Wall clock time and date at job start Sun Mar 7 2021 00:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86306 * 109.46859 * 2 1 4 4 C 1.50700 * 109.47200 * 119.99644 * 2 1 3 5 5 C 1.38264 * 119.94093 * 65.00454 * 4 2 1 6 6 C 1.38148 * 120.05111 * 180.02562 * 5 4 2 7 7 C 1.38730 * 119.94768 * 359.97438 * 6 5 4 8 8 O 1.35898 * 120.05470 * 180.02562 * 7 6 5 9 9 C 1.42905 * 116.99860 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47210 * 179.97438 * 9 8 7 11 11 C 1.36414 * 125.80381 * 89.98387 * 10 9 8 12 12 C 1.47380 * 127.19000 * 0.03934 * 11 10 9 13 13 O 1.21614 * 120.00090 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00190 * 180.02562 * 12 11 10 15 15 C 1.46501 * 120.00377 * 179.97438 * 14 12 11 16 16 H 1.09003 * 112.84838 * 334.66472 * 15 14 12 17 17 C 1.53782 * 113.61420 * 105.85510 * 15 14 12 18 18 C 1.54060 * 86.98209 * 89.16561 * 17 15 14 19 19 H 1.08998 * 113.61171 * 270.87993 * 18 17 15 20 20 C 1.50696 * 113.69402 * 139.98950 * 18 17 15 21 21 C 1.38457 * 119.98894 * 142.47022 * 20 18 17 22 22 F 1.35100 * 120.00804 * 0.02562 * 21 20 18 23 23 C 1.38429 * 119.97836 * 179.97438 * 21 20 18 24 24 C 1.38399 * 119.94866 * 359.97438 * 23 21 20 25 25 F 1.35107 * 120.01169 * 179.97438 * 24 23 21 26 26 C 1.38491 * 119.97534 * 359.97438 * 24 23 21 27 27 C 1.38190 * 120.02461 * 359.72864 * 26 24 23 28 28 C 1.53775 * 113.61706 * 203.46586 * 15 14 12 29 29 C 1.47014 * 105.61702 * 180.02562 * 11 10 9 30 30 C 1.34172 * 105.95795 * 0.02562 * 29 11 10 31 31 O 1.33654 * 125.80265 * 270.03027 * 10 9 8 32 32 C 1.38731 * 119.88489 * 0.27716 * 7 6 5 33 33 C 1.38142 * 119.94529 * 359.47148 * 32 7 6 34 34 H 0.96695 * 114.00024 * 299.99710 * 1 2 3 35 35 H 1.08998 * 109.47707 * 240.00237 * 2 1 3 36 36 H 1.48499 * 109.99652 * 299.99765 * 3 2 1 37 37 H 1.48497 * 110.00170 * 61.31494 * 3 2 1 38 38 H 1.07999 * 119.97590 * 359.97128 * 5 4 2 39 39 H 1.08006 * 120.02385 * 179.97438 * 6 5 4 40 40 H 1.08999 * 109.46618 * 60.00152 * 9 8 7 41 41 H 1.08996 * 109.47089 * 300.00534 * 9 8 7 42 42 H 0.96999 * 119.99847 * 359.97438 * 14 12 11 43 43 H 1.08997 * 113.61712 * 203.66482 * 17 15 14 44 44 H 1.08996 * 113.61923 * 334.57591 * 17 15 14 45 45 H 1.08003 * 120.02682 * 179.97438 * 23 21 20 46 46 H 1.08001 * 119.98921 * 180.02562 * 26 24 23 47 47 H 1.08001 * 119.97502 * 180.29281 * 27 26 24 48 48 H 1.09002 * 113.60925 * 25.43288 * 28 15 14 49 49 H 1.09003 * 113.61602 * 156.24958 * 28 15 14 50 50 H 1.08001 * 127.02205 * 180.02562 * 29 11 10 51 51 H 1.08005 * 125.44243 * 180.02562 * 30 29 11 52 52 H 1.08007 * 120.02721 * 179.72294 * 32 7 6 53 53 H 1.08004 * 119.97481 * 180.27449 * 33 32 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 1.6841 -2.0604 1.3972 6 6 2.1431 -2.7137 2.5246 7 6 2.8531 -2.0142 3.4896 8 8 3.3061 -2.6548 4.5992 9 6 4.0301 -1.8717 5.5503 10 6 4.4488 -2.7446 6.7051 11 6 5.6157 -3.4457 6.7935 12 6 6.7002 -3.4996 5.7970 13 8 6.6047 -2.8720 4.7597 14 7 7.7974 -4.2453 6.0348 15 6 8.8752 -4.2993 5.0440 16 1 8.5299 -4.0920 4.0311 17 6 10.1226 -3.4949 5.4463 18 6 10.6245 -4.7754 6.1405 19 1 10.3009 -4.8653 7.1774 20 6 12.1010 -5.0204 5.9650 21 6 12.8442 -5.5458 7.0084 22 9 12.2457 -5.8392 8.1836 23 6 14.2004 -5.7713 6.8468 24 6 14.8118 -5.4717 5.6419 25 9 16.1355 -5.6908 5.4829 26 6 14.0663 -4.9473 4.5992 27 6 12.7114 -4.7283 4.7597 28 6 9.7478 -5.5610 5.1511 29 6 5.5654 -4.1360 8.0905 30 6 4.3945 -3.7905 8.6471 31 8 3.7397 -2.9642 7.8166 32 6 3.0953 -0.6585 3.3223 33 6 2.6387 -0.0109 2.1908 34 1 -0.3933 0.4416 0.7650 35 1 1.7925 -0.5138 -0.8900 36 1 1.5615 2.4678 -1.2085 37 1 1.5878 2.4587 1.2241 38 1 1.1310 -2.6045 0.6460 39 1 1.9494 -3.7683 2.6546 40 1 3.3942 -1.0657 5.9165 41 1 4.9148 -1.4488 5.0745 42 1 7.8734 -4.7462 6.8619 43 1 10.7364 -3.1883 4.5993 44 1 9.9115 -2.6772 6.1352 45 1 14.7809 -6.1807 7.6603 46 1 14.5432 -4.7138 3.6587 47 1 12.1299 -4.3238 3.9444 48 1 9.2340 -6.4101 5.6020 49 1 10.2581 -5.8191 4.2232 50 1 6.3175 -4.7880 8.5097 51 1 4.0364 -4.1235 9.6101 52 1 3.6440 -0.1107 4.0743 53 1 2.8309 1.0436 2.0580 There are 80 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 80 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_4549634.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:09:01 Heat of formation + Delta-G solvation = -81.727302 kcal Electronic energy + Delta-G solvation = -41537.269016 eV Core-core repulsion = 35752.139686 eV Total energy + Delta-G solvation = -5785.129330 eV No. of doubly occupied orbitals = 80 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 442.147 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -50.06978 -50.03730 -43.72326 -41.48966 -41.29468 -40.13645 -39.26621 -38.64682 -37.30432 -34.82403 -33.87439 -32.84145 -31.98667 -31.87584 -31.43049 -31.37992 -28.00981 -26.72047 -26.44673 -26.10420 -24.80756 -24.12556 -23.80009 -22.94867 -22.42138 -22.17551 -21.06818 -20.16125 -19.51138 -19.38777 -19.14714 -18.38264 -18.21530 -17.62333 -17.30046 -17.15718 -17.04450 -17.01478 -16.86209 -16.69554 -16.60312 -16.36975 -16.36311 -16.10929 -15.85230 -15.77082 -15.55700 -15.47775 -15.19159 -15.02765 -14.71325 -14.57044 -14.38577 -14.20532 -13.97529 -13.91597 -13.70640 -13.62914 -13.55533 -13.45962 -13.42536 -13.09050 -12.83516 -12.55578 -12.32878 -12.15092 -12.08154 -12.02070 -11.73590 -11.61664 -11.31555 -11.15263 -10.96741 -10.58203 -10.16820 -10.07989 -10.05158 -9.83095 -9.58980 -9.25440 -4.90816 -0.12162 -0.03829 -0.02604 0.26563 0.29617 1.02812 1.33009 1.51527 1.59772 1.95659 2.03304 2.11933 2.28874 2.46745 2.63629 2.82871 3.30296 3.34190 3.45177 3.45288 3.49341 3.58532 3.65308 3.68264 3.69286 3.72396 3.79009 3.87904 3.90774 3.93724 3.94387 4.08406 4.11803 4.18273 4.29150 4.42248 4.45494 4.54427 4.55103 4.64828 4.69255 4.71158 4.75339 4.80318 4.84228 4.86427 4.91713 4.92142 4.95640 5.01502 5.08781 5.12454 5.14353 5.24506 5.25463 5.28437 5.47390 5.57288 5.68626 5.73323 5.88444 6.25758 6.43664 6.50556 7.10752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.077 4.077 3 Si 0.763 3.237 4 C -0.157 4.157 5 C -0.057 4.057 6 C -0.162 4.162 7 C 0.125 3.875 8 O -0.322 6.322 9 C 0.135 3.865 10 C 0.041 3.959 11 C -0.223 4.223 12 C 0.588 3.412 13 O -0.566 6.566 14 N -0.693 5.693 15 C 0.116 3.884 16 H 0.095 0.905 17 C -0.136 4.136 18 C -0.071 4.071 19 H 0.102 0.898 20 C -0.111 4.111 21 C 0.116 3.884 22 F -0.137 7.137 23 C -0.199 4.199 24 C 0.107 3.893 25 F -0.143 7.143 26 C -0.155 4.155 27 C -0.055 4.055 28 C -0.123 4.123 29 C -0.197 4.197 30 C -0.013 4.013 31 O -0.178 6.178 32 C -0.205 4.205 33 C -0.077 4.077 34 H 0.385 0.615 35 H 0.124 0.876 36 H -0.302 1.302 37 H -0.281 1.281 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.413 0.587 43 H 0.112 0.888 44 H 0.068 0.932 45 H 0.150 0.850 46 H 0.162 0.838 47 H 0.172 0.828 48 H 0.084 0.916 49 H 0.114 0.886 50 H 0.190 0.810 51 H 0.251 0.749 52 H 0.148 0.852 53 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.708 -0.535 2.990 4.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.186 4.186 3 Si 0.669 3.331 4 C -0.158 4.158 5 C -0.075 4.075 6 C -0.181 4.181 7 C 0.080 3.920 8 O -0.237 6.237 9 C 0.061 3.939 10 C -0.012 4.012 11 C -0.228 4.228 12 C 0.376 3.624 13 O -0.446 6.446 14 N -0.344 5.344 15 C 0.011 3.989 16 H 0.113 0.887 17 C -0.174 4.174 18 C -0.090 4.090 19 H 0.120 0.880 20 C -0.112 4.112 21 C 0.096 3.904 22 F -0.116 7.116 23 C -0.218 4.218 24 C 0.087 3.913 25 F -0.121 7.121 26 C -0.173 4.173 27 C -0.073 4.073 28 C -0.161 4.161 29 C -0.216 4.216 30 C -0.078 4.078 31 O -0.074 6.074 32 C -0.224 4.224 33 C -0.095 4.095 34 H 0.234 0.766 35 H 0.142 0.858 36 H -0.231 1.231 37 H -0.207 1.207 38 H 0.158 0.842 39 H 0.151 0.849 40 H 0.116 0.884 41 H 0.129 0.871 42 H 0.250 0.750 43 H 0.130 0.870 44 H 0.087 0.913 45 H 0.168 0.832 46 H 0.180 0.820 47 H 0.190 0.810 48 H 0.102 0.898 49 H 0.132 0.868 50 H 0.207 0.793 51 H 0.266 0.734 52 H 0.165 0.835 53 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.272 0.304 1.887 2.970 hybrid contribution -0.493 -0.673 1.568 1.776 sum 1.780 -0.368 3.456 3.904 Atomic orbital electron populations 1.86567 1.18642 1.80388 1.50129 1.25155 0.83302 1.11705 0.98458 0.94064 0.90445 0.72175 0.76412 1.20263 1.02581 0.94950 0.97983 1.20956 0.96565 0.93899 0.96073 1.20629 1.02208 1.01102 0.94157 1.19176 0.94435 0.91708 0.86658 1.86051 1.69002 1.38940 1.29676 1.21155 0.98257 0.90660 0.83853 1.22073 0.90781 1.00290 0.88100 1.21381 0.97283 1.05399 0.98703 1.17362 0.81466 0.78729 0.84842 1.90776 1.80462 1.45641 1.27759 1.45365 1.17534 1.48755 1.22717 1.21894 0.86108 0.97856 0.93071 0.88675 1.23629 0.96322 0.96093 1.01395 1.21583 0.88733 0.97928 1.00724 0.87962 1.19967 0.96725 1.01239 0.93277 1.17308 0.90330 1.00487 0.82229 1.91500 1.83585 1.91092 1.45419 1.21162 0.94629 1.06843 0.99204 1.17576 0.77928 1.00822 0.94930 1.91527 1.31982 1.92598 1.96020 1.21522 0.94947 1.01287 0.99563 1.21077 0.93331 0.96090 0.96775 1.23420 0.95871 0.96256 1.00558 1.23244 1.00667 1.04529 0.93178 1.24889 0.92734 0.92994 0.97229 1.83795 1.44633 1.53748 1.25223 1.21405 1.06296 0.93307 1.01354 1.21045 0.95722 1.00258 0.92459 0.76552 0.85807 1.23060 1.20712 0.84227 0.84905 0.88365 0.87136 0.74953 0.87018 0.91323 0.83219 0.82017 0.81030 0.89759 0.86778 0.79259 0.73356 0.83486 0.83480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.99 12.83 -148.98 -1.91 -3.91 16 2 C -0.08 -0.05 2.80 71.24 0.20 0.15 16 3 Si 0.76 -0.83 29.88 68.60 2.05 1.22 16 4 C -0.16 -0.33 5.35 -19.85 -0.11 -0.44 16 5 C -0.06 -0.21 9.68 22.25 0.22 0.00 16 6 C -0.16 -0.95 9.99 22.37 0.22 -0.73 16 7 C 0.13 0.84 6.69 22.51 0.15 0.99 16 8 O -0.32 -2.74 10.12 -92.40 -0.94 -3.67 16 9 C 0.13 0.55 4.74 71.24 0.34 0.89 16 10 C 0.04 0.18 7.00 25.26 0.18 0.36 16 11 C -0.22 -0.62 6.31 -18.99 -0.12 -0.74 16 12 C 0.59 2.59 7.81 86.65 0.68 3.26 16 13 O -0.57 -6.14 14.46 -4.08 -0.06 -6.20 16 14 N -0.69 1.63 5.26 -443.35 -2.33 -0.70 16 15 C 0.12 -0.44 4.30 45.52 0.20 -0.24 16 16 H 0.10 -0.03 7.50 -2.39 -0.02 -0.04 16 17 C -0.14 0.76 7.27 31.22 0.23 0.99 16 18 C -0.07 0.42 3.79 -10.92 -0.04 0.38 16 19 H 0.10 -0.56 7.44 -2.39 -0.02 -0.58 16 20 C -0.11 0.39 5.30 -19.82 -0.10 0.29 16 21 C 0.12 0.04 7.24 22.37 0.16 0.20 16 22 F -0.14 -0.30 16.36 44.97 0.74 0.43 16 23 C -0.20 -0.18 10.01 22.35 0.22 0.05 16 24 C 0.11 0.09 7.30 22.37 0.16 0.25 16 25 F -0.14 -0.57 17.27 44.97 0.78 0.20 16 26 C -0.15 0.58 10.02 22.32 0.22 0.80 16 27 C -0.06 0.34 8.59 22.26 0.19 0.53 16 28 C -0.12 0.91 7.28 31.12 0.23 1.13 16 29 C -0.20 0.80 10.60 23.64 0.25 1.05 16 30 C -0.01 0.06 12.03 66.89 0.80 0.86 16 31 O -0.18 -0.41 10.52 4.45 0.05 -0.36 16 32 C -0.21 -0.61 9.04 22.36 0.20 -0.41 16 33 C -0.08 -0.09 8.66 22.25 0.19 0.11 16 34 H 0.39 -0.72 8.70 -74.06 -0.64 -1.36 16 35 H 0.12 -0.12 7.96 -2.39 -0.02 -0.14 16 36 H -0.30 -1.97 7.11 99.48 0.71 -1.26 16 37 H -0.28 -0.60 7.01 99.48 0.70 0.10 16 38 H 0.14 0.22 8.06 -2.91 -0.02 0.20 16 39 H 0.13 0.62 8.06 -2.91 -0.02 0.60 16 40 H 0.10 -0.04 7.65 -2.39 -0.02 -0.05 16 41 H 0.11 0.51 6.02 -2.39 -0.01 0.50 16 42 H 0.41 -3.00 7.88 -92.71 -0.73 -3.73 16 43 H 0.11 -0.93 6.35 -2.39 -0.02 -0.94 16 44 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 45 H 0.15 -0.07 8.06 -2.91 -0.02 -0.09 16 46 H 0.16 -1.23 8.06 -2.91 -0.02 -1.25 16 47 H 0.17 -2.00 6.69 -2.91 -0.02 -2.02 16 48 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 49 H 0.11 -1.07 7.71 -2.39 -0.02 -1.09 16 50 H 0.19 -2.06 7.74 -2.91 -0.02 -2.08 16 51 H 0.25 -3.33 8.06 -2.91 -0.02 -3.35 16 52 H 0.15 -0.15 6.30 -2.91 -0.02 -0.17 16 53 H 0.15 -0.47 4.83 -2.91 -0.01 -0.48 16 Total: 0.00 -24.11 451.97 2.72 -21.39 By element: Atomic # 1 Polarization: -17.82 SS G_CDS: -0.32 Total: -18.14 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 4.67 Total: 9.74 kcal Atomic # 7 Polarization: 1.63 SS G_CDS: -2.33 Total: -0.70 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -2.86 Total: -14.14 kcal Atomic # 9 Polarization: -0.88 SS G_CDS: 1.51 Total: 0.64 kcal Atomic # 14 Polarization: -0.83 SS G_CDS: 2.05 Total: 1.22 kcal Total: -24.11 2.72 -21.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_4549634.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.340 kcal (2) G-P(sol) polarization free energy of solvation -24.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds