291.14033 * 28 27 26 50 50 H 1.09003 * 109.65587 * 170.86147 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7566 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 3.0860 -0.4466 -1.8678 6 6 3.1558 -1.3781 -2.9996 7 6 4.2340 -1.4800 -3.9975 8 8 4.1612 -2.3038 -4.8894 9 7 5.3013 -0.6605 -3.9224 10 6 6.3767 -0.7660 -4.9117 11 1 6.0451 -1.2061 -5.8522 12 6 7.1804 0.5331 -5.0889 13 6 8.0958 0.0280 -3.9612 14 1 7.7656 0.3236 -2.9654 15 6 9.5575 0.3067 -4.1999 16 6 10.1868 -0.2140 -5.3144 17 6 11.5276 0.0403 -5.5343 18 6 12.2414 0.8177 -4.6380 19 9 13.5517 1.0665 -4.8535 20 6 11.6116 1.3407 -3.5217 21 6 10.2678 1.0900 -3.3054 22 9 9.6507 1.6041 -2.2192 23 6 7.6655 -1.3946 -4.3559 24 6 2.0171 -2.1258 -2.9434 25 6 1.6170 -3.2361 -3.8854 26 6 0.4960 -4.0482 -3.2244 27 6 -0.5694 -3.0865 -2.6900 28 6 -0.0056 -2.3097 -1.4969 29 7 1.2887 -1.7251 -1.8772 30 1 -0.3933 0.4417 -0.7651 31 1 1.7924 -0.5138 0.8899 32 1 1.5878 2.4586 -1.2242 33 1 1.5614 2.4680 1.2085 34 1 3.8168 0.3022 -1.5997 35 1 5.3596 -0.0038 -3.2109 36 1 7.6791 0.6095 -6.0551 37 1 6.6210 1.4315 -4.8279 38 1 9.6310 -0.8208 -6.0138 39 1 12.0186 -0.3675 -6.4055 40 1 12.1675 1.9475 -2.8222 41 1 7.4979 -2.0525 -3.5032 42 1 8.2970 -1.8452 -5.1216 43 1 2.4728 -3.8822 -4.0811 44 1 1.2581 -2.8080 -4.8213 45 1 0.9061 -4.6324 -2.4006 46 1 0.0477 -4.7177 -3.9585 47 1 -1.4446 -3.6538 -2.3733 48 1 -0.8549 -2.3876 -3.4762 49 1 0.1332 -2.9863 -0.6536 50 1 -0.6971 -1.5149 -1.2171 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_16915396.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:08:18 Heat of formation + Delta-G solvation = -57.198282 kcal Electronic energy + Delta-G solvation = -35787.504167 eV Core-core repulsion = 30804.517770 eV Total energy + Delta-G solvation = -4982.986396 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.159 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -50.02145 -49.99859 -42.79128 -41.33842 -39.92983 -38.55863 -38.06912 -36.90095 -34.41080 -33.46150 -31.85517 -31.45122 -31.13961 -29.43344 -26.74167 -26.64295 -26.04331 -24.67361 -24.43570 -23.83651 -22.71081 -21.76063 -21.21910 -20.22160 -19.52605 -19.28091 -18.90732 -18.17196 -17.63231 -17.13513 -17.00201 -16.85747 -16.73343 -16.52603 -16.45654 -16.32483 -16.15429 -15.75227 -15.51093 -15.37340 -15.34434 -15.16357 -15.08797 -14.91529 -14.62417 -14.52023 -14.27790 -13.90283 -13.84391 -13.66266 -13.50771 -13.35913 -13.19164 -12.80946 -12.77207 -12.51027 -12.39606 -12.18234 -12.00471 -11.95929 -11.82288 -11.76070 -11.64159 -11.23062 -10.88973 -10.84478 -10.08194 -10.00252 -9.56604 -9.52600 -9.04048 -4.90636 -0.08082 0.01059 0.73248 1.05680 1.44430 1.67648 1.78403 2.03257 2.32531 2.41512 2.55999 2.86802 3.18158 3.36319 3.47053 3.50923 3.54830 3.57488 3.68656 3.72577 3.75642 3.78668 3.81760 3.93001 4.00573 4.14434 4.17691 4.23926 4.30929 4.36586 4.39864 4.51730 4.63374 4.68532 4.75033 4.76409 4.77840 4.80509 4.82459 4.88661 4.91129 4.95378 4.96333 4.99762 5.01498 5.08191 5.13486 5.15396 5.19523 5.23684 5.36275 5.71013 5.75308 5.77266 6.03238 6.21875 6.33708 6.71023 7.39808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.054 4.054 3 Si 0.798 3.202 4 C -0.019 4.019 5 C -0.160 4.160 6 C -0.256 4.256 7 C 0.593 3.407 8 O -0.587 6.587 9 N -0.699 5.699 10 C 0.117 3.883 11 H 0.091 0.909 12 C -0.123 4.123 13 C -0.070 4.070 14 H 0.106 0.894 15 C -0.110 4.110 16 C -0.056 4.056 17 C -0.156 4.156 18 C 0.106 3.894 19 F -0.143 7.143 20 C -0.198 4.198 21 C 0.118 3.882 22 F -0.135 7.135 23 C -0.138 4.138 24 C 0.102 3.898 25 C -0.053 4.053 26 C -0.125 4.125 27 C -0.134 4.134 28 C 0.095 3.905 29 N -0.429 5.429 30 H 0.385 0.615 31 H 0.129 0.871 32 H -0.289 1.289 33 H -0.297 1.297 34 H 0.182 0.818 35 H 0.413 0.587 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.170 0.830 39 H 0.161 0.839 40 H 0.151 0.849 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.089 0.911 47 H 0.106 0.894 48 H 0.071 0.929 49 H 0.084 0.916 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.636 0.486 0.597 1.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.163 4.163 3 Si 0.701 3.299 4 C -0.127 4.127 5 C -0.184 4.184 6 C -0.266 4.266 7 C 0.383 3.617 8 O -0.469 6.469 9 N -0.350 5.350 10 C 0.012 3.988 11 H 0.109 0.891 12 C -0.161 4.161 13 C -0.088 4.088 14 H 0.124 0.876 15 C -0.111 4.111 16 C -0.074 4.074 17 C -0.175 4.175 18 C 0.087 3.913 19 F -0.122 7.122 20 C -0.218 4.218 21 C 0.098 3.902 22 F -0.114 7.114 23 C -0.177 4.177 24 C -0.016 4.016 25 C -0.091 4.091 26 C -0.162 4.162 27 C -0.171 4.171 28 C -0.025 4.025 29 N -0.105 5.105 30 H 0.235 0.765 31 H 0.147 0.853 32 H -0.216 1.216 33 H -0.224 1.224 34 H 0.200 0.800 35 H 0.250 0.750 36 H 0.129 0.871 37 H 0.104 0.896 38 H 0.187 0.813 39 H 0.178 0.822 40 H 0.169 0.831 41 H 0.085 0.915 42 H 0.126 0.874 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.108 0.892 47 H 0.125 0.875 48 H 0.090 0.910 49 H 0.102 0.898 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.121 0.349 0.707 2.263 hybrid contribution -0.619 0.280 0.184 0.704 sum -2.740 0.629 0.891 2.949 Atomic orbital electron populations 1.86569 1.18382 1.79836 1.50421 1.25023 0.83264 1.11703 0.96274 0.93495 0.90021 0.69989 0.76368 1.20946 0.96418 0.95527 0.99846 1.22001 0.98357 1.02523 0.95504 1.19977 0.97934 1.06258 1.02407 1.17508 0.81267 0.79747 0.83157 1.90737 1.80252 1.38431 1.37443 1.45337 1.19616 1.38306 1.31726 1.21818 0.86285 0.98162 0.92554 0.89125 1.23418 0.96179 0.97044 0.99475 1.21537 0.88866 0.97693 1.00747 0.87606 1.19986 0.97051 0.98788 0.95311 1.21061 0.93146 0.97216 0.95985 1.21505 0.95384 0.99859 1.00703 1.17566 0.78377 0.99411 0.95991 1.91523 1.33223 1.92783 1.94639 1.21166 0.94676 1.05777 1.00180 1.17289 0.90221 0.97208 0.85433 1.91503 1.82629 1.85047 1.52180 1.23582 0.96656 0.95461 1.02000 1.20586 0.91795 0.98173 0.91071 1.20428 0.99480 0.93368 0.95783 1.21698 0.95440 0.97915 1.01180 1.21921 0.99392 0.98765 0.97035 1.22431 0.82142 0.99293 0.98598 1.44036 1.17970 1.27252 1.21204 0.76489 0.85297 1.21597 1.22408 0.80048 0.75035 0.87121 0.89603 0.81259 0.82162 0.83133 0.91510 0.87420 0.89978 0.90173 0.91593 0.89245 0.87541 0.91015 0.89822 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.11 10.28 -148.98 -1.53 -0.42 16 2 C -0.05 0.19 3.00 71.24 0.21 0.40 16 3 Si 0.80 -3.71 31.11 68.60 2.13 -1.58 16 4 C -0.02 0.01 6.15 40.99 0.25 0.26 16 5 C -0.16 0.13 9.09 23.64 0.21 0.35 16 6 C -0.26 -1.28 6.28 -19.12 -0.12 -1.40 16 7 C 0.59 4.05 7.81 86.62 0.68 4.73 16 8 O -0.59 -8.10 14.94 -4.10 -0.06 -8.17 16 9 N -0.70 0.20 5.26 -443.44 -2.33 -2.13 16 10 C 0.12 -0.22 4.32 45.52 0.20 -0.02 16 11 H 0.09 0.18 7.47 -2.39 -0.02 0.16 16 12 C -0.12 0.75 7.29 31.12 0.23 0.98 16 13 C -0.07 0.34 3.77 -11.01 -0.04 0.29 16 14 H 0.11 -0.50 7.45 -2.39 -0.02 -0.52 16 15 C -0.11 0.29 5.30 -19.81 -0.10 0.18 16 16 C -0.06 0.28 8.61 22.25 0.19 0.47 16 17 C -0.16 0.43 10.02 22.32 0.22 0.66 16 18 C 0.11 0.16 7.30 22.37 0.16 0.32 16 19 F -0.14 -0.66 17.27 44.97 0.78 0.11 16 20 C -0.20 -0.27 10.01 22.36 0.22 -0.05 16 21 C 0.12 0.10 7.25 22.37 0.16 0.26 16 22 F -0.14 -0.32 16.36 44.97 0.74 0.42 16 23 C -0.14 0.51 7.25 31.12 0.23 0.74 16 24 C 0.10 0.51 6.57 41.69 0.27 0.79 16 25 C -0.05 -0.20 5.32 30.08 0.16 -0.04 16 26 C -0.12 0.19 5.98 30.78 0.18 0.38 16 27 C -0.13 0.56 5.92 30.69 0.18 0.74 16 28 C 0.10 -0.25 6.22 86.32 0.54 0.29 16 29 N -0.43 -0.62 3.11 -493.61 -1.54 -2.16 16 30 H 0.39 -2.49 8.27 -74.05 -0.61 -3.11 16 31 H 0.13 -0.63 7.96 -2.39 -0.02 -0.65 16 32 H -0.29 -0.29 7.11 99.48 0.71 0.41 16 33 H -0.30 -0.75 7.11 99.48 0.71 -0.04 16 34 H 0.18 -1.52 6.52 -2.91 -0.02 -1.54 16 35 H 0.41 -2.25 7.83 -92.71 -0.73 -2.97 16 36 H 0.11 -0.88 7.72 -2.39 -0.02 -0.90 16 37 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 38 H 0.17 -1.71 6.66 -2.91 -0.02 -1.73 16 39 H 0.16 -1.05 8.06 -2.91 -0.02 -1.07 16 40 H 0.15 -0.03 8.06 -2.91 -0.02 -0.05 16 41 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.11 -0.67 6.32 -2.39 -0.02 -0.69 16 43 H 0.08 0.59 7.40 -2.39 -0.02 0.58 16 44 H 0.08 0.37 8.14 -2.38 -0.02 0.35 16 45 H 0.07 -0.05 8.12 -2.38 -0.02 -0.07 16 46 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 47 H 0.11 -0.81 8.14 -2.39 -0.02 -0.82 16 48 H 0.07 -0.23 8.11 -2.39 -0.02 -0.25 16 49 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 50 H 0.11 -0.51 5.67 -2.39 -0.01 -0.52 16 Total: 0.00 -20.23 406.46 1.94 -18.29 By element: Atomic # 1 Polarization: -14.41 SS G_CDS: -0.28 Total: -14.69 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 4.04 Total: 10.32 kcal Atomic # 7 Polarization: -0.42 SS G_CDS: -3.87 Total: -4.29 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -1.59 Total: -8.59 kcal Atomic # 9 Polarization: -0.98 SS G_CDS: 1.51 Total: 0.54 kcal Atomic # 14 Polarization: -3.71 SS G_CDS: 2.13 Total: -1.58 kcal Total: -20.23 1.94 -18.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_16915396.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.910 kcal (2) G-P(sol) polarization free energy of solvation -20.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds