Wall clock time and date at job start Sun Mar 7 2021 00:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86294 * 109.47486 * 2 1 4 4 C 1.50699 * 109.46998 * 120.00198 * 2 1 3 5 5 C 1.38260 * 119.94897 * 64.99171 * 4 2 1 6 6 C 1.38146 * 120.05929 * 180.02562 * 5 4 2 7 7 C 1.38728 * 119.94497 * 0.02562 * 6 5 4 8 8 O 1.35900 * 120.05929 * 180.02562 * 7 6 5 9 9 C 1.42900 * 116.99897 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.46682 * 179.97438 * 9 8 7 11 11 C 1.50705 * 109.47101 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99817 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00099 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99928 * 179.97438 * 13 11 10 15 15 H 1.09001 * 112.90323 * 336.24445 * 14 13 11 16 16 C 1.53774 * 113.61603 * 107.50241 * 14 13 11 17 17 C 1.53778 * 87.08507 * 89.11410 * 16 14 13 18 18 H 1.08996 * 113.68897 * 270.87528 * 17 16 14 19 19 C 1.50697 * 113.61583 * 139.98014 * 17 16 14 20 20 C 1.38451 * 119.98947 * 142.50535 * 19 17 16 21 21 F 1.35097 * 120.00719 * 359.97438 * 20 19 17 22 22 C 1.38441 * 119.97581 * 180.02562 * 20 19 17 23 23 C 1.38395 * 119.94711 * 0.02562 * 22 20 19 24 24 F 1.35100 * 120.00942 * 179.97438 * 23 22 20 25 25 C 1.38497 * 119.97917 * 359.97438 * 23 22 20 26 26 C 1.38183 * 120.02410 * 0.26183 * 25 23 22 27 27 C 1.53780 * 113.61286 * 205.00077 * 14 13 11 28 28 C 1.38734 * 119.88481 * 0.26876 * 7 6 5 29 29 C 1.38144 * 119.94615 * 359.47808 * 28 7 6 30 30 H 0.96697 * 113.99341 * 60.00045 * 1 2 3 31 31 H 1.09006 * 109.46934 * 239.99616 * 2 1 3 32 32 H 1.48496 * 110.00053 * 59.99517 * 3 2 1 33 33 H 1.48496 * 110.00277 * 181.32109 * 3 2 1 34 34 H 1.08005 * 119.96997 * 359.97438 * 5 4 2 35 35 H 1.07999 * 120.03093 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.46797 * 60.00107 * 9 8 7 37 37 H 1.08990 * 109.47297 * 299.99697 * 9 8 7 38 38 H 1.08989 * 109.47414 * 60.00217 * 10 9 8 39 39 H 1.09001 * 109.47185 * 299.99497 * 10 9 8 40 40 H 0.97003 * 120.00155 * 359.97438 * 13 11 10 41 41 H 1.08999 * 113.61287 * 334.56021 * 16 14 13 42 42 H 1.08999 * 113.61338 * 203.66499 * 16 14 13 43 43 H 1.07993 * 120.02131 * 180.02562 * 22 20 19 44 44 H 1.08002 * 119.98574 * 179.97438 * 25 23 22 45 45 H 1.07995 * 119.97787 * 179.74752 * 26 25 23 46 46 H 1.09001 * 113.61528 * 156.33687 * 27 14 13 47 47 H 1.08994 * 113.61758 * 25.42529 * 27 14 13 48 48 H 1.08007 * 120.02936 * 179.72651 * 28 7 6 49 49 H 1.08001 * 119.97379 * 180.27395 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0502 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.6839 -2.0605 1.3973 6 6 2.1429 -2.7139 2.5246 7 6 2.8521 -2.0142 3.4900 8 8 3.3051 -2.6548 4.5997 9 6 4.0284 -1.8715 5.5512 10 6 4.4536 -2.7579 6.7235 11 6 5.2158 -1.9317 7.7274 12 8 5.4010 -0.7503 7.5247 13 7 5.6924 -2.5058 8.8497 14 6 6.4338 -1.7027 9.8253 15 1 6.8874 -0.8142 9.3861 16 6 5.6464 -1.4190 11.1153 17 6 6.2328 -2.7288 11.6680 18 1 5.6271 -3.6075 11.4468 19 6 6.6356 -2.6454 13.1178 20 6 6.4368 -3.7302 13.9547 21 9 5.8814 -4.8632 13.4720 22 6 6.8064 -3.6532 15.2867 23 6 7.3738 -2.4913 15.7800 24 9 7.7345 -2.4145 17.0797 25 6 7.5718 -1.4073 14.9410 26 6 7.1980 -1.4837 13.6129 27 6 7.4028 -2.5252 10.6909 28 6 3.0938 -0.6583 3.3232 29 6 2.6373 -0.0106 2.1916 30 1 -0.3932 0.4417 -0.7651 31 1 1.7924 -0.5139 -0.8900 32 1 1.5616 2.4678 1.2084 33 1 3.5347 1.7702 -0.0322 34 1 1.1306 -2.6045 0.6461 35 1 1.9490 -3.7683 2.6547 36 1 3.3919 -1.0659 5.9173 37 1 4.9130 -1.4481 5.0758 38 1 5.0898 -3.5637 6.3577 39 1 3.5686 -3.1809 7.1989 40 1 5.5445 -3.4507 9.0116 41 1 4.5650 -1.4469 10.9818 42 1 5.9854 -0.5301 11.6472 43 1 6.6521 -4.4990 15.9400 44 1 8.0142 -0.5004 15.3260 45 1 7.3489 -0.6366 12.9603 46 1 8.2220 -1.9387 11.1069 47 1 7.7393 -3.4462 10.2149 48 1 3.6419 -0.1104 4.0754 49 1 2.8290 1.0439 2.0591 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13428180_4549602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:08:33 Heat of formation + Delta-G solvation = -113.023305 kcal Electronic energy + Delta-G solvation = -33635.676844 eV Core-core repulsion = 28552.551031 eV Total energy + Delta-G solvation = -5083.125813 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.148 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -50.09545 -50.03392 -41.77527 -41.24620 -40.37177 -39.14792 -38.74458 -37.20951 -34.73550 -33.42658 -32.11462 -31.96805 -31.67225 -31.27648 -26.97981 -26.96464 -26.20350 -25.44075 -24.37257 -23.60794 -22.92746 -22.08829 -21.63778 -20.43338 -19.58522 -19.35747 -18.37710 -18.35903 -18.08875 -17.53631 -17.33005 -17.28118 -17.06994 -16.95183 -16.68353 -16.62686 -16.36630 -16.06977 -15.79425 -15.57233 -15.45544 -15.37298 -15.35946 -14.71752 -14.67871 -14.43307 -14.32114 -13.97969 -13.89949 -13.81900 -13.68358 -13.63488 -13.57015 -13.05492 -12.88277 -12.82931 -12.68853 -12.34015 -12.24027 -11.93250 -11.91066 -11.82053 -11.72730 -11.51193 -11.08208 -10.28820 -10.28213 -10.19044 -10.00278 -9.69066 -9.15981 -4.96109 -0.22105 -0.14435 0.31203 0.35095 1.30819 1.42336 1.59624 1.65545 1.99350 2.16265 2.37480 2.66572 2.74357 3.13136 3.31050 3.34492 3.40456 3.43719 3.47519 3.50096 3.65798 3.73478 3.75323 3.78202 3.80479 3.86502 3.88773 4.01186 4.02241 4.22864 4.27180 4.34991 4.40492 4.43974 4.47331 4.53903 4.57242 4.60629 4.63391 4.67564 4.72835 4.74270 4.78498 4.80697 4.89737 4.92651 4.96316 5.10520 5.21059 5.30288 5.38533 5.53141 5.61547 5.72736 6.24439 6.35875 6.65031 7.00489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.066 4.066 3 Si 0.680 3.320 4 C -0.114 4.114 5 C -0.050 4.050 6 C -0.149 4.149 7 C 0.138 3.862 8 O -0.315 6.315 9 C 0.073 3.927 10 C -0.141 4.141 11 C 0.524 3.476 12 O -0.535 6.535 13 N -0.712 5.712 14 C 0.119 3.881 15 H 0.109 0.891 16 C -0.143 4.143 17 C -0.075 4.075 18 H 0.104 0.896 19 C -0.116 4.116 20 C 0.133 3.867 21 F -0.129 7.129 22 C -0.190 4.190 23 C 0.128 3.872 24 F -0.130 7.130 25 C -0.159 4.159 26 C -0.060 4.060 27 C -0.134 4.134 28 C -0.201 4.201 29 C -0.082 4.082 30 H 0.381 0.619 31 H 0.073 0.927 32 H -0.251 1.251 33 H -0.255 1.255 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.404 0.596 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.149 0.851 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.101 0.899 47 H 0.080 0.920 48 H 0.134 0.866 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.792 -0.329 -2.332 2.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.176 4.176 3 Si 0.581 3.419 4 C -0.114 4.114 5 C -0.068 4.068 6 C -0.167 4.167 7 C 0.092 3.908 8 O -0.229 6.229 9 C -0.002 4.002 10 C -0.181 4.181 11 C 0.311 3.689 12 O -0.412 6.412 13 N -0.364 5.364 14 C 0.014 3.986 15 H 0.127 0.873 16 C -0.181 4.181 17 C -0.094 4.094 18 H 0.122 0.878 19 C -0.117 4.117 20 C 0.114 3.886 21 F -0.107 7.107 22 C -0.209 4.209 23 C 0.108 3.892 24 F -0.108 7.108 25 C -0.178 4.178 26 C -0.078 4.078 27 C -0.172 4.172 28 C -0.220 4.220 29 C -0.100 4.100 30 H 0.229 0.771 31 H 0.091 0.909 32 H -0.176 1.176 33 H -0.180 1.180 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.239 0.761 41 H 0.096 0.904 42 H 0.116 0.884 43 H 0.167 0.833 44 H 0.163 0.837 45 H 0.163 0.837 46 H 0.120 0.880 47 H 0.099 0.901 48 H 0.152 0.848 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.485 0.569 -1.407 2.123 hybrid contribution 0.046 -1.132 0.770 1.370 sum 1.531 -0.563 -0.637 1.751 Atomic orbital electron populations 1.86502 1.17342 1.81764 1.49645 1.24597 0.85587 1.10093 0.97354 0.95432 0.80800 0.78319 0.87334 1.19245 1.01564 0.94477 0.96106 1.20823 0.96207 0.93350 0.96438 1.20508 1.01623 1.00893 0.93688 1.18950 0.94244 0.90777 0.86798 1.85973 1.69142 1.38415 1.29322 1.22426 0.96420 0.93329 0.88071 1.21468 1.02288 0.99602 0.94772 1.20304 0.78814 0.88006 0.81807 1.90759 1.57638 1.16058 1.76697 1.45632 1.56745 1.13296 1.20686 1.21847 0.92915 0.95603 0.88233 0.87318 1.23585 1.01317 0.97120 0.96095 1.21562 0.98470 1.00044 0.89279 0.87786 1.19792 1.02466 0.93344 0.96060 1.17138 0.97088 0.82985 0.91392 1.91528 1.82545 1.48450 1.88174 1.21085 1.04635 0.99688 0.95522 1.17342 0.98389 0.94461 0.78968 1.91562 1.89240 1.96632 1.33380 1.21261 1.03617 0.98935 0.93967 1.20775 0.95455 0.97057 0.94522 1.23446 0.96650 1.01289 0.95844 1.21212 1.06411 0.94015 1.00313 1.20689 0.97348 0.98674 0.93249 0.77120 0.90884 1.17624 1.18019 0.84702 0.84601 0.90888 0.90880 0.87304 0.87318 0.76061 0.90368 0.88383 0.83278 0.83730 0.83693 0.88046 0.90134 0.84822 0.86242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.40 12.81 -35.23 -0.45 -0.85 16 2 C -0.07 -0.04 2.79 36.01 0.10 0.06 16 3 Si 0.68 -0.23 29.85 -169.99 -5.07 -5.30 16 4 C -0.11 -0.35 5.38 -104.60 -0.56 -0.91 16 5 C -0.05 -0.12 9.68 -39.61 -0.38 -0.51 16 6 C -0.15 -0.37 9.99 -39.43 -0.39 -0.76 16 7 C 0.14 0.44 6.69 -39.22 -0.26 0.18 16 8 O -0.31 -0.72 10.14 -19.42 -0.20 -0.92 16 9 C 0.07 0.05 4.03 37.16 0.15 0.20 16 10 C -0.14 0.26 6.07 -27.88 -0.17 0.09 16 11 C 0.52 -0.01 7.83 -10.98 -0.09 -0.10 16 12 O -0.54 -2.14 15.58 5.55 0.09 -2.05 16 13 N -0.71 1.68 5.26 -53.02 -0.28 1.40 16 14 C 0.12 -0.25 4.32 -67.12 -0.29 -0.54 16 15 H 0.11 -0.06 7.47 -51.93 -0.39 -0.45 16 16 C -0.14 0.35 7.25 -25.92 -0.19 0.16 16 17 C -0.08 0.19 3.78 -90.96 -0.34 -0.15 16 18 H 0.10 -0.26 7.44 -51.93 -0.39 -0.65 16 19 C -0.12 0.15 5.29 -104.54 -0.55 -0.41 16 20 C 0.13 0.02 7.24 -39.43 -0.29 -0.26 16 21 F -0.13 -0.13 16.36 2.25 0.04 -0.09 16 22 C -0.19 -0.04 10.01 -39.45 -0.39 -0.43 16 23 C 0.13 0.05 7.30 -39.43 -0.29 -0.24 16 24 F -0.13 -0.23 17.27 2.25 0.04 -0.19 16 25 C -0.16 0.21 10.02 -39.51 -0.40 -0.19 16 26 C -0.06 0.13 8.62 -39.60 -0.34 -0.21 16 27 C -0.13 0.44 7.29 -25.92 -0.19 0.25 16 28 C -0.20 -0.64 9.04 -39.43 -0.36 -1.00 16 29 C -0.08 -0.29 8.66 -39.60 -0.34 -0.63 16 30 H 0.38 -1.67 8.74 45.56 0.40 -1.27 16 31 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 32 H -0.25 -0.73 7.04 56.52 0.40 -0.34 16 33 H -0.26 -0.55 7.11 56.52 0.40 -0.15 16 34 H 0.14 0.10 8.06 -52.48 -0.42 -0.33 16 35 H 0.14 0.11 8.06 -52.49 -0.42 -0.32 16 36 H 0.07 0.09 7.61 -51.93 -0.40 -0.31 16 37 H 0.07 0.08 7.63 -51.93 -0.40 -0.32 16 38 H 0.11 -0.36 8.14 -51.94 -0.42 -0.78 16 39 H 0.11 -0.35 8.14 -51.93 -0.42 -0.77 16 40 H 0.40 -1.91 8.70 -40.82 -0.36 -2.27 16 41 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 42 H 0.10 -0.32 6.29 -51.93 -0.33 -0.65 16 43 H 0.15 -0.12 8.06 -52.49 -0.42 -0.54 16 44 H 0.14 -0.42 8.06 -52.49 -0.42 -0.85 16 45 H 0.15 -0.64 6.64 -52.49 -0.35 -0.99 16 46 H 0.10 -0.39 7.73 -51.93 -0.40 -0.79 16 47 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 48 H 0.13 0.26 6.30 -52.48 -0.33 -0.07 16 49 H 0.12 0.35 4.86 -52.49 -0.26 0.10 16 LS Contribution 414.89 15.07 6.25 6.25 Total: 0.00 -9.27 414.89 -11.35 -20.61 By element: Atomic # 1 Polarization: -7.29 SS G_CDS: -6.18 Total: -13.47 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -5.58 Total: -5.39 kcal Atomic # 7 Polarization: 1.68 SS G_CDS: -0.28 Total: 1.40 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: -0.56 Total: -3.82 kcal Atomic # 9 Polarization: -0.36 SS G_CDS: 0.08 Total: -0.28 kcal Atomic # 14 Polarization: -0.23 SS G_CDS: -5.07 Total: -5.30 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -9.27 -11.35 -20.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_4549602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.410 kcal (2) G-P(sol) polarization free energy of solvation -9.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds