Wall clock time and date at job start Sun Mar 7 2021 00:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35982 * 117.00071 * 2 1 4 4 C 1.38675 * 119.99930 * 180.02562 * 3 2 1 5 5 C 1.38150 * 120.00030 * 180.02562 * 4 3 2 6 6 C 1.50706 * 120.00291 * 180.02562 * 5 4 3 7 7 O 1.42897 * 109.46933 * 254.95374 * 6 5 4 8 8 Si 1.86299 * 109.46843 * 14.95056 * 6 5 4 9 9 C 1.38673 * 120.00115 * 359.94943 * 5 4 3 10 10 O 1.35986 * 120.00396 * 180.29943 * 9 5 4 11 11 C 1.42902 * 117.00267 * 179.72725 * 10 9 5 12 12 C 1.50698 * 109.46917 * 180.02562 * 11 10 9 13 13 O 1.21283 * 120.00151 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99795 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00131 * 180.02562 * 14 12 11 16 16 H 1.09000 * 112.85190 * 336.19210 * 15 14 12 17 17 C 1.53775 * 113.61602 * 107.50269 * 15 14 12 18 18 C 1.53778 * 87.08432 * 89.11659 * 17 15 14 19 19 H 1.08998 * 113.61691 * 270.88632 * 18 17 15 20 20 C 1.50697 * 113.69123 * 139.99048 * 18 17 15 21 21 C 1.38460 * 119.98781 * 142.46656 * 20 18 17 22 22 F 1.35106 * 120.00975 * 359.95446 * 21 20 18 23 23 C 1.38436 * 119.97507 * 179.97438 * 21 20 18 24 24 C 1.38394 * 119.95394 * 359.97438 * 23 21 20 25 25 F 1.35092 * 120.01703 * 179.97438 * 24 23 21 26 26 C 1.38496 * 119.97075 * 0.02562 * 24 23 21 27 27 C 1.38186 * 120.02494 * 359.74408 * 26 24 23 28 28 C 1.53778 * 87.08194 * 25.43366 * 18 17 15 29 29 C 1.38725 * 119.99866 * 0.03161 * 9 5 4 30 30 C 1.38104 * 120.00105 * 359.97438 * 29 9 5 31 31 H 1.09011 * 109.46913 * 59.99860 * 1 2 3 32 32 H 1.08997 * 109.47498 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47100 * 300.00148 * 1 2 3 34 34 H 1.08006 * 119.99997 * 0.02898 * 4 3 2 35 35 H 1.09001 * 109.47405 * 134.95091 * 6 5 4 36 36 H 0.96701 * 114.00393 * 59.99673 * 7 6 5 37 37 H 1.48503 * 110.00119 * 58.68103 * 8 6 5 38 38 H 1.48502 * 110.00096 * 180.02562 * 8 6 5 39 39 H 1.08997 * 109.46809 * 300.00275 * 11 10 9 40 40 H 1.08997 * 109.46973 * 60.00370 * 11 10 9 41 41 H 0.97005 * 120.00324 * 359.97438 * 14 12 11 42 42 H 1.09003 * 113.61629 * 203.66813 * 17 15 14 43 43 H 1.09000 * 113.61273 * 334.56736 * 17 15 14 44 44 H 1.08005 * 120.02329 * 179.97438 * 23 21 20 45 45 H 1.08005 * 119.98800 * 179.97438 * 26 24 23 46 46 H 1.08009 * 119.97333 * 180.25459 * 27 26 24 47 47 H 1.09000 * 113.61628 * 220.02318 * 28 18 17 48 48 H 1.08997 * 113.61824 * 89.11422 * 28 18 17 49 49 H 1.08000 * 119.99609 * 180.02562 * 29 9 5 50 50 H 1.07991 * 120.00428 * 179.97438 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4312 1.2841 -0.0005 5 6 4.0584 2.5150 0.0000 6 6 5.5634 2.5940 -0.0012 7 8 6.0218 2.9670 1.2998 8 14 6.2720 0.9322 -0.4563 9 6 3.3032 3.6781 0.0000 10 8 3.9205 4.8897 -0.0056 11 6 3.0806 6.0458 -0.0113 12 6 3.9349 7.2873 -0.0177 13 8 5.1439 7.1915 -0.0169 14 7 3.3553 8.5040 -0.0232 15 6 4.1856 9.7109 -0.0299 16 1 5.1830 9.5408 0.3755 17 6 4.1845 10.4520 -1.3773 18 6 2.9638 11.2304 -0.8589 19 1 2.0119 10.7478 -1.0805 20 6 2.9779 12.6922 -1.2245 21 6 1.7972 13.3333 -1.5593 22 9 0.6328 12.6482 -1.5591 23 6 1.8104 14.6764 -1.8946 24 6 3.0040 15.3770 -1.8943 25 9 3.0184 16.6875 -2.2217 26 6 4.1838 14.7337 -1.5591 27 6 4.1687 13.3941 -1.2200 28 6 3.4833 10.9453 0.5601 29 6 1.9179 3.6055 0.0002 30 6 1.2908 2.3750 -0.0003 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 4.0194 0.3783 -0.0014 35 1 5.8877 3.3386 -0.7281 36 1 5.7690 2.3481 1.9985 37 1 5.7773 0.5182 -1.7939 38 1 7.7556 0.9964 -0.4604 39 1 2.4516 6.0335 -0.9013 40 1 2.4512 6.0420 0.8786 41 1 2.3883 8.5807 -0.0234 42 1 5.0652 11.0748 -1.5339 43 1 3.9628 9.8089 -2.2291 44 1 0.8900 15.1772 -2.1562 45 1 5.1154 15.2800 -1.5592 46 1 5.0887 12.8943 -0.9547 47 1 2.6955 10.7004 1.2725 48 1 4.1723 11.7029 0.9333 49 1 1.3297 4.5113 -0.0003 50 1 0.2124 2.3185 0.0003 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_4974302.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:09:33 Heat of formation + Delta-G solvation = -136.089023 kcal Electronic energy + Delta-G solvation = -36988.469996 eV Core-core repulsion = 31585.661786 eV Total energy + Delta-G solvation = -5402.808210 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.147 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -50.08880 -50.06287 -41.86453 -41.47115 -40.47182 -39.75731 -38.74584 -38.11086 -36.88911 -34.72346 -32.80404 -31.97889 -31.65883 -30.91808 -29.33400 -27.94129 -26.75185 -26.61704 -26.13032 -24.36349 -23.75551 -22.87387 -22.42545 -21.88814 -20.33146 -19.61120 -19.35872 -18.75234 -18.54386 -18.20132 -17.78242 -17.47780 -17.38722 -17.06428 -17.02038 -16.89119 -16.63593 -16.58488 -16.38836 -16.11919 -15.86097 -15.72436 -15.53739 -15.50547 -15.21603 -15.19121 -14.86100 -14.59346 -14.30029 -14.08143 -14.03423 -13.79613 -13.58402 -13.53190 -13.47684 -13.42061 -12.99495 -12.87225 -12.58192 -12.49402 -12.33405 -12.08943 -12.08232 -11.81217 -11.76028 -11.41375 -11.34957 -11.03571 -10.40204 -10.21329 -10.11074 -10.10305 -9.61632 -8.78940 -5.03819 -0.14696 -0.05217 0.07449 0.36625 1.27105 1.40461 1.46697 1.62284 1.93474 2.26057 2.35982 2.56418 2.59489 2.80370 3.27591 3.42693 3.44971 3.48570 3.52284 3.62171 3.65400 3.73093 3.77201 3.84415 3.91107 3.94071 4.05830 4.07141 4.11157 4.14181 4.15534 4.26669 4.40993 4.45541 4.47029 4.57508 4.67077 4.69910 4.71999 4.80288 4.80697 4.82619 4.88359 4.89389 4.98095 4.98881 5.05674 5.08509 5.15911 5.22965 5.23577 5.43706 5.53159 5.70689 6.18199 6.40044 6.48092 6.80992 7.09833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.088 3.912 4 C -0.116 4.116 5 C -0.124 4.124 6 C -0.066 4.066 7 O -0.552 6.552 8 Si 0.781 3.219 9 C 0.097 3.903 10 O -0.311 6.311 11 C 0.035 3.965 12 C 0.516 3.484 13 O -0.567 6.567 14 N -0.695 5.695 15 C 0.115 3.885 16 H 0.089 0.911 17 C -0.140 4.140 18 C -0.070 4.070 19 H 0.107 0.893 20 C -0.112 4.112 21 C 0.118 3.882 22 F -0.136 7.136 23 C -0.198 4.198 24 C 0.107 3.893 25 F -0.142 7.142 26 C -0.156 4.156 27 C -0.057 4.057 28 C -0.121 4.121 29 C -0.165 4.165 30 C -0.159 4.159 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.156 0.844 35 H 0.089 0.911 36 H 0.392 0.608 37 H -0.285 1.285 38 H -0.296 1.296 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.420 0.580 42 H 0.107 0.893 43 H 0.069 0.931 44 H 0.151 0.849 45 H 0.161 0.839 46 H 0.170 0.830 47 H 0.089 0.911 48 H 0.111 0.889 49 H 0.163 0.837 50 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.465 -1.302 2.534 7.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.043 3.957 4 C -0.134 4.134 5 C -0.125 4.125 6 C -0.175 4.175 7 O -0.359 6.359 8 Si 0.686 3.314 9 C 0.052 3.948 10 O -0.224 6.224 11 C -0.043 4.043 12 C 0.302 3.698 13 O -0.445 6.445 14 N -0.349 5.349 15 C 0.009 3.991 16 H 0.107 0.893 17 C -0.178 4.178 18 C -0.088 4.088 19 H 0.125 0.875 20 C -0.113 4.113 21 C 0.098 3.902 22 F -0.115 7.115 23 C -0.218 4.218 24 C 0.088 3.912 25 F -0.121 7.121 26 C -0.174 4.174 27 C -0.074 4.074 28 C -0.159 4.159 29 C -0.184 4.184 30 C -0.178 4.178 31 H 0.083 0.917 32 H 0.133 0.867 33 H 0.086 0.914 34 H 0.173 0.827 35 H 0.107 0.893 36 H 0.241 0.759 37 H -0.212 1.212 38 H -0.224 1.224 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.257 0.743 42 H 0.126 0.874 43 H 0.087 0.913 44 H 0.169 0.831 45 H 0.179 0.821 46 H 0.187 0.813 47 H 0.108 0.892 48 H 0.129 0.871 49 H 0.181 0.819 50 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.653 -1.441 1.639 6.060 hybrid contribution -1.292 1.323 -0.591 1.941 sum -6.945 -0.117 1.048 7.025 Atomic orbital electron populations 1.23344 0.76483 1.05577 1.02303 1.86081 1.23286 1.26277 1.88996 1.18964 0.92054 0.85210 0.99483 1.20177 0.92298 0.96616 1.04260 1.19505 0.96266 0.90751 1.06011 1.25075 0.91897 1.11609 0.88931 1.86548 1.78279 1.54365 1.16706 0.93991 0.76466 0.77782 0.83161 1.18876 0.91568 0.84570 0.99779 1.86205 1.35181 1.11929 1.89102 1.22706 0.92689 0.82316 1.06567 1.20513 0.88322 0.85411 0.75537 1.90780 1.16729 1.87268 1.49718 1.45370 1.11081 1.03742 1.74659 1.21868 0.95711 0.83782 0.97711 0.89267 1.23594 0.98455 0.98461 0.97295 1.21546 1.00127 0.89554 0.97584 0.87468 1.19968 0.91765 0.97266 1.02288 1.17283 0.81801 0.89425 1.01662 1.91504 1.46589 1.79289 1.94077 1.21170 0.99581 0.94148 1.06882 1.17567 0.94624 0.78306 1.00717 1.91523 1.97332 1.33113 1.90135 1.21515 0.97870 0.96129 1.01917 1.21064 0.98301 0.92465 0.95592 1.23416 1.00892 0.96149 0.95435 1.21366 0.92105 1.00021 1.04877 1.21401 1.01533 0.90955 1.03906 0.91745 0.86739 0.91389 0.82652 0.89334 0.75911 1.21154 1.22383 0.86082 0.85874 0.74253 0.87436 0.91270 0.83109 0.82147 0.81281 0.89214 0.87077 0.81931 0.82303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.11 9.81 113.37 1.11 1.00 16 2 O -0.33 -0.31 10.50 -93.35 -0.98 -1.29 16 3 C 0.09 0.12 6.69 22.49 0.15 0.27 16 4 C -0.12 -0.25 8.59 22.35 0.19 -0.06 16 5 C -0.12 -0.61 5.27 -19.78 -0.10 -0.72 16 6 C -0.07 -0.44 2.38 71.24 0.17 -0.27 16 7 O -0.55 -4.25 12.88 -148.98 -1.92 -6.17 16 8 Si 0.78 2.09 29.92 68.60 2.05 4.14 16 9 C 0.10 0.43 6.66 22.49 0.15 0.58 16 10 O -0.31 -2.31 8.99 -74.35 -0.67 -2.98 16 11 C 0.04 -0.08 5.22 71.24 0.37 0.29 16 12 C 0.52 1.61 7.91 87.66 0.69 2.31 16 13 O -0.57 -8.60 16.10 16.00 0.26 -8.34 16 14 N -0.69 3.16 5.26 -440.04 -2.32 0.84 16 15 C 0.11 -0.42 4.32 45.52 0.20 -0.23 16 16 H 0.09 0.11 7.46 -2.39 -0.02 0.09 16 17 C -0.14 0.70 7.25 31.12 0.23 0.93 16 18 C -0.07 0.44 3.77 -11.02 -0.04 0.40 16 19 H 0.11 -0.72 7.44 -2.39 -0.02 -0.74 16 20 C -0.11 0.39 5.30 -19.82 -0.10 0.28 16 21 C 0.12 0.02 7.25 22.37 0.16 0.18 16 22 F -0.14 -0.22 16.36 44.97 0.74 0.51 16 23 C -0.20 -0.17 10.01 22.35 0.22 0.05 16 24 C 0.11 0.12 7.30 22.37 0.16 0.28 16 25 F -0.14 -0.61 17.27 44.97 0.78 0.16 16 26 C -0.16 0.49 10.02 22.32 0.22 0.72 16 27 C -0.06 0.31 8.59 22.25 0.19 0.50 16 28 C -0.12 0.94 7.29 31.12 0.23 1.17 16 29 C -0.17 0.30 9.03 22.35 0.20 0.50 16 30 C -0.16 0.34 9.03 22.35 0.20 0.54 16 31 H 0.06 -0.53 7.66 -2.38 -0.02 -0.55 16 32 H 0.11 -1.04 8.14 -2.39 -0.02 -1.06 16 33 H 0.07 -0.60 7.66 -2.39 -0.02 -0.61 16 34 H 0.16 -0.24 5.13 -2.91 -0.01 -0.26 16 35 H 0.09 1.03 7.82 -2.39 -0.02 1.01 16 36 H 0.39 -0.74 8.70 -74.06 -0.64 -1.39 16 37 H -0.28 -2.06 7.11 99.48 0.71 -1.35 16 38 H -0.30 -2.86 7.11 99.48 0.71 -2.15 16 39 H 0.12 -1.03 7.66 -2.39 -0.02 -1.05 16 40 H 0.12 -1.06 7.66 -2.39 -0.02 -1.08 16 41 H 0.42 -4.84 8.70 -92.70 -0.81 -5.65 16 42 H 0.11 -0.74 6.33 -2.39 -0.02 -0.76 16 43 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 44 H 0.15 -0.09 8.06 -2.91 -0.02 -0.12 16 45 H 0.16 -1.09 8.06 -2.91 -0.02 -1.11 16 46 H 0.17 -1.79 6.68 -2.91 -0.02 -1.81 16 47 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 48 H 0.11 -1.02 7.71 -2.39 -0.02 -1.03 16 49 H 0.16 -1.44 6.29 -2.91 -0.02 -1.46 16 50 H 0.16 -1.22 6.29 -2.92 -0.02 -1.24 16 Total: 0.00 -29.91 422.93 2.17 -27.74 By element: Atomic # 1 Polarization: -22.98 SS G_CDS: -0.37 Total: -23.35 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 4.61 Total: 8.74 kcal Atomic # 7 Polarization: 3.16 SS G_CDS: -2.32 Total: 0.84 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -3.31 Total: -18.78 kcal Atomic # 9 Polarization: -0.84 SS G_CDS: 1.51 Total: 0.67 kcal Atomic # 14 Polarization: 2.09 SS G_CDS: 2.05 Total: 4.14 kcal Total: -29.91 2.17 -27.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_4974302.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.348 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds