Wall clock time and date at job start Sun Mar 7 2021 00:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86294 * 109.47486 * 2 1 4 4 C 1.50699 * 109.46998 * 120.00198 * 2 1 3 5 5 C 1.38260 * 119.94897 * 64.99171 * 4 2 1 6 6 C 1.38146 * 120.05929 * 180.02562 * 5 4 2 7 7 C 1.38728 * 119.94497 * 0.02562 * 6 5 4 8 8 O 1.35900 * 120.05929 * 180.02562 * 7 6 5 9 9 C 1.42900 * 116.99897 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.46682 * 179.97438 * 9 8 7 11 11 C 1.50705 * 109.47101 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99817 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00099 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99928 * 179.97438 * 13 11 10 15 15 H 1.09001 * 112.90323 * 336.24445 * 14 13 11 16 16 C 1.53774 * 113.61603 * 107.50241 * 14 13 11 17 17 C 1.53778 * 87.08507 * 89.11410 * 16 14 13 18 18 H 1.08996 * 113.68897 * 270.87528 * 17 16 14 19 19 C 1.50697 * 113.61583 * 139.98014 * 17 16 14 20 20 C 1.38451 * 119.98947 * 142.50535 * 19 17 16 21 21 F 1.35097 * 120.00719 * 359.97438 * 20 19 17 22 22 C 1.38441 * 119.97581 * 180.02562 * 20 19 17 23 23 C 1.38395 * 119.94711 * 0.02562 * 22 20 19 24 24 F 1.35100 * 120.00942 * 179.97438 * 23 22 20 25 25 C 1.38497 * 119.97917 * 359.97438 * 23 22 20 26 26 C 1.38183 * 120.02410 * 0.26183 * 25 23 22 27 27 C 1.53780 * 113.61286 * 205.00077 * 14 13 11 28 28 C 1.38734 * 119.88481 * 0.26876 * 7 6 5 29 29 C 1.38144 * 119.94615 * 359.47808 * 28 7 6 30 30 H 0.96697 * 113.99341 * 60.00045 * 1 2 3 31 31 H 1.09006 * 109.46934 * 239.99616 * 2 1 3 32 32 H 1.48496 * 110.00053 * 59.99517 * 3 2 1 33 33 H 1.48496 * 110.00277 * 181.32109 * 3 2 1 34 34 H 1.08005 * 119.96997 * 359.97438 * 5 4 2 35 35 H 1.07999 * 120.03093 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.46797 * 60.00107 * 9 8 7 37 37 H 1.08990 * 109.47297 * 299.99697 * 9 8 7 38 38 H 1.08989 * 109.47414 * 60.00217 * 10 9 8 39 39 H 1.09001 * 109.47185 * 299.99497 * 10 9 8 40 40 H 0.97003 * 120.00155 * 359.97438 * 13 11 10 41 41 H 1.08999 * 113.61287 * 334.56021 * 16 14 13 42 42 H 1.08999 * 113.61338 * 203.66499 * 16 14 13 43 43 H 1.07993 * 120.02131 * 180.02562 * 22 20 19 44 44 H 1.08002 * 119.98574 * 179.97438 * 25 23 22 45 45 H 1.07995 * 119.97787 * 179.74752 * 26 25 23 46 46 H 1.09001 * 113.61528 * 156.33687 * 27 14 13 47 47 H 1.08994 * 113.61758 * 25.42529 * 27 14 13 48 48 H 1.08007 * 120.02936 * 179.72651 * 28 7 6 49 49 H 1.08001 * 119.97379 * 180.27395 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0502 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.6839 -2.0605 1.3973 6 6 2.1429 -2.7139 2.5246 7 6 2.8521 -2.0142 3.4900 8 8 3.3051 -2.6548 4.5997 9 6 4.0284 -1.8715 5.5512 10 6 4.4536 -2.7579 6.7235 11 6 5.2158 -1.9317 7.7274 12 8 5.4010 -0.7503 7.5247 13 7 5.6924 -2.5058 8.8497 14 6 6.4338 -1.7027 9.8253 15 1 6.8874 -0.8142 9.3861 16 6 5.6464 -1.4190 11.1153 17 6 6.2328 -2.7288 11.6680 18 1 5.6271 -3.6075 11.4468 19 6 6.6356 -2.6454 13.1178 20 6 6.4368 -3.7302 13.9547 21 9 5.8814 -4.8632 13.4720 22 6 6.8064 -3.6532 15.2867 23 6 7.3738 -2.4913 15.7800 24 9 7.7345 -2.4145 17.0797 25 6 7.5718 -1.4073 14.9410 26 6 7.1980 -1.4837 13.6129 27 6 7.4028 -2.5252 10.6909 28 6 3.0938 -0.6583 3.3232 29 6 2.6373 -0.0106 2.1916 30 1 -0.3932 0.4417 -0.7651 31 1 1.7924 -0.5139 -0.8900 32 1 1.5616 2.4678 1.2084 33 1 3.5347 1.7702 -0.0322 34 1 1.1306 -2.6045 0.6461 35 1 1.9490 -3.7683 2.6547 36 1 3.3919 -1.0659 5.9173 37 1 4.9130 -1.4481 5.0758 38 1 5.0898 -3.5637 6.3577 39 1 3.5686 -3.1809 7.1989 40 1 5.5445 -3.4507 9.0116 41 1 4.5650 -1.4469 10.9818 42 1 5.9854 -0.5301 11.6472 43 1 6.6521 -4.4990 15.9400 44 1 8.0142 -0.5004 15.3260 45 1 7.3489 -0.6366 12.9603 46 1 8.2220 -1.9387 11.1069 47 1 7.7393 -3.4462 10.2149 48 1 3.6419 -0.1104 4.0754 49 1 2.8290 1.0439 2.0591 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_4549602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:08:32 Heat of formation + Delta-G solvation = -110.073747 kcal Electronic energy + Delta-G solvation = -33635.548942 eV Core-core repulsion = 28552.551031 eV Total energy + Delta-G solvation = -5082.997911 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.148 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -50.10183 -50.07042 -41.70723 -41.34550 -40.35402 -39.20988 -38.70451 -37.24497 -34.69972 -33.44295 -32.22892 -31.92488 -31.71033 -31.25064 -26.97111 -26.75731 -26.20250 -25.46028 -24.30820 -23.70563 -22.85775 -22.20008 -21.61264 -20.29057 -19.68600 -19.34441 -18.37025 -18.32400 -18.08072 -17.57342 -17.36582 -17.19276 -17.07598 -16.90404 -16.77232 -16.62882 -16.40086 -16.10499 -15.90292 -15.56385 -15.51953 -15.31627 -15.27201 -14.78067 -14.67822 -14.47762 -14.27509 -14.00920 -13.91913 -13.78262 -13.68534 -13.58585 -13.46984 -13.06604 -12.87576 -12.83565 -12.58747 -12.48838 -12.08385 -12.02968 -11.96509 -11.81476 -11.76006 -11.35077 -11.12643 -10.29798 -10.19860 -10.18565 -10.10746 -9.62492 -9.33625 -4.97894 -0.15561 -0.06226 0.11001 0.16483 1.29614 1.44674 1.60670 1.61088 1.95400 2.25188 2.39270 2.49664 2.79554 3.27155 3.38350 3.42047 3.46146 3.49890 3.59100 3.61145 3.64812 3.71159 3.80855 3.84264 3.88700 3.91588 3.95116 4.05214 4.10480 4.14669 4.21850 4.32869 4.42789 4.55546 4.58740 4.61099 4.67138 4.69477 4.71098 4.80199 4.80880 4.82532 4.88388 4.88834 4.97662 5.04955 5.04969 5.08634 5.11836 5.23810 5.35685 5.54019 5.58030 5.69809 6.18725 6.39828 6.92775 7.09593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.070 4.070 3 Si 0.769 3.231 4 C -0.130 4.130 5 C -0.054 4.054 6 C -0.152 4.152 7 C 0.124 3.876 8 O -0.316 6.316 9 C 0.071 3.929 10 C -0.132 4.132 11 C 0.523 3.477 12 O -0.582 6.582 13 N -0.699 5.699 14 C 0.114 3.886 15 H 0.093 0.907 16 C -0.139 4.139 17 C -0.072 4.072 18 H 0.104 0.896 19 C -0.112 4.112 20 C 0.116 3.884 21 F -0.137 7.137 22 C -0.198 4.198 23 C 0.107 3.893 24 F -0.142 7.142 25 C -0.155 4.155 26 C -0.056 4.056 27 C -0.123 4.123 28 C -0.211 4.211 29 C -0.103 4.103 30 H 0.403 0.597 31 H 0.098 0.902 32 H -0.301 1.301 33 H -0.292 1.292 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.418 0.582 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.151 0.849 44 H 0.162 0.838 45 H 0.171 0.829 46 H 0.111 0.889 47 H 0.086 0.914 48 H 0.136 0.864 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.670 -1.030 -3.225 3.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.180 4.180 3 Si 0.676 3.324 4 C -0.130 4.130 5 C -0.072 4.072 6 C -0.170 4.170 7 C 0.079 3.921 8 O -0.230 6.230 9 C -0.004 4.004 10 C -0.172 4.172 11 C 0.311 3.689 12 O -0.462 6.462 13 N -0.351 5.351 14 C 0.009 3.991 15 H 0.111 0.889 16 C -0.178 4.178 17 C -0.090 4.090 18 H 0.122 0.878 19 C -0.113 4.113 20 C 0.097 3.903 21 F -0.116 7.116 22 C -0.218 4.218 23 C 0.088 3.912 24 F -0.121 7.121 25 C -0.174 4.174 26 C -0.074 4.074 27 C -0.161 4.161 28 C -0.230 4.230 29 C -0.120 4.120 30 H 0.254 0.746 31 H 0.116 0.884 32 H -0.230 1.230 33 H -0.219 1.219 34 H 0.172 0.828 35 H 0.171 0.829 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.256 0.744 41 H 0.087 0.913 42 H 0.127 0.873 43 H 0.168 0.832 44 H 0.179 0.821 45 H 0.188 0.812 46 H 0.129 0.871 47 H 0.105 0.895 48 H 0.154 0.846 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.345 -0.175 -2.312 2.681 hybrid contribution 0.090 -0.879 1.094 1.407 sum 1.435 -1.054 -1.218 2.157 Atomic orbital electron populations 1.86446 1.17181 1.82325 1.51423 1.24675 0.85846 1.10321 0.97150 0.94582 0.77245 0.75998 0.84525 1.19645 1.01345 0.95156 0.96862 1.21095 0.96074 0.93236 0.96818 1.20794 1.01042 1.01747 0.93453 1.19137 0.94720 0.90836 0.87407 1.85960 1.69235 1.38548 1.29248 1.22469 0.95696 0.93738 0.88513 1.21439 1.03174 0.99131 0.93421 1.20591 0.78475 0.87481 0.82360 1.90743 1.59601 1.18069 1.77771 1.45559 1.55714 1.13965 1.19881 1.21867 0.93492 0.95522 0.88260 0.88892 1.23590 1.00698 0.97621 0.95842 1.21552 0.98856 0.99981 0.88634 0.87764 1.19982 1.01785 0.93093 0.96439 1.17308 0.98025 0.83321 0.91677 1.91501 1.82828 1.48984 1.88239 1.21170 1.04860 0.99944 0.95825 1.17571 0.99563 0.95282 0.78807 1.91526 1.89542 1.96735 1.34290 1.21519 1.02843 0.98918 0.94090 1.21069 0.94433 0.97412 0.94460 1.23414 0.96360 1.01384 0.94908 1.21325 1.06702 0.94481 1.00477 1.20835 0.98410 0.98777 0.94014 0.74555 0.88448 1.22985 1.21944 0.82836 0.82927 0.91979 0.91733 0.85221 0.85434 0.74449 0.91292 0.87345 0.83160 0.82058 0.81158 0.87077 0.89518 0.84642 0.86674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.26 12.81 -148.98 -1.91 -2.17 16 2 C -0.07 -0.04 2.79 71.24 0.20 0.16 16 3 Si 0.77 -0.07 29.85 68.60 2.05 1.98 16 4 C -0.13 -0.84 5.38 -19.85 -0.11 -0.94 16 5 C -0.05 -0.25 9.68 22.25 0.22 -0.03 16 6 C -0.15 -0.75 9.99 22.37 0.22 -0.53 16 7 C 0.12 0.90 6.69 22.51 0.15 1.05 16 8 O -0.32 -1.59 10.14 -92.42 -0.94 -2.52 16 9 C 0.07 0.17 4.03 71.98 0.29 0.46 16 10 C -0.13 0.53 6.07 29.85 0.18 0.71 16 11 C 0.52 0.12 7.83 87.66 0.69 0.81 16 12 O -0.58 -5.47 15.58 -3.04 -0.05 -5.52 16 13 N -0.70 3.60 5.26 -440.04 -2.32 1.28 16 14 C 0.11 -0.52 4.32 45.51 0.20 -0.32 16 15 H 0.09 -0.07 7.47 -2.39 -0.02 -0.08 16 16 C -0.14 0.77 7.25 31.12 0.23 1.00 16 17 C -0.07 0.43 3.78 -11.01 -0.04 0.39 16 18 H 0.10 -0.60 7.44 -2.39 -0.02 -0.62 16 19 C -0.11 0.36 5.29 -19.81 -0.10 0.25 16 20 C 0.12 0.08 7.24 22.37 0.16 0.24 16 21 F -0.14 -0.35 16.36 44.97 0.74 0.39 16 22 C -0.20 -0.25 10.01 22.36 0.22 -0.02 16 23 C 0.11 0.13 7.30 22.37 0.16 0.30 16 24 F -0.14 -0.63 17.27 44.97 0.78 0.15 16 25 C -0.16 0.50 10.02 22.32 0.22 0.73 16 26 C -0.06 0.32 8.62 22.26 0.19 0.51 16 27 C -0.12 0.96 7.29 31.12 0.23 1.18 16 28 C -0.21 -1.74 9.04 22.37 0.20 -1.54 16 29 C -0.10 -0.90 8.66 22.26 0.19 -0.70 16 30 H 0.40 -4.14 8.74 -74.06 -0.65 -4.79 16 31 H 0.10 -0.41 7.96 -2.38 -0.02 -0.43 16 32 H -0.30 -2.42 7.04 99.48 0.70 -1.72 16 33 H -0.29 -1.67 7.11 99.48 0.71 -0.97 16 34 H 0.15 0.02 8.06 -2.91 -0.02 0.00 16 35 H 0.15 0.12 8.06 -2.91 -0.02 0.10 16 36 H 0.06 0.27 7.61 -2.39 -0.02 0.25 16 37 H 0.06 0.25 7.63 -2.39 -0.02 0.23 16 38 H 0.13 -1.03 8.14 -2.39 -0.02 -1.05 16 39 H 0.13 -0.96 8.14 -2.39 -0.02 -0.98 16 40 H 0.42 -4.43 8.70 -92.71 -0.81 -5.24 16 41 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H 0.11 -0.83 6.29 -2.39 -0.02 -0.85 16 43 H 0.15 -0.02 8.06 -2.91 -0.02 -0.05 16 44 H 0.16 -1.13 8.06 -2.91 -0.02 -1.16 16 45 H 0.17 -1.87 6.64 -2.91 -0.02 -1.89 16 46 H 0.11 -1.04 7.73 -2.39 -0.02 -1.05 16 47 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 48 H 0.14 0.89 6.30 -2.91 -0.02 0.88 16 49 H 0.12 0.96 4.86 -2.91 -0.01 0.95 16 Total: 0.00 -23.86 414.89 1.66 -22.20 By element: Atomic # 1 Polarization: -19.08 SS G_CDS: -0.39 Total: -19.47 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 3.70 Total: 3.68 kcal Atomic # 7 Polarization: 3.60 SS G_CDS: -2.32 Total: 1.28 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -2.89 Total: -10.21 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 1.51 Total: 0.54 kcal Atomic # 14 Polarization: -0.07 SS G_CDS: 2.05 Total: 1.98 kcal Total: -23.86 1.66 -22.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_4549602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.874 kcal (2) G-P(sol) polarization free energy of solvation -23.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds