Wall clock time and date at job start Sun Mar 7 2021 00:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86298 * 109.47725 * 2 1 4 4 C 1.50699 * 109.47188 * 120.00199 * 2 1 3 5 5 C 1.38249 * 119.94562 * 244.71916 * 4 2 1 6 6 C 1.38162 * 120.05463 * 179.72316 * 5 4 2 7 7 C 1.38713 * 119.94533 * 0.55415 * 6 5 4 8 8 O 1.35897 * 120.05323 * 179.74678 * 7 6 5 9 9 C 1.42901 * 117.00604 * 359.97438 * 8 7 6 10 10 C 1.50700 * 109.47445 * 180.02562 * 9 8 7 11 11 O 1.21277 * 119.99977 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99725 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99926 * 179.97438 * 12 10 9 14 14 H 1.08999 * 112.84770 * 334.67046 * 13 12 10 15 15 C 1.53779 * 113.61229 * 105.86212 * 13 12 10 16 16 C 1.54051 * 86.98147 * 89.16572 * 15 13 12 17 17 H 1.08997 * 113.68938 * 270.87215 * 16 15 13 18 18 C 1.50707 * 113.61880 * 139.98108 * 16 15 13 19 19 C 1.38453 * 119.98768 * 142.23163 * 18 16 15 20 20 F 1.35098 * 120.01184 * 0.02562 * 19 18 16 21 21 C 1.38445 * 119.97278 * 179.76632 * 19 18 16 22 22 C 1.38400 * 119.94522 * 0.48156 * 21 19 18 23 23 F 1.35102 * 120.00640 * 179.78601 * 22 21 19 24 24 C 1.38495 * 119.97841 * 359.76978 * 22 21 19 25 25 C 1.38189 * 120.02390 * 359.97438 * 24 22 21 26 26 C 1.53777 * 113.61796 * 203.47661 * 13 12 10 27 27 C 1.38750 * 119.88728 * 359.72338 * 7 6 5 28 28 N 1.48006 * 120.02505 * 179.97438 * 27 7 6 29 29 O 1.21799 * 119.99876 * 180.02562 * 28 27 7 30 30 O 1.21795 * 120.00126 * 0.02567 * 28 27 7 31 31 C 1.38116 * 119.94323 * 0.02562 * 27 7 6 32 32 H 0.96709 * 113.99337 * 300.00145 * 1 2 3 33 33 H 1.09006 * 109.47099 * 239.99662 * 2 1 3 34 34 H 1.48506 * 109.99834 * 300.00610 * 3 2 1 35 35 H 1.48502 * 110.00011 * 61.31874 * 3 2 1 36 36 H 1.08000 * 119.96862 * 359.97438 * 5 4 2 37 37 H 1.08006 * 120.02748 * 180.25557 * 6 5 4 38 38 H 1.09005 * 109.46775 * 299.99940 * 9 8 7 39 39 H 1.08997 * 109.47103 * 59.99569 * 9 8 7 40 40 H 0.97001 * 120.00291 * 359.97438 * 12 10 9 41 41 H 1.09000 * 113.61386 * 203.66377 * 15 13 12 42 42 H 1.08996 * 113.61348 * 334.57444 * 15 13 12 43 43 H 1.07995 * 120.02222 * 180.25186 * 21 19 18 44 44 H 1.07995 * 119.98591 * 179.97438 * 24 22 21 45 45 H 1.07995 * 119.97015 * 179.97438 * 25 24 22 46 46 H 1.08999 * 113.61144 * 25.42819 * 26 13 12 47 47 H 1.08997 * 113.61867 * 156.33752 * 26 13 12 48 48 H 1.08012 * 119.97252 * 179.97438 * 31 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6437 -0.0125 2.1878 6 6 3.1003 -0.6603 3.3195 7 6 2.8535 -2.0147 3.4891 8 8 3.3061 -2.6552 4.5989 9 6 4.0299 -1.8721 5.5503 10 6 4.4493 -2.7453 6.7047 11 8 4.1568 -3.9222 6.7123 12 7 5.1494 -2.2182 7.7286 13 6 5.5566 -3.0670 8.8512 14 1 4.9083 -3.9331 8.9839 15 6 7.0549 -3.4135 8.8495 16 6 7.2695 -2.1296 9.6732 17 1 7.4351 -1.2410 9.0641 18 6 8.2868 -2.2818 10.7747 19 6 9.1498 -1.2398 11.0685 20 9 9.0798 -0.0866 10.3683 21 6 10.0810 -1.3782 12.0836 22 6 10.1545 -2.5620 12.7969 23 9 11.0656 -2.6999 13.7849 24 6 9.2936 -3.6048 12.4978 25 6 8.3611 -3.4636 11.4879 26 6 5.8162 -2.2870 10.1508 27 6 2.1433 -2.7142 2.5240 28 7 1.8786 -4.1595 2.7017 29 8 1.2555 -4.7732 1.8540 30 8 2.2839 -4.7352 3.6955 31 6 1.6844 -2.0609 1.3970 32 1 -0.3932 0.4418 0.7651 33 1 1.7923 -0.5139 -0.8900 34 1 1.5615 2.4679 -1.2085 35 1 1.5881 2.4585 1.2242 36 1 2.8398 1.0410 2.0529 37 1 3.6533 -0.1136 4.0691 38 1 4.9149 -1.4493 5.0747 39 1 3.3940 -1.0660 5.9162 40 1 5.3836 -1.2770 7.7224 41 1 7.2924 -4.3269 9.3949 42 1 7.5096 -3.3800 7.8595 43 1 10.7519 -0.5645 12.3161 44 1 9.3512 -4.5287 13.0541 45 1 7.6905 -4.2774 11.2551 46 1 5.2717 -1.3446 10.2105 47 1 5.7157 -2.8929 11.0512 48 1 1.1318 -2.6050 0.6452 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_4549638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:09:13 Heat of formation + Delta-G solvation = -97.494100 kcal Electronic energy + Delta-G solvation = -38860.007278 eV Core-core repulsion = 33102.076045 eV Total energy + Delta-G solvation = -5757.931233 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.126 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -50.05919 -50.03680 -43.28591 -41.85542 -41.37638 -40.33406 -39.46894 -38.58256 -37.61563 -37.45213 -34.69272 -33.46630 -32.29144 -31.92016 -31.57578 -29.72805 -27.80709 -26.71106 -26.66472 -26.03879 -24.39496 -24.03823 -22.99899 -22.75125 -21.93976 -20.55796 -20.27187 -19.77008 -19.34086 -19.14520 -18.63037 -18.55311 -18.27288 -18.13160 -17.59432 -17.42920 -17.03631 -16.94024 -16.85574 -16.60812 -16.36744 -16.35078 -16.11287 -15.74130 -15.69434 -15.51621 -15.36873 -15.18949 -14.84861 -14.71250 -14.08807 -14.02254 -13.84884 -13.73345 -13.65418 -13.55359 -13.41979 -13.22005 -12.83624 -12.69609 -12.55326 -12.38971 -12.34346 -12.26369 -12.20875 -12.03869 -11.78460 -11.72023 -11.30231 -11.02566 -10.84283 -10.72595 -10.16976 -10.07564 -9.80582 -9.58664 -4.90937 -1.30434 -0.23767 -0.11896 -0.02558 0.16555 0.36155 1.20488 1.27026 1.45338 1.59399 2.01532 2.05567 2.28694 2.31888 2.83041 3.11778 3.24905 3.31020 3.35900 3.45892 3.46195 3.50153 3.60143 3.66939 3.69626 3.71848 3.76678 3.87719 3.93666 3.94207 4.03993 4.09782 4.19063 4.29095 4.39364 4.55926 4.62098 4.64633 4.70895 4.76173 4.84140 4.84660 4.85932 4.91829 4.92477 5.02569 5.08311 5.09038 5.12688 5.19953 5.27326 5.56914 5.73454 5.76816 6.42763 6.44905 6.45785 7.16045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.091 4.091 3 Si 0.788 3.212 4 C -0.147 4.147 5 C -0.006 4.006 6 C -0.189 4.189 7 C 0.195 3.805 8 O -0.291 6.291 9 C 0.023 3.977 10 C 0.511 3.489 11 O -0.562 6.562 12 N -0.693 5.693 13 C 0.116 3.884 14 H 0.087 0.913 15 C -0.141 4.141 16 C -0.069 4.069 17 H 0.111 0.889 18 C -0.112 4.112 19 C 0.119 3.881 20 F -0.135 7.135 21 C -0.199 4.199 22 C 0.106 3.894 23 F -0.143 7.143 24 C -0.157 4.157 25 C -0.057 4.057 26 C -0.121 4.121 27 C -0.105 4.105 28 N 0.034 4.966 29 O -0.205 6.205 30 O -0.171 6.171 31 C -0.003 4.003 32 H 0.389 0.611 33 H 0.126 0.874 34 H -0.309 1.309 35 H -0.258 1.258 36 H 0.187 0.813 37 H 0.206 0.794 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.422 0.578 41 H 0.104 0.896 42 H 0.070 0.930 43 H 0.151 0.849 44 H 0.159 0.841 45 H 0.169 0.831 46 H 0.092 0.908 47 H 0.108 0.892 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.548 11.993 2.056 12.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.198 4.198 3 Si 0.691 3.309 4 C -0.149 4.149 5 C -0.024 4.024 6 C -0.207 4.207 7 C 0.145 3.855 8 O -0.201 6.201 9 C -0.053 4.053 10 C 0.297 3.703 11 O -0.439 6.439 12 N -0.347 5.347 13 C 0.010 3.990 14 H 0.105 0.895 15 C -0.179 4.179 16 C -0.087 4.087 17 H 0.129 0.871 18 C -0.113 4.113 19 C 0.100 3.900 20 F -0.113 7.113 21 C -0.218 4.218 22 C 0.087 3.913 23 F -0.122 7.122 24 C -0.176 4.176 25 C -0.075 4.075 26 C -0.159 4.159 27 C -0.190 4.190 28 N 0.544 4.456 29 O -0.412 6.412 30 O -0.386 6.386 31 C -0.022 4.022 32 H 0.239 0.761 33 H 0.144 0.856 34 H -0.238 1.238 35 H -0.184 1.184 36 H 0.204 0.796 37 H 0.223 0.777 38 H 0.163 0.837 39 H 0.161 0.839 40 H 0.260 0.740 41 H 0.123 0.877 42 H 0.089 0.911 43 H 0.169 0.831 44 H 0.177 0.823 45 H 0.186 0.814 46 H 0.110 0.890 47 H 0.126 0.874 48 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.332 12.128 1.508 12.966 hybrid contribution -0.833 -0.515 0.554 1.126 sum 3.499 11.612 2.062 12.302 Atomic orbital electron populations 1.86641 1.18467 1.80477 1.50318 1.25501 0.83616 1.13103 0.97559 0.94122 0.89303 0.70000 0.77498 1.20356 1.02774 0.92067 0.99662 1.21753 0.89019 1.01836 0.89765 1.21804 1.06430 0.89909 1.02576 1.18955 0.89586 0.92148 0.84822 1.86466 1.67412 1.37940 1.28301 1.23133 1.00204 0.93782 0.88218 1.20470 0.77879 0.88044 0.83892 1.90853 1.55404 1.18761 1.78922 1.45325 1.55618 1.14094 1.19670 1.21840 0.95969 0.94743 0.86411 0.89481 1.23641 0.95479 0.97938 1.00855 1.21619 0.92748 1.00088 0.94271 0.87100 1.19984 0.97980 0.93347 0.99944 1.17260 0.97250 0.82957 0.92570 1.91502 1.95574 1.47055 1.77193 1.21176 1.02678 0.99449 0.98513 1.17583 0.90236 0.95190 0.88312 1.91524 1.65053 1.96200 1.59411 1.21509 0.96198 0.99460 1.00387 1.21066 0.96939 0.96991 0.92483 1.23399 0.93805 1.01939 0.96737 1.20862 1.15891 0.79756 1.02479 1.43895 0.97923 1.04263 0.99474 1.94506 1.40394 1.67961 1.38311 1.94674 1.53660 1.70871 1.19387 1.20861 0.93150 0.95118 0.93059 0.76136 0.85644 1.23800 1.18361 0.79590 0.77713 0.83688 0.83899 0.73997 0.87746 0.91096 0.83126 0.82309 0.81361 0.88982 0.87362 0.83201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.02 12.83 -148.98 -1.91 -0.89 16 2 C -0.09 0.61 2.80 71.24 0.20 0.81 16 3 Si 0.79 -8.23 29.87 68.60 2.05 -6.18 16 4 C -0.15 0.94 5.35 -19.85 -0.11 0.83 16 5 C -0.01 0.08 8.66 22.25 0.19 0.27 16 6 C -0.19 2.22 9.04 22.37 0.20 2.42 16 7 C 0.19 -0.10 6.67 22.51 0.15 0.05 16 8 O -0.29 -0.91 7.68 -63.37 -0.49 -1.40 16 9 C 0.02 -0.21 5.22 71.24 0.37 0.16 16 10 C 0.51 -0.52 7.91 87.66 0.69 0.17 16 11 O -0.56 -7.14 16.12 16.02 0.26 -6.88 16 12 N -0.69 5.84 5.26 -440.05 -2.32 3.52 16 13 C 0.12 -0.70 4.29 45.51 0.20 -0.51 16 14 H 0.09 -0.06 7.50 -2.39 -0.02 -0.08 16 15 C -0.14 0.97 7.27 31.21 0.23 1.20 16 16 C -0.07 0.58 3.79 -10.92 -0.04 0.54 16 17 H 0.11 -1.06 7.44 -2.39 -0.02 -1.08 16 18 C -0.11 0.55 5.30 -19.81 -0.10 0.45 16 19 C 0.12 -0.16 7.25 22.37 0.16 0.00 16 20 F -0.13 0.04 16.36 44.97 0.74 0.77 16 21 C -0.20 0.04 10.01 22.36 0.22 0.27 16 22 C 0.11 0.04 7.30 22.37 0.16 0.20 16 23 F -0.14 -0.54 17.27 44.97 0.78 0.24 16 24 C -0.16 0.60 10.03 22.32 0.22 0.83 16 25 C -0.06 0.37 8.61 22.26 0.19 0.56 16 26 C -0.12 1.20 7.29 31.12 0.23 1.43 16 27 C -0.10 -0.65 6.86 36.47 0.25 -0.39 16 28 N 0.03 0.55 4.45 -46.25 -0.21 0.35 16 29 O -0.20 -3.72 18.45 18.89 0.35 -3.37 16 30 O -0.17 -3.56 17.24 25.61 0.44 -3.12 16 31 C 0.00 0.00 9.19 22.25 0.20 0.20 16 32 H 0.39 -3.27 8.70 -74.05 -0.64 -3.91 16 33 H 0.13 -0.89 7.96 -2.38 -0.02 -0.91 16 34 H -0.31 0.08 7.11 99.48 0.71 0.79 16 35 H -0.26 2.53 7.01 99.48 0.70 3.23 16 36 H 0.19 -3.64 4.84 -2.91 -0.01 -3.66 16 37 H 0.21 -4.47 6.30 -2.91 -0.02 -4.49 16 38 H 0.15 -2.56 7.66 -2.38 -0.02 -2.58 16 39 H 0.14 -2.49 7.66 -2.39 -0.02 -2.51 16 40 H 0.42 -6.88 8.70 -92.71 -0.81 -7.69 16 41 H 0.10 -0.84 6.32 -2.39 -0.02 -0.85 16 42 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 43 H 0.15 -0.25 8.06 -2.91 -0.02 -0.28 16 44 H 0.16 -1.14 8.06 -2.91 -0.02 -1.16 16 45 H 0.17 -1.91 6.66 -2.91 -0.02 -1.93 16 46 H 0.09 -1.08 8.14 -2.39 -0.02 -1.10 16 47 H 0.11 -1.15 7.72 -2.39 -0.02 -1.17 16 48 H 0.15 0.46 7.61 -2.90 -0.02 0.44 16 Total: 0.00 -39.74 419.96 2.98 -36.76 By element: Atomic # 1 Polarization: -28.96 SS G_CDS: -0.33 Total: -29.29 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 3.63 Total: 9.49 kcal Atomic # 7 Polarization: 6.39 SS G_CDS: -2.52 Total: 3.86 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -1.35 Total: -15.65 kcal Atomic # 9 Polarization: -0.50 SS G_CDS: 1.51 Total: 1.02 kcal Atomic # 14 Polarization: -8.23 SS G_CDS: 2.05 Total: -6.18 kcal Total: -39.74 2.98 -36.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_4549638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.732 kcal (2) G-P(sol) polarization free energy of solvation -39.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds