Wall clock time and date at job start Sun Mar 7 2021 00:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35996 * 116.99757 * 2 1 4 4 C 1.39156 * 120.07192 * 179.97438 * 3 2 1 5 5 O 1.35997 * 120.06847 * 359.96084 * 4 3 2 6 6 C 1.42908 * 116.99676 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.46887 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99538 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 6 11 11 H 1.08998 * 112.85361 * 336.47110 * 10 9 7 12 12 C 1.53778 * 113.61557 * 107.77998 * 10 9 7 13 13 C 1.53780 * 87.08092 * 89.11527 * 12 10 9 14 14 H 1.09000 * 113.61877 * 270.88531 * 13 12 10 15 15 C 1.50703 * 113.69309 * 139.99206 * 13 12 10 16 16 C 1.38447 * 119.98835 * 142.18862 * 15 13 12 17 17 F 1.35099 * 120.01358 * 0.02881 * 16 15 13 18 18 C 1.38445 * 119.97680 * 179.77250 * 16 15 13 19 19 C 1.38403 * 119.94224 * 0.48200 * 18 16 15 20 20 F 1.35103 * 120.00651 * 179.79094 * 19 18 16 21 21 C 1.38489 * 119.97821 * 359.77136 * 19 18 16 22 22 C 1.38179 * 120.02763 * 0.02562 * 21 19 18 23 23 C 1.53783 * 87.08328 * 25.43430 * 13 12 10 24 24 C 1.38558 * 119.85391 * 180.23293 * 4 3 2 25 25 C 1.38240 * 120.00011 * 359.49198 * 24 4 3 26 26 N 1.48008 * 119.92691 * 180.25351 * 25 24 4 27 27 O 1.21803 * 120.00200 * 0.25916 * 26 25 24 28 28 O 1.21801 * 120.00018 * 180.26259 * 26 25 24 29 29 C 1.38250 * 120.14858 * 0.51601 * 25 24 4 30 30 C 1.50700 * 119.93006 * 179.76337 * 29 25 24 31 31 O 1.42895 * 109.46986 * 74.97465 * 30 29 25 32 32 Si 1.86304 * 109.46959 * 194.97477 * 30 29 25 33 33 C 1.38250 * 120.14210 * 359.73842 * 29 25 24 34 34 H 1.09007 * 109.46848 * 299.99754 * 1 2 3 35 35 H 1.08994 * 109.47221 * 59.99426 * 1 2 3 36 36 H 1.09002 * 109.47005 * 180.02562 * 1 2 3 37 37 H 1.09003 * 109.46467 * 60.00362 * 6 5 4 38 38 H 1.08993 * 109.47113 * 300.00627 * 6 5 4 39 39 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 40 40 H 1.08998 * 113.61596 * 203.65958 * 12 10 9 41 41 H 1.08998 * 113.61243 * 334.56847 * 12 10 9 42 42 H 1.07993 * 120.02938 * 180.25852 * 18 16 15 43 43 H 1.07999 * 119.98478 * 180.02562 * 21 19 18 44 44 H 1.07995 * 119.97852 * 180.02562 * 22 21 19 45 45 H 1.09000 * 113.61551 * 220.02042 * 23 13 12 46 46 H 1.09004 * 113.61245 * 89.11513 * 23 13 12 47 47 H 1.08005 * 120.00053 * 179.73053 * 24 4 3 48 48 H 1.08999 * 109.46520 * 314.97154 * 30 29 25 49 49 H 0.96697 * 113.99729 * 179.97438 * 31 30 29 50 50 H 1.48501 * 109.99812 * 178.67746 * 32 30 29 51 51 H 1.48496 * 110.00262 * 299.99993 * 32 30 29 52 52 H 1.07996 * 119.99601 * 179.97438 * 33 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4360 1.2864 0.0005 5 8 4.1795 0.1477 0.0019 6 6 5.6004 0.3007 0.0018 7 6 6.2519 -1.0582 0.0040 8 8 5.5670 -2.0592 0.0050 9 7 7.5957 -1.1611 0.0048 10 6 8.2291 -2.4821 0.0130 11 1 7.5816 -3.2595 0.4187 12 6 8.8836 -2.8598 -1.3263 13 6 10.1619 -2.1847 -0.8020 14 1 10.2192 -1.1206 -1.0309 15 6 11.4259 -2.9272 -1.1516 16 6 12.5707 -2.2248 -1.4874 17 9 12.5551 -0.8740 -1.5012 18 6 13.7330 -2.9071 -1.8040 19 6 13.7462 -4.2910 -1.7940 20 9 14.8786 -4.9582 -2.1068 21 6 12.5984 -4.9916 -1.4629 22 6 11.4400 -4.3095 -1.1430 23 6 9.6442 -2.4830 0.6150 24 6 4.0603 2.5234 0.0054 25 6 3.3029 3.6798 -0.0009 26 7 3.9715 5.0003 -0.0013 27 8 5.1877 5.0672 -0.0009 28 8 3.3055 6.0201 -0.0020 29 6 1.9224 3.6058 -0.0013 30 6 1.1016 4.8697 -0.0027 31 8 1.1356 5.4581 -1.3045 32 14 -0.6598 4.4667 0.4509 33 6 1.2932 2.3748 -0.0008 34 1 -0.3633 0.5138 0.8901 35 1 -0.3633 0.5139 -0.8899 36 1 -0.3633 -1.0277 0.0005 37 1 5.9064 0.8514 0.8913 38 1 5.9066 0.8495 -0.8887 39 1 8.1435 -0.3606 0.0044 40 1 8.9867 -3.9348 -1.4741 41 1 8.4434 -2.3537 -2.1854 42 1 14.6277 -2.3600 -2.0620 43 1 12.6087 -6.0715 -1.4547 44 1 10.5455 -4.8566 -0.8846 45 1 9.8181 -1.6727 1.3230 46 1 9.9553 -3.4551 0.9978 47 1 5.1386 2.5840 0.0102 48 1 1.5127 5.5706 0.7238 49 1 0.6269 6.2771 -1.3792 50 1 -1.4726 5.7091 0.4841 51 1 -1.2317 3.5117 -0.5319 52 1 0.2147 2.3197 -0.0007 There are 82 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 82 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_4549636.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:09:07 Heat of formation + Delta-G solvation = -122.875144 kcal Electronic energy + Delta-G solvation = -43896.065005 eV Core-core repulsion = 37662.813357 eV Total energy + Delta-G solvation = -6233.251648 eV No. of doubly occupied orbitals = 82 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 451.141 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -50.07677 -50.04901 -43.40257 -42.13366 -41.57472 -40.53183 -39.64335 -39.15073 -38.59762 -37.76253 -37.24223 -34.72603 -32.78209 -32.59292 -31.92929 -31.57695 -29.76424 -28.79280 -27.92412 -26.72466 -26.23610 -25.69256 -24.34098 -23.92116 -23.15658 -22.87369 -22.01709 -20.76499 -20.29401 -19.86852 -19.46438 -19.34481 -18.91865 -18.68254 -18.36423 -18.22140 -18.03909 -17.76337 -17.72928 -17.15344 -17.05404 -16.86374 -16.85134 -16.58666 -16.44500 -16.37600 -15.94096 -15.69445 -15.65116 -15.51839 -15.29225 -15.19411 -14.80540 -14.70990 -14.24515 -14.12910 -13.97648 -13.87040 -13.74477 -13.57745 -13.49397 -13.43962 -12.93619 -12.85129 -12.68904 -12.57882 -12.56579 -12.41208 -12.37492 -12.32348 -12.18911 -12.05505 -11.91385 -11.73887 -11.32641 -11.09207 -10.48461 -10.41418 -10.20740 -10.09262 -9.60024 -9.49878 -5.01416 -1.33974 -0.44113 -0.13054 -0.03757 0.17638 0.30290 1.13738 1.22721 1.37547 1.52032 1.83338 1.86872 1.90059 2.27702 2.32779 2.82009 2.89958 3.14704 3.29162 3.29689 3.44385 3.45015 3.47684 3.52112 3.61016 3.64043 3.67445 3.85531 3.86636 3.92264 3.93143 3.98301 4.03577 4.08180 4.13047 4.17275 4.18885 4.30523 4.37529 4.59592 4.60646 4.69229 4.70983 4.74602 4.75611 4.82500 4.84547 4.90057 4.91115 5.00953 5.07647 5.10614 5.24441 5.26766 5.50890 5.59486 5.72322 6.03058 6.37487 6.50209 6.51690 7.06537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.305 6.305 3 C 0.168 3.832 4 C 0.103 3.897 5 O -0.289 6.289 6 C 0.025 3.975 7 C 0.521 3.479 8 O -0.562 6.562 9 N -0.695 5.695 10 C 0.117 3.883 11 H 0.095 0.905 12 C -0.139 4.139 13 C -0.073 4.073 14 H 0.105 0.895 15 C -0.111 4.111 16 C 0.116 3.884 17 F -0.137 7.137 18 C -0.199 4.199 19 C 0.106 3.894 20 F -0.143 7.143 21 C -0.155 4.155 22 C -0.056 4.056 23 C -0.122 4.122 24 C -0.109 4.109 25 C -0.045 4.045 26 N 0.038 4.962 27 O -0.191 6.191 28 O -0.157 6.157 29 C 0.003 3.997 30 C -0.106 4.106 31 O -0.547 6.547 32 Si 0.769 3.231 33 C -0.173 4.173 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.126 0.874 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.420 0.580 40 H 0.109 0.891 41 H 0.069 0.931 42 H 0.150 0.850 43 H 0.162 0.838 44 H 0.172 0.828 45 H 0.088 0.912 46 H 0.112 0.888 47 H 0.186 0.814 48 H 0.102 0.898 49 H 0.400 0.600 50 H -0.277 1.277 51 H -0.269 1.269 52 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.532 -2.669 4.117 6.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.217 6.217 3 C 0.120 3.880 4 C 0.055 3.945 5 O -0.202 6.202 6 C -0.053 4.053 7 C 0.307 3.693 8 O -0.440 6.440 9 N -0.349 5.349 10 C 0.011 3.989 11 H 0.113 0.887 12 C -0.178 4.178 13 C -0.091 4.091 14 H 0.123 0.877 15 C -0.112 4.112 16 C 0.097 3.903 17 F -0.116 7.116 18 C -0.219 4.219 19 C 0.087 3.913 20 F -0.121 7.121 21 C -0.174 4.174 22 C -0.073 4.073 23 C -0.160 4.160 24 C -0.129 4.129 25 C -0.130 4.130 26 N 0.552 4.448 27 O -0.400 6.400 28 O -0.374 6.374 29 C 0.001 3.999 30 C -0.213 4.213 31 O -0.357 6.357 32 Si 0.670 3.330 33 C -0.192 4.192 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.143 0.857 39 H 0.258 0.742 40 H 0.128 0.872 41 H 0.088 0.912 42 H 0.167 0.833 43 H 0.179 0.821 44 H 0.189 0.811 45 H 0.107 0.893 46 H 0.131 0.869 47 H 0.203 0.797 48 H 0.119 0.881 49 H 0.252 0.748 50 H -0.203 1.203 51 H -0.195 1.195 52 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.683 -4.882 3.737 7.729 hybrid contribution 1.313 2.306 -1.254 2.935 sum -3.370 -2.576 2.483 4.915 Atomic orbital electron populations 1.23743 0.75031 1.07020 1.03588 1.86319 1.24492 1.24512 1.86345 1.18633 0.89283 0.86179 0.93940 1.17906 0.88595 0.85230 1.02726 1.86300 1.18476 1.26672 1.88722 1.22935 0.78783 0.96234 1.07345 1.20242 0.82966 0.90341 0.75759 1.90783 1.63836 1.39667 1.49681 1.45391 1.05093 1.09916 1.74464 1.21880 0.94192 0.85149 0.97651 0.88718 1.23600 0.94231 1.02538 0.97397 1.21575 0.89827 0.99866 0.97857 0.87671 1.19981 0.94353 0.94697 1.02209 1.17313 0.94355 0.76914 1.01743 1.91504 1.97013 1.28979 1.94060 1.21174 0.99919 0.93756 1.07042 1.17580 0.83329 0.89489 1.00885 1.91525 1.49619 1.80529 1.90476 1.21517 0.91365 1.02556 1.01948 1.21076 0.98546 0.92151 0.95546 1.23426 0.92343 1.04866 0.95324 1.20905 1.03048 0.88048 1.00871 1.20549 0.92569 0.82259 1.17594 1.43566 1.00821 1.03222 0.97184 1.94517 0.96339 1.94063 1.55067 1.94482 1.64613 1.25301 1.52962 1.19115 0.90355 0.95893 0.94489 1.25410 1.11945 0.94070 0.89838 1.86476 1.75712 1.44865 1.28672 0.94361 0.70528 0.80999 0.87089 1.21162 1.02102 0.88630 1.07281 0.89184 0.91202 0.85634 0.85105 0.85675 0.74245 0.87249 0.91233 0.83255 0.82074 0.81052 0.89308 0.86938 0.79670 0.88059 0.74834 1.20330 1.19534 0.80039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.81 113.37 1.11 1.12 16 2 O -0.31 -0.55 10.28 -79.63 -0.82 -1.37 16 3 C 0.17 0.21 6.70 22.57 0.15 0.36 16 4 C 0.10 0.17 6.70 22.57 0.15 0.33 16 5 O -0.29 -1.02 9.46 -67.10 -0.63 -1.66 16 6 C 0.02 -0.11 5.22 71.24 0.37 0.26 16 7 C 0.52 0.18 7.91 87.66 0.69 0.87 16 8 O -0.56 -6.29 16.10 16.00 0.26 -6.04 16 9 N -0.69 4.31 5.26 -440.04 -2.32 1.99 16 10 C 0.12 -0.64 4.33 45.52 0.20 -0.44 16 11 H 0.09 -0.14 7.46 -2.39 -0.02 -0.16 16 12 C -0.14 0.88 7.25 31.12 0.23 1.11 16 13 C -0.07 0.50 3.78 -11.01 -0.04 0.45 16 14 H 0.11 -0.70 7.44 -2.39 -0.02 -0.72 16 15 C -0.11 0.42 5.30 -19.81 -0.10 0.31 16 16 C 0.12 0.04 7.24 22.37 0.16 0.20 16 17 F -0.14 -0.31 16.36 44.97 0.74 0.42 16 18 C -0.20 -0.22 10.01 22.36 0.22 0.00 16 19 C 0.11 0.11 7.30 22.37 0.16 0.28 16 20 F -0.14 -0.62 17.27 44.97 0.78 0.16 16 21 C -0.16 0.56 10.02 22.32 0.22 0.78 16 22 C -0.06 0.34 8.61 22.26 0.19 0.53 16 23 C -0.12 1.07 7.29 31.12 0.23 1.30 16 24 C -0.11 -0.02 8.54 22.35 0.19 0.17 16 25 C -0.05 -0.19 6.85 36.38 0.25 0.06 16 26 N 0.04 0.34 4.45 -46.46 -0.21 0.13 16 27 O -0.19 -1.93 18.44 18.88 0.35 -1.58 16 28 O -0.16 -1.61 14.62 25.10 0.37 -1.24 16 29 C 0.00 0.01 5.29 -19.86 -0.11 -0.10 16 30 C -0.11 0.01 1.73 71.24 0.12 0.13 16 31 O -0.55 -1.63 11.77 -129.63 -1.53 -3.16 16 32 Si 0.77 -4.13 30.19 68.60 2.07 -2.06 16 33 C -0.17 0.26 7.65 22.35 0.17 0.43 16 34 H 0.09 -1.04 7.67 -2.38 -0.02 -1.06 16 35 H 0.07 -0.58 7.66 -2.39 -0.02 -0.60 16 36 H 0.13 -1.18 8.14 -2.39 -0.02 -1.20 16 37 H 0.13 -1.42 7.65 -2.39 -0.02 -1.44 16 38 H 0.13 -1.23 7.68 -2.39 -0.02 -1.25 16 39 H 0.42 -5.19 8.70 -92.71 -0.81 -5.99 16 40 H 0.11 -0.93 6.32 -2.39 -0.02 -0.94 16 41 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 42 H 0.15 -0.02 8.06 -2.91 -0.02 -0.04 16 43 H 0.16 -1.18 8.06 -2.91 -0.02 -1.21 16 44 H 0.17 -2.00 6.66 -2.91 -0.02 -2.02 16 45 H 0.09 -0.86 8.14 -2.39 -0.02 -0.88 16 46 H 0.11 -1.17 7.72 -2.39 -0.02 -1.18 16 47 H 0.19 -0.91 5.85 -2.91 -0.02 -0.93 16 48 H 0.10 -0.01 6.07 -2.39 -0.01 -0.03 16 49 H 0.40 -1.83 8.74 -74.06 -0.65 -2.47 16 50 H -0.28 0.21 7.11 99.48 0.71 0.92 16 51 H -0.27 0.67 6.74 99.48 0.67 1.34 16 52 H 0.18 -1.16 3.13 -2.91 -0.01 -1.17 16 Total: 0.00 -30.84 444.87 3.25 -27.60 By element: Atomic # 1 Polarization: -20.96 SS G_CDS: -0.38 Total: -21.35 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 4.58 Total: 8.15 kcal Atomic # 7 Polarization: 4.65 SS G_CDS: -2.52 Total: 2.13 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -2.01 Total: -15.05 kcal Atomic # 9 Polarization: -0.93 SS G_CDS: 1.51 Total: 0.58 kcal Atomic # 14 Polarization: -4.13 SS G_CDS: 2.07 Total: -2.06 kcal Total: -30.84 3.25 -27.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_4549636.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.278 kcal (2) G-P(sol) polarization free energy of solvation -30.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds