Wall clock time and date at job start Sun Mar 7 2021 00:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35894 * 116.99983 * 2 1 4 4 C 1.38608 * 120.03035 * 180.02562 * 3 2 1 5 5 C 1.38660 * 119.89510 * 179.97438 * 4 3 2 6 6 O 1.35896 * 120.02651 * 179.97438 * 5 4 3 7 7 C 1.42896 * 117.00306 * 0.02822 * 6 5 4 8 8 C 1.50705 * 109.47196 * 179.97438 * 7 6 5 9 9 O 1.21278 * 119.99834 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00185 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00342 * 179.97438 * 10 8 7 12 12 H 1.09006 * 112.85056 * 336.19911 * 11 10 8 13 13 C 1.53783 * 113.61411 * 107.50148 * 11 10 8 14 14 C 1.53778 * 87.07878 * 89.11936 * 13 11 10 15 15 H 1.09000 * 113.61456 * 270.87935 * 14 13 11 16 16 C 1.50708 * 113.69136 * 139.99374 * 14 13 11 17 17 C 1.38451 * 119.98966 * 142.46273 * 16 14 13 18 18 F 1.35106 * 120.00997 * 359.95779 * 17 16 14 19 19 C 1.38434 * 119.97436 * 179.97438 * 17 16 14 20 20 C 1.38392 * 119.95031 * 0.02562 * 19 17 16 21 21 F 1.35110 * 120.01259 * 179.97438 * 20 19 17 22 22 C 1.38495 * 119.97793 * 359.97438 * 20 19 17 23 23 C 1.38190 * 120.02296 * 359.74334 * 22 20 19 24 24 C 1.53779 * 87.08441 * 25.43440 * 14 13 11 25 25 C 1.38749 * 119.94238 * 0.02562 * 5 4 3 26 26 C 1.50703 * 119.97188 * 179.97438 * 25 5 4 27 27 O 1.42896 * 109.47055 * 284.99996 * 26 25 5 28 28 Si 1.86304 * 109.46911 * 164.99888 * 26 25 5 29 29 C 1.38197 * 120.05497 * 0.25048 * 25 5 4 30 30 C 1.38152 * 120.10968 * 359.49366 * 29 25 5 31 31 H 1.08998 * 109.47130 * 299.99915 * 1 2 3 32 32 H 1.08999 * 109.47306 * 60.00356 * 1 2 3 33 33 H 1.09005 * 109.46916 * 180.02562 * 1 2 3 34 34 H 1.08007 * 120.05515 * 359.97438 * 4 3 2 35 35 H 1.09002 * 109.47110 * 299.99373 * 7 6 5 36 36 H 1.09000 * 109.47017 * 59.99846 * 7 6 5 37 37 H 0.97003 * 119.99615 * 0.02562 * 10 8 7 38 38 H 1.08998 * 113.61464 * 203.66762 * 13 11 10 39 39 H 1.08995 * 113.61632 * 334.57244 * 13 11 10 40 40 H 1.08004 * 120.02577 * 180.02562 * 19 17 16 41 41 H 1.08000 * 119.98978 * 180.02562 * 22 20 19 42 42 H 1.08001 * 119.97881 * 180.25925 * 23 22 20 43 43 H 1.09006 * 113.61330 * 220.02160 * 24 14 13 44 44 H 1.09003 * 113.61648 * 89.11113 * 24 14 13 45 45 H 1.09002 * 109.47152 * 44.99804 * 26 25 5 46 46 H 0.96708 * 114.00101 * 299.99358 * 27 26 25 47 47 H 1.48497 * 110.00028 * 58.68223 * 28 26 25 48 48 H 1.48501 * 109.99652 * 179.97438 * 28 26 25 49 49 H 1.08000 * 119.94534 * 179.74526 * 29 25 5 50 50 H 1.08003 * 119.97333 * 180.26058 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4301 1.2841 -0.0005 5 6 4.0567 2.5211 -0.0011 6 8 5.4136 2.5960 -0.0011 7 6 6.1316 1.3606 -0.0011 8 6 7.6125 1.6402 -0.0018 9 8 8.0134 2.7848 -0.0017 10 7 8.4912 0.6183 -0.0014 11 6 9.9308 0.8901 -0.0026 12 1 10.1759 1.8714 -0.4090 13 6 10.6156 0.5892 1.3411 14 6 10.8313 -0.8417 0.8210 15 1 10.0065 -1.5175 1.0470 16 6 12.1763 -1.4198 1.1790 17 6 12.2874 -2.7589 1.5128 18 9 11.1901 -3.5472 1.5183 19 6 13.5230 -3.2897 1.8411 20 6 14.6459 -2.4808 1.8358 21 9 15.8525 -2.9974 2.1565 22 6 14.5325 -1.1416 1.5017 23 6 13.2995 -0.6141 1.1684 24 6 10.7727 -0.2509 -0.5976 25 6 3.2971 3.6821 -0.0005 26 6 3.9774 5.0269 -0.0005 27 8 4.5041 5.2942 1.3007 28 14 2.7436 6.3470 -0.4544 29 6 1.9172 3.6065 0.0058 30 6 1.2906 2.3753 0.0010 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 4.0197 0.3792 -0.0005 35 1 5.8700 0.7882 0.8889 36 1 5.8699 0.7883 -0.8911 37 1 8.1705 -0.2971 -0.0011 38 1 11.5420 1.1431 1.4927 39 1 9.9425 0.6460 2.1966 40 1 13.6107 -4.3343 2.1011 41 1 15.4088 -0.5103 1.4971 42 1 13.2126 0.4294 0.9039 43 1 10.2264 -0.8724 -1.3072 44 1 11.7422 0.0733 -0.9760 45 1 4.7896 5.0232 -0.7275 46 1 3.8357 5.3126 1.9994 47 1 1.6153 6.3411 0.5110 48 1 3.4020 7.6780 -0.4573 49 1 1.3277 4.5114 0.0103 50 1 0.2120 2.3187 0.0017 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_4974312.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:09:39 Heat of formation + Delta-G solvation = -135.001825 kcal Electronic energy + Delta-G solvation = -37114.314383 eV Core-core repulsion = 31711.553317 eV Total energy + Delta-G solvation = -5402.761065 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.147 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -50.08403 -50.05477 -41.90597 -41.48157 -40.47979 -39.79925 -38.78571 -38.24898 -37.00177 -34.72048 -32.31884 -31.98856 -31.70385 -31.24680 -29.39055 -28.35298 -26.74320 -26.14764 -26.11968 -24.36784 -23.79058 -22.87134 -22.50162 -21.89695 -20.33814 -19.94913 -19.35912 -18.65271 -18.28960 -18.10753 -17.88091 -17.54389 -17.24672 -17.15460 -17.05980 -16.85226 -16.66944 -16.54292 -16.48571 -16.38312 -16.03584 -15.78376 -15.52249 -15.51034 -15.20871 -15.15539 -15.02678 -14.61157 -14.49193 -14.03536 -13.80002 -13.74780 -13.57947 -13.52002 -13.42735 -13.33594 -13.13828 -12.86523 -12.57672 -12.48005 -12.30193 -12.08843 -12.01577 -11.75574 -11.66113 -11.62443 -11.34182 -11.05020 -10.51008 -10.21031 -10.10119 -9.70573 -9.61114 -9.10687 -4.92359 -0.14116 -0.04696 0.19820 0.30446 1.32330 1.39416 1.41613 1.56254 1.96774 2.24495 2.26666 2.54763 2.57551 2.80895 3.28212 3.43254 3.45928 3.49888 3.51136 3.63105 3.65959 3.72069 3.80333 3.84952 3.91726 3.94218 4.04167 4.06397 4.06626 4.16068 4.16771 4.34409 4.40367 4.42367 4.46074 4.58342 4.66485 4.68084 4.72793 4.78874 4.81001 4.83195 4.88948 4.89969 4.99060 5.02159 5.06299 5.09155 5.23205 5.24024 5.27757 5.46376 5.53837 5.71229 6.12452 6.34967 6.42023 6.57658 7.08598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.164 3.836 4 C -0.252 4.252 5 C 0.177 3.823 6 O -0.302 6.302 7 C 0.034 3.966 8 C 0.518 3.482 9 O -0.564 6.564 10 N -0.695 5.695 11 C 0.115 3.885 12 H 0.091 0.909 13 C -0.140 4.140 14 C -0.071 4.071 15 H 0.106 0.894 16 C -0.112 4.112 17 C 0.117 3.883 18 F -0.137 7.137 19 C -0.198 4.198 20 C 0.107 3.893 21 F -0.142 7.142 22 C -0.155 4.155 23 C -0.056 4.056 24 C -0.121 4.121 25 C -0.195 4.195 26 C -0.077 4.077 27 O -0.549 6.549 28 Si 0.780 3.220 29 C -0.041 4.041 30 C -0.238 4.238 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.153 0.847 35 H 0.118 0.882 36 H 0.125 0.875 37 H 0.419 0.581 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.151 0.849 41 H 0.161 0.839 42 H 0.170 0.830 43 H 0.089 0.911 44 H 0.112 0.888 45 H 0.098 0.902 46 H 0.381 0.619 47 H -0.263 1.263 48 H -0.308 1.308 49 H 0.156 0.844 50 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.197 -3.892 -2.979 7.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.118 3.882 4 C -0.271 4.271 5 C 0.131 3.869 6 O -0.214 6.214 7 C -0.044 4.044 8 C 0.304 3.696 9 O -0.442 6.442 10 N -0.349 5.349 11 C 0.010 3.990 12 H 0.110 0.890 13 C -0.178 4.178 14 C -0.089 4.089 15 H 0.124 0.876 16 C -0.113 4.113 17 C 0.098 3.902 18 F -0.115 7.115 19 C -0.218 4.218 20 C 0.088 3.912 21 F -0.121 7.121 22 C -0.174 4.174 23 C -0.074 4.074 24 C -0.158 4.158 25 C -0.196 4.196 26 C -0.185 4.185 27 O -0.357 6.357 28 Si 0.684 3.316 29 C -0.059 4.059 30 C -0.256 4.256 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.134 0.866 34 H 0.171 0.829 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.257 0.743 38 H 0.127 0.873 39 H 0.086 0.914 40 H 0.169 0.831 41 H 0.179 0.821 42 H 0.188 0.812 43 H 0.108 0.892 44 H 0.130 0.870 45 H 0.117 0.883 46 H 0.230 0.770 47 H -0.189 1.189 48 H -0.236 1.236 49 H 0.173 0.827 50 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.555 -2.441 -3.051 6.002 hybrid contribution 0.194 -1.302 1.550 2.033 sum -4.361 -3.743 -1.501 5.940 Atomic orbital electron populations 1.23403 0.76007 1.05701 1.02694 1.86055 1.23755 1.26606 1.87930 1.18875 0.91673 0.84962 0.92688 1.20557 0.93399 0.97439 1.15721 1.18575 0.81728 0.93137 0.93461 1.86218 1.15484 1.31586 1.88112 1.22739 0.88533 0.86528 1.06621 1.20408 0.88400 0.85154 0.75612 1.90778 1.80642 1.23112 1.49667 1.45375 1.05408 1.09463 1.74622 1.21877 0.79194 1.00233 0.97694 0.89037 1.23598 1.01923 0.94971 0.97344 1.21552 0.93303 0.96349 0.97710 0.87615 1.19973 0.97660 0.91363 1.02288 1.17292 0.82373 0.88860 1.01711 1.91504 1.51889 1.74043 1.94075 1.21167 0.91147 1.02553 1.06919 1.17569 0.80025 0.92839 1.00782 1.91528 1.42771 1.87504 1.90300 1.21516 1.00765 0.93208 1.01902 1.21068 0.89443 1.01291 0.95580 1.23418 1.01322 0.95741 0.95364 1.19606 0.93488 0.93978 1.12557 1.25149 1.06276 0.99664 0.87365 1.86651 1.38540 1.93065 1.17428 0.94119 0.75456 0.73418 0.88598 1.20949 0.92045 0.98794 0.94101 1.21399 1.01604 0.91255 1.11385 0.91500 0.91070 0.86570 0.82936 0.86410 0.85763 0.74315 0.87336 0.91374 0.83132 0.82099 0.81218 0.89239 0.86953 0.88346 0.77032 1.18926 1.23632 0.82721 0.82557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.20 10.49 -92.35 -0.97 -1.17 16 3 C 0.16 0.24 6.68 22.49 0.15 0.39 16 4 C -0.25 -0.48 8.97 22.46 0.20 -0.28 16 5 C 0.18 0.92 6.66 22.49 0.15 1.07 16 6 O -0.30 -2.37 8.99 -73.34 -0.66 -3.03 16 7 C 0.03 -0.03 5.22 71.24 0.37 0.35 16 8 C 0.52 1.91 7.91 87.66 0.69 2.60 16 9 O -0.56 -8.51 16.10 16.01 0.26 -8.25 16 10 N -0.69 2.65 5.26 -440.04 -2.32 0.33 16 11 C 0.12 -0.39 4.32 45.52 0.20 -0.19 16 12 H 0.09 0.10 7.47 -2.38 -0.02 0.08 16 13 C -0.14 0.63 7.26 31.12 0.23 0.86 16 14 C -0.07 0.40 3.77 -11.01 -0.04 0.36 16 15 H 0.11 -0.61 7.44 -2.39 -0.02 -0.63 16 16 C -0.11 0.33 5.30 -19.81 -0.10 0.23 16 17 C 0.12 0.08 7.24 22.37 0.16 0.24 16 18 F -0.14 -0.33 16.36 44.97 0.74 0.41 16 19 C -0.20 -0.26 10.01 22.35 0.22 -0.04 16 20 C 0.11 0.15 7.30 22.37 0.16 0.32 16 21 F -0.14 -0.65 17.27 44.97 0.78 0.13 16 22 C -0.16 0.45 10.03 22.32 0.22 0.68 16 23 C -0.06 0.29 8.59 22.26 0.19 0.48 16 24 C -0.12 0.90 7.29 31.12 0.23 1.13 16 25 C -0.20 -0.79 5.27 -19.75 -0.10 -0.89 16 26 C -0.08 -0.44 2.37 71.24 0.17 -0.27 16 27 O -0.55 -5.30 12.88 -148.98 -1.92 -7.22 16 28 Si 0.78 0.36 30.25 68.60 2.08 2.44 16 29 C -0.04 0.01 8.65 22.24 0.19 0.21 16 30 C -0.24 0.27 9.04 22.38 0.20 0.47 16 31 H 0.07 -0.54 7.66 -2.39 -0.02 -0.56 16 32 H 0.07 -0.61 7.66 -2.39 -0.02 -0.63 16 33 H 0.12 -1.09 8.14 -2.38 -0.02 -1.11 16 34 H 0.15 -0.38 6.30 -2.91 -0.02 -0.40 16 35 H 0.12 -0.67 7.66 -2.39 -0.02 -0.69 16 36 H 0.12 -0.86 7.66 -2.39 -0.02 -0.88 16 37 H 0.42 -4.34 8.70 -92.71 -0.81 -5.15 16 38 H 0.11 -0.71 6.33 -2.39 -0.02 -0.73 16 39 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.15 -0.02 8.06 -2.91 -0.02 -0.05 16 41 H 0.16 -1.07 8.06 -2.91 -0.02 -1.09 16 42 H 0.17 -1.77 6.68 -2.91 -0.02 -1.79 16 43 H 0.09 -0.77 8.14 -2.38 -0.02 -0.79 16 44 H 0.11 -1.02 7.71 -2.39 -0.02 -1.04 16 45 H 0.10 0.85 7.82 -2.39 -0.02 0.83 16 46 H 0.38 0.85 8.70 -74.05 -0.64 0.21 16 47 H -0.26 -0.21 6.67 99.48 0.66 0.45 16 48 H -0.31 -2.73 7.11 99.48 0.71 -2.02 16 49 H 0.16 -0.70 4.85 -2.91 -0.01 -0.71 16 50 H 0.16 -0.98 6.29 -2.91 -0.02 -1.00 16 Total: 0.00 -27.65 422.58 2.17 -25.47 By element: Atomic # 1 Polarization: -17.41 SS G_CDS: -0.42 Total: -17.83 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 4.61 Total: 8.73 kcal Atomic # 7 Polarization: 2.65 SS G_CDS: -2.32 Total: 0.33 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -3.29 Total: -19.67 kcal Atomic # 9 Polarization: -0.98 SS G_CDS: 1.51 Total: 0.53 kcal Atomic # 14 Polarization: 0.36 SS G_CDS: 2.08 Total: 2.44 kcal Total: -27.65 2.17 -25.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_4974312.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.528 kcal (2) G-P(sol) polarization free energy of solvation -27.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds