Wall clock time and date at job start Sun Mar 7 2021 00:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47509 * 2 1 4 4 C 1.50702 * 109.47007 * 239.99614 * 2 1 3 5 5 C 1.38248 * 119.96893 * 120.00355 * 4 2 1 6 6 C 1.38287 * 120.11128 * 179.97438 * 5 4 2 7 7 C 1.38118 * 120.05712 * 0.04425 * 6 5 4 8 8 C 1.38757 * 119.94161 * 359.97438 * 7 6 5 9 9 O 1.35909 * 120.05209 * 180.02562 * 8 7 6 10 10 C 1.42889 * 116.99987 * 0.02562 * 9 8 7 11 11 C 1.53006 * 109.46965 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47172 * 179.97438 * 11 10 9 13 13 O 1.21278 * 120.00061 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99985 * 180.02562 * 12 11 10 15 15 C 1.46502 * 119.99940 * 180.02562 * 14 12 11 16 16 H 1.08999 * 112.84792 * 25.33288 * 15 14 12 17 17 C 1.53781 * 113.61259 * 156.53363 * 15 14 12 18 18 C 1.53778 * 87.08288 * 89.11738 * 17 15 14 19 19 H 1.09005 * 113.61086 * 270.88316 * 18 17 15 20 20 C 1.50698 * 113.61626 * 140.06568 * 18 17 15 21 21 C 1.38455 * 119.98664 * 119.99730 * 20 18 17 22 22 F 1.35099 * 120.01392 * 0.02562 * 21 20 18 23 23 C 1.38438 * 119.97202 * 180.02562 * 21 20 18 24 24 C 1.38402 * 119.95312 * 0.02562 * 23 21 20 25 25 F 1.35098 * 120.01268 * 179.97438 * 24 23 21 26 26 C 1.38489 * 119.97084 * 359.97438 * 24 23 21 27 27 C 1.38191 * 120.02746 * 359.72690 * 26 24 23 28 28 C 1.53782 * 113.61508 * 254.13921 * 15 14 12 29 29 C 1.38164 * 119.97513 * 299.72641 * 4 2 1 30 30 H 0.96700 * 113.99509 * 59.99951 * 1 2 3 31 31 H 1.09004 * 109.46926 * 120.00048 * 2 1 3 32 32 H 1.48502 * 109.99691 * 59.99915 * 3 2 1 33 33 H 1.48495 * 109.99988 * 181.31552 * 3 2 1 34 34 H 1.07998 * 119.94282 * 359.97438 * 5 4 2 35 35 H 1.08003 * 119.97273 * 180.02562 * 6 5 4 36 36 H 1.08001 * 120.03113 * 179.97438 * 7 6 5 37 37 H 1.08999 * 109.47340 * 299.99231 * 10 9 8 38 38 H 1.09006 * 109.47552 * 59.99777 * 10 9 8 39 39 H 1.08994 * 109.47505 * 300.00312 * 11 10 9 40 40 H 1.09001 * 109.46876 * 60.00270 * 11 10 9 41 41 H 0.96998 * 119.99648 * 0.02562 * 14 12 11 42 42 H 1.09008 * 113.61035 * 203.66307 * 17 15 14 43 43 H 1.08998 * 113.61350 * 334.56311 * 17 15 14 44 44 H 1.08001 * 120.02396 * 179.97438 * 23 21 20 45 45 H 1.07999 * 119.98765 * 179.97438 * 26 24 23 46 46 H 1.07998 * 119.97660 * 180.29346 * 27 26 24 47 47 H 1.09002 * 113.61534 * 25.43093 * 28 15 14 48 48 H 1.09000 * 113.61939 * 156.33732 * 28 15 14 49 49 H 1.07999 * 120.02951 * 0.02562 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7262 -0.0381 -2.1401 6 6 3.1891 -0.6874 -3.2698 7 6 2.8576 -2.0095 -3.4926 8 6 2.0597 -2.6865 -2.5814 9 8 1.7325 -3.9877 -2.7981 10 6 2.2453 -4.5965 -3.9847 11 6 1.7753 -6.0509 -4.0557 12 6 2.3156 -6.6929 -5.3075 13 8 3.0087 -6.0506 -6.0677 14 7 2.0285 -7.9808 -5.5822 15 6 2.5542 -8.6050 -6.7988 16 1 3.4682 -8.1311 -7.1567 17 6 2.6475 -10.1376 -6.7138 18 6 1.2076 -10.1766 -7.2522 19 1 0.4483 -10.1418 -6.4709 20 6 0.9669 -11.2769 -8.2534 21 6 0.0149 -12.2491 -7.9978 22 9 -0.6986 -12.2112 -6.8512 23 6 -0.2055 -13.2600 -8.9175 24 6 0.5265 -13.2979 -10.0914 25 9 0.3128 -14.2842 -10.9896 26 6 1.4783 -12.3243 -10.3450 27 6 1.6932 -11.3122 -9.4290 28 6 1.4948 -8.8064 -7.8951 29 6 1.6019 -2.0349 -1.4456 30 1 -0.3932 0.4417 -0.7651 31 1 1.7923 -0.5139 0.8900 32 1 1.5616 2.4678 1.2085 33 1 3.5347 1.7701 -0.0320 34 1 2.9859 0.9960 -1.9680 35 1 3.8103 -0.1600 -3.9788 36 1 3.2191 -2.5161 -4.3754 37 1 1.8821 -4.0540 -4.8576 38 1 3.3348 -4.5676 -3.9664 39 1 2.1387 -6.5932 -3.1829 40 1 0.6858 -6.0801 -4.0740 41 1 1.4739 -8.4943 -4.9743 42 1 3.3804 -10.5689 -7.3958 43 1 2.7432 -10.5134 -5.6952 44 1 -0.9477 -14.0191 -8.7187 45 1 2.0500 -12.3539 -11.2608 46 1 2.4322 -10.5507 -9.6297 47 1 0.6603 -8.1082 -7.8294 48 1 1.9130 -8.8744 -8.8994 49 1 0.9843 -2.5610 -0.7327 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_4549614.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:08:37 Heat of formation + Delta-G solvation = -111.160907 kcal Electronic energy + Delta-G solvation = -33672.378532 eV Core-core repulsion = 28589.333479 eV Total energy + Delta-G solvation = -5083.045053 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.148 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -50.08664 -50.05555 -41.65314 -41.25899 -40.31497 -39.17826 -38.66800 -37.26274 -34.65555 -33.27150 -32.45974 -31.89619 -31.47349 -30.73221 -27.11972 -26.73161 -26.43966 -25.23381 -24.21128 -23.67483 -22.90047 -22.18347 -21.49831 -20.26177 -19.42931 -19.29482 -18.34225 -18.13627 -17.77330 -17.50351 -17.22914 -17.06464 -17.05316 -16.99302 -16.81897 -16.55795 -16.38615 -16.21602 -15.96378 -15.57258 -15.46427 -15.25231 -15.19776 -14.89450 -14.60132 -14.41539 -14.24002 -14.16088 -13.89263 -13.72029 -13.57552 -13.43343 -13.20890 -12.96073 -12.86368 -12.78639 -12.56889 -12.37906 -12.06034 -11.99373 -11.82206 -11.73922 -11.62789 -11.31968 -11.08111 -10.50200 -10.16307 -10.08387 -9.93143 -9.60700 -9.27875 -4.97827 -0.13775 -0.04514 0.19363 0.38498 1.30384 1.49075 1.65207 1.69159 1.97367 2.27015 2.46713 2.66392 2.81242 3.29210 3.43903 3.48273 3.50540 3.55165 3.63518 3.66121 3.67317 3.83949 3.85448 3.88997 3.92696 3.96978 4.07355 4.09412 4.16855 4.23004 4.27788 4.38283 4.49991 4.59298 4.62491 4.66357 4.69536 4.73653 4.75234 4.82774 4.84811 4.90319 4.91195 4.97431 5.00272 5.07089 5.11566 5.25294 5.26299 5.37463 5.43448 5.57229 5.69908 5.71600 6.32255 6.43750 6.75854 7.13261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.078 4.078 3 Si 0.786 3.214 4 C -0.084 4.084 5 C -0.158 4.158 6 C -0.075 4.075 7 C -0.211 4.211 8 C 0.117 3.883 9 O -0.325 6.325 10 C 0.074 3.926 11 C -0.134 4.134 12 C 0.525 3.475 13 O -0.579 6.579 14 N -0.701 5.701 15 C 0.115 3.885 16 H 0.094 0.906 17 C -0.123 4.123 18 C -0.073 4.073 19 H 0.103 0.897 20 C -0.112 4.112 21 C 0.115 3.885 22 F -0.137 7.137 23 C -0.199 4.199 24 C 0.107 3.893 25 F -0.143 7.143 26 C -0.155 4.155 27 C -0.056 4.056 28 C -0.138 4.138 29 C -0.142 4.142 30 H 0.396 0.604 31 H 0.106 0.894 32 H -0.299 1.299 33 H -0.284 1.284 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.138 0.862 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.417 0.583 42 H 0.111 0.889 43 H 0.085 0.915 44 H 0.150 0.850 45 H 0.162 0.838 46 H 0.172 0.828 47 H 0.068 0.932 48 H 0.109 0.891 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.976 0.470 -2.622 2.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.188 4.188 3 Si 0.691 3.309 4 C -0.085 4.085 5 C -0.175 4.175 6 C -0.093 4.093 7 C -0.229 4.229 8 C 0.072 3.928 9 O -0.240 6.240 10 C -0.001 4.001 11 C -0.174 4.174 12 C 0.312 3.688 13 O -0.459 6.459 14 N -0.353 5.353 15 C 0.010 3.990 16 H 0.112 0.888 17 C -0.161 4.161 18 C -0.091 4.091 19 H 0.121 0.879 20 C -0.113 4.113 21 C 0.096 3.904 22 F -0.116 7.116 23 C -0.218 4.218 24 C 0.087 3.913 25 F -0.121 7.121 26 C -0.173 4.173 27 C -0.073 4.073 28 C -0.177 4.177 29 C -0.161 4.161 30 H 0.246 0.754 31 H 0.124 0.876 32 H -0.227 1.227 33 H -0.211 1.211 34 H 0.165 0.835 35 H 0.171 0.829 36 H 0.155 0.845 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.254 0.746 42 H 0.130 0.870 43 H 0.104 0.896 44 H 0.168 0.832 45 H 0.180 0.820 46 H 0.189 0.811 47 H 0.087 0.913 48 H 0.127 0.873 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.864 1.001 -2.070 2.960 hybrid contribution -0.545 -1.520 0.355 1.654 sum 1.319 -0.519 -1.715 2.225 Atomic orbital electron populations 1.86468 1.17166 1.82237 1.50465 1.25306 0.85373 1.11296 0.96799 0.93531 0.77818 0.74851 0.84675 1.20240 0.97670 0.93578 0.96968 1.21179 1.00347 1.00733 0.95253 1.21256 0.97526 0.93446 0.97027 1.21555 1.03065 0.97123 1.01201 1.19143 0.95276 0.83503 0.94892 1.85954 1.71385 1.22807 1.43810 1.22445 0.98922 0.93167 0.85588 1.21445 1.04901 0.94046 0.97009 1.20551 0.79324 0.82058 0.86859 1.90736 1.40001 1.63538 1.51597 1.45581 1.53183 1.11607 1.24902 1.21861 0.97671 0.94042 0.85447 0.88799 1.23409 0.95569 0.93687 1.03429 1.21603 0.98891 0.92099 0.96517 0.87882 1.19984 0.96663 0.96672 0.97943 1.17318 0.93446 0.96498 0.83138 1.91502 1.76705 1.96113 1.47277 1.21170 1.04382 1.01750 0.94540 1.17574 0.98012 0.88042 0.87636 1.91524 1.94061 1.60207 1.66320 1.21523 0.98663 0.94355 1.02805 1.21074 0.98101 0.97466 0.90678 1.23633 0.99327 0.95199 0.99511 1.20313 1.03922 0.94689 0.97187 0.75441 0.87615 1.22680 1.21064 0.83462 0.82874 0.84460 0.91479 0.91661 0.85692 0.85675 0.74563 0.87032 0.89604 0.83224 0.82028 0.81067 0.91278 0.87296 0.85589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.83 12.77 -148.98 -1.90 -2.73 16 2 C -0.08 -0.06 2.82 71.24 0.20 0.14 16 3 Si 0.79 -1.55 29.79 68.60 2.04 0.49 16 4 C -0.08 -0.17 5.39 -19.88 -0.11 -0.28 16 5 C -0.16 0.06 8.67 22.28 0.19 0.25 16 6 C -0.07 0.01 10.04 22.25 0.22 0.23 16 7 C -0.21 -0.57 9.04 22.37 0.20 -0.36 16 8 C 0.12 0.61 6.69 22.51 0.15 0.76 16 9 O -0.33 -1.43 10.14 -92.53 -0.94 -2.37 16 10 C 0.07 0.06 4.03 71.98 0.29 0.35 16 11 C -0.13 0.61 6.07 29.85 0.18 0.79 16 12 C 0.52 -0.39 7.83 87.66 0.69 0.29 16 13 O -0.58 -4.52 15.60 -3.02 -0.05 -4.57 16 14 N -0.70 4.05 5.26 -440.04 -2.32 1.73 16 15 C 0.12 -0.62 4.30 45.52 0.20 -0.42 16 16 H 0.09 -0.17 7.50 -2.39 -0.02 -0.19 16 17 C -0.12 1.02 7.29 31.12 0.23 1.25 16 18 C -0.07 0.47 3.79 -10.92 -0.04 0.42 16 19 H 0.10 -0.61 7.44 -2.38 -0.02 -0.63 16 20 C -0.11 0.40 5.30 -19.82 -0.10 0.29 16 21 C 0.12 0.05 7.24 22.37 0.16 0.21 16 22 F -0.14 -0.33 16.36 44.97 0.74 0.40 16 23 C -0.20 -0.21 10.01 22.36 0.22 0.02 16 24 C 0.11 0.10 7.30 22.37 0.16 0.27 16 25 F -0.14 -0.59 17.27 44.97 0.78 0.19 16 26 C -0.15 0.57 10.02 22.32 0.22 0.79 16 27 C -0.06 0.34 8.62 22.26 0.19 0.53 16 28 C -0.14 0.86 7.27 31.21 0.23 1.09 16 29 C -0.14 -0.72 9.56 22.36 0.21 -0.51 16 30 H 0.40 -2.64 8.70 -74.06 -0.64 -3.28 16 31 H 0.11 0.22 7.96 -2.38 -0.02 0.20 16 32 H -0.30 -1.60 7.11 99.48 0.71 -0.90 16 33 H -0.28 -0.67 7.11 99.48 0.71 0.03 16 34 H 0.15 -0.73 4.87 -2.91 -0.01 -0.75 16 35 H 0.15 -0.79 8.06 -2.91 -0.02 -0.81 16 36 H 0.14 0.14 6.30 -2.91 -0.02 0.12 16 37 H 0.07 0.12 7.62 -2.39 -0.02 0.10 16 38 H 0.07 0.13 7.62 -2.38 -0.02 0.11 16 39 H 0.13 -0.98 8.14 -2.39 -0.02 -0.99 16 40 H 0.13 -0.98 8.14 -2.39 -0.02 -0.99 16 41 H 0.42 -4.54 8.70 -92.71 -0.81 -5.34 16 42 H 0.11 -1.11 7.73 -2.38 -0.02 -1.13 16 43 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 44 H 0.15 -0.04 8.06 -2.91 -0.02 -0.06 16 45 H 0.16 -1.21 8.06 -2.91 -0.02 -1.24 16 46 H 0.17 -2.00 6.65 -2.91 -0.02 -2.02 16 47 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 48 H 0.11 -0.93 6.31 -2.39 -0.02 -0.94 16 49 H 0.13 0.72 8.06 -2.91 -0.02 0.70 16 Total: 0.00 -21.49 414.87 1.67 -19.82 By element: Atomic # 1 Polarization: -18.70 SS G_CDS: -0.39 Total: -19.08 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 3.70 Total: 6.12 kcal Atomic # 7 Polarization: 4.05 SS G_CDS: -2.32 Total: 1.73 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -2.89 Total: -9.67 kcal Atomic # 9 Polarization: -0.92 SS G_CDS: 1.51 Total: 0.59 kcal Atomic # 14 Polarization: -1.55 SS G_CDS: 2.04 Total: 0.49 kcal Total: -21.49 1.67 -19.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_4549614.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.337 kcal (2) G-P(sol) polarization free energy of solvation -21.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds