Wall clock time and date at job start Sun Mar 7 2021 00:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35992 * 117.00102 * 2 1 4 4 C 1.39155 * 120.07450 * 180.02562 * 3 2 1 5 5 O 1.35999 * 120.07079 * 359.97203 * 4 3 2 6 6 C 1.42899 * 116.99737 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47134 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99819 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00120 * 179.97438 * 7 6 5 10 10 C 1.46496 * 119.99797 * 180.02562 * 9 7 6 11 11 H 1.08999 * 112.85455 * 336.19767 * 10 9 7 12 12 C 1.53786 * 113.61513 * 107.50362 * 10 9 7 13 13 C 1.53784 * 87.07924 * 89.11240 * 12 10 9 14 14 H 1.08995 * 113.69158 * 270.87295 * 13 12 10 15 15 C 1.50697 * 113.61053 * 139.98054 * 13 12 10 16 16 C 1.38452 * 119.98628 * 142.23025 * 15 13 12 17 17 F 1.35105 * 120.01314 * 0.02562 * 16 15 13 18 18 C 1.38438 * 119.97618 * 179.77009 * 16 15 13 19 19 C 1.38393 * 119.95148 * 0.47987 * 18 16 15 20 20 F 1.35094 * 120.01760 * 179.79046 * 19 18 16 21 21 C 1.38496 * 119.97193 * 359.77100 * 19 18 16 22 22 C 1.38190 * 120.02548 * 0.02562 * 21 19 18 23 23 C 1.53778 * 113.61361 * 205.00187 * 10 9 7 24 24 C 1.38563 * 119.85389 * 180.02562 * 4 3 2 25 25 C 1.38242 * 120.00125 * 359.97438 * 24 4 3 26 26 C 1.38258 * 120.14563 * 359.97438 * 25 24 4 27 27 C 1.50699 * 119.92693 * 179.97438 * 26 25 24 28 28 O 1.42901 * 109.46830 * 119.99588 * 27 26 25 29 29 Si 1.86298 * 109.46950 * 0.02562 * 27 26 25 30 30 C 1.38240 * 120.14267 * 0.26821 * 26 25 24 31 31 H 1.09004 * 109.46853 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47107 * 300.00192 * 1 2 3 33 33 H 1.08999 * 109.46951 * 60.00278 * 1 2 3 34 34 H 1.09000 * 109.46929 * 300.00265 * 6 5 4 35 35 H 1.09005 * 109.47040 * 60.00169 * 6 5 4 36 36 H 0.96994 * 119.99395 * 0.02562 * 9 7 6 37 37 H 1.08997 * 113.61553 * 203.66233 * 12 10 9 38 38 H 1.09003 * 113.61322 * 334.56756 * 12 10 9 39 39 H 1.08001 * 120.02570 * 180.25643 * 18 16 15 40 40 H 1.07997 * 119.98904 * 179.97438 * 21 19 18 41 41 H 1.07998 * 119.97580 * 180.02562 * 22 21 19 42 42 H 1.08999 * 113.61538 * 25.43065 * 23 10 9 43 43 H 1.08999 * 113.61560 * 156.33690 * 23 10 9 44 44 H 1.07999 * 120.00038 * 180.02562 * 24 4 3 45 45 H 1.07994 * 119.92863 * 180.02562 * 25 24 4 46 46 H 1.08991 * 109.47351 * 239.99735 * 27 26 25 47 47 H 0.96708 * 114.00246 * 299.99864 * 28 27 26 48 48 H 1.48506 * 109.99834 * 180.02562 * 29 27 26 49 49 H 1.48502 * 110.00011 * 301.31529 * 29 27 26 50 50 H 1.08000 * 119.99501 * 179.74641 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2863 -0.0005 5 8 4.1795 0.1476 -0.0005 6 6 5.6003 0.3006 -0.0005 7 6 6.2519 -1.0582 0.0002 8 8 5.5670 -2.0591 0.0002 9 7 7.5958 -1.1612 -0.0002 10 6 8.2291 -2.4822 -0.0001 11 1 7.5836 -3.2612 0.4056 12 6 8.8772 -2.8548 -1.3441 13 6 10.1581 -2.1817 -0.8234 14 1 10.2155 -1.1167 -1.0480 15 6 11.4191 -2.9244 -1.1827 16 6 12.5632 -2.2221 -1.5212 17 9 12.5494 -0.8712 -1.5291 18 6 13.7229 -2.9046 -1.8467 19 6 13.7344 -4.2885 -1.8428 20 9 14.8641 -4.9559 -2.1642 21 6 12.5873 -4.9890 -1.5088 22 6 11.4314 -4.3066 -1.1800 23 6 9.6471 -2.4855 0.5950 24 6 4.0603 2.5233 0.0000 25 6 3.3030 3.6798 0.0005 26 6 1.9224 3.6057 0.0000 27 6 1.1016 4.8696 0.0012 28 8 0.2777 4.9035 -1.1659 29 14 2.2365 6.3470 0.0024 30 6 1.2933 2.3748 0.0045 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 5.9065 0.8504 -0.8905 35 1 5.9065 0.8504 0.8895 36 1 8.1434 -0.3607 -0.0006 37 1 8.9795 -3.9292 -1.4965 38 1 8.4329 -2.3454 -2.1992 39 1 14.6170 -2.3575 -2.1069 40 1 12.5958 -6.0689 -1.5060 41 1 10.5375 -4.8537 -0.9193 42 1 9.8244 -1.6779 1.3052 43 1 9.9599 -3.4589 0.9726 44 1 5.1386 2.5840 -0.0008 45 1 3.7908 4.6433 0.0005 46 1 0.4725 4.8934 0.8909 47 1 0.7719 4.8849 -1.9970 48 1 1.4392 7.5999 0.0042 49 1 3.1212 6.3069 1.1945 50 1 0.2147 2.3197 0.0082 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_60476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:09:48 Heat of formation + Delta-G solvation = -135.427484 kcal Electronic energy + Delta-G solvation = -36731.369265 eV Core-core repulsion = 31328.589742 eV Total energy + Delta-G solvation = -5402.779523 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.147 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -50.06059 -50.03819 -41.87155 -41.47105 -40.39552 -39.39152 -38.91365 -38.51609 -36.91314 -34.68776 -32.14245 -31.87074 -31.57424 -31.37931 -29.46062 -28.45182 -26.71466 -26.32764 -25.95643 -24.31189 -23.65660 -22.90790 -22.54714 -21.82455 -20.30013 -19.79107 -19.33258 -18.54457 -18.44037 -18.18449 -17.91617 -17.54235 -17.35697 -17.03895 -16.94166 -16.86476 -16.66500 -16.58474 -16.36165 -16.09092 -15.91590 -15.68172 -15.58182 -15.49638 -15.44831 -15.16313 -14.92911 -14.60711 -14.30745 -14.01234 -13.78601 -13.75748 -13.58764 -13.54821 -13.49535 -13.38867 -12.83717 -12.64456 -12.55534 -12.53402 -12.17026 -12.06707 -12.04037 -12.00404 -11.73210 -11.72234 -11.31369 -11.00655 -10.43632 -10.17689 -10.07742 -9.78741 -9.58862 -8.90965 -4.96560 -0.11993 -0.02611 0.16931 0.27988 1.34056 1.44376 1.47461 1.67007 2.00195 2.28734 2.30941 2.56382 2.57123 2.83047 3.30782 3.45670 3.48334 3.49424 3.53753 3.65467 3.68632 3.69690 3.86868 3.87814 3.91168 3.94411 4.05453 4.09314 4.12954 4.14661 4.18681 4.28682 4.30525 4.36887 4.50001 4.60892 4.64510 4.66145 4.70646 4.75338 4.83785 4.85639 4.91546 4.92186 5.00572 5.02040 5.08748 5.11998 5.12610 5.26814 5.37322 5.55582 5.60209 5.73354 5.96951 6.40809 6.54147 6.77771 7.13987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.334 6.334 3 C 0.077 3.923 4 C 0.085 3.915 5 O -0.314 6.314 6 C 0.033 3.967 7 C 0.516 3.484 8 O -0.570 6.570 9 N -0.694 5.694 10 C 0.115 3.885 11 H 0.089 0.911 12 C -0.139 4.139 13 C -0.070 4.070 14 H 0.109 0.891 15 C -0.111 4.111 16 C 0.118 3.882 17 F -0.136 7.136 18 C -0.199 4.199 19 C 0.107 3.893 20 F -0.143 7.143 21 C -0.156 4.156 22 C -0.057 4.057 23 C -0.122 4.122 24 C -0.159 4.159 25 C -0.111 4.111 26 C -0.119 4.119 27 C -0.076 4.076 28 O -0.557 6.557 29 Si 0.787 3.213 30 C -0.153 4.153 31 H 0.111 0.889 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.421 0.579 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.151 0.849 40 H 0.160 0.840 41 H 0.170 0.830 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.176 0.824 45 H 0.159 0.841 46 H 0.104 0.896 47 H 0.395 0.605 48 H -0.303 1.303 49 H -0.279 1.279 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.846 3.460 -0.741 5.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.032 3.968 4 C 0.039 3.961 5 O -0.227 6.227 6 C -0.044 4.044 7 C 0.302 3.698 8 O -0.448 6.448 9 N -0.348 5.348 10 C 0.009 3.991 11 H 0.107 0.893 12 C -0.178 4.178 13 C -0.088 4.088 14 H 0.127 0.873 15 C -0.112 4.112 16 C 0.099 3.901 17 F -0.114 7.114 18 C -0.218 4.218 19 C 0.087 3.913 20 F -0.122 7.122 21 C -0.175 4.175 22 C -0.074 4.074 23 C -0.160 4.160 24 C -0.177 4.177 25 C -0.128 4.128 26 C -0.119 4.119 27 C -0.185 4.185 28 O -0.366 6.366 29 Si 0.692 3.308 30 C -0.172 4.172 31 H 0.130 0.870 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.259 0.741 37 H 0.125 0.875 38 H 0.089 0.911 39 H 0.169 0.831 40 H 0.178 0.822 41 H 0.187 0.813 42 H 0.108 0.892 43 H 0.128 0.872 44 H 0.193 0.807 45 H 0.176 0.824 46 H 0.121 0.879 47 H 0.245 0.755 48 H -0.232 1.232 49 H -0.205 1.205 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.195 3.101 0.110 4.454 hybrid contribution -0.037 0.055 0.191 0.202 sum 3.158 3.155 0.301 4.474 Atomic orbital electron populations 1.23280 0.76832 1.05211 1.02054 1.86187 1.22971 1.26632 1.89088 1.18663 0.89924 0.85579 1.02657 1.18579 0.88171 0.86546 1.02765 1.86222 1.18203 1.29002 1.89302 1.22784 0.79369 0.95221 1.07060 1.20530 0.82934 0.90814 0.75487 1.90776 1.64036 1.40104 1.49844 1.45361 1.05063 1.09738 1.74614 1.21864 0.94150 0.85322 0.97738 0.89293 1.23597 0.94355 1.02475 0.97362 1.21561 0.89716 0.99970 0.97577 0.87329 1.19976 0.94436 0.94637 1.02199 1.17279 0.94279 0.76942 1.01630 1.91505 1.96998 1.28849 1.94061 1.21171 0.99991 0.93685 1.06965 1.17573 0.83359 0.89540 1.00808 1.91522 1.49814 1.80536 1.90279 1.21512 0.91446 1.02520 1.01994 1.21067 0.98497 0.92261 0.95603 1.23416 0.92303 1.04772 0.95469 1.21383 1.02275 0.89322 1.04748 1.21012 0.92298 0.99022 1.00492 1.20200 0.94483 0.94816 1.02447 1.25261 0.99793 1.02481 0.91010 1.86463 1.36780 1.96939 1.16376 0.93633 0.78281 0.72440 0.86438 1.21000 1.00495 0.90588 1.05072 0.87041 0.91973 0.91666 0.85315 0.85609 0.74142 0.87480 0.91109 0.83143 0.82200 0.81265 0.89220 0.87173 0.80654 0.82433 0.87863 0.75460 1.23175 1.20518 0.84207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.81 113.37 1.11 1.16 16 2 O -0.33 -3.63 10.28 -79.59 -0.82 -4.44 16 3 C 0.08 0.60 6.70 22.57 0.15 0.75 16 4 C 0.08 0.43 6.70 22.57 0.15 0.58 16 5 O -0.31 -2.44 9.45 -67.13 -0.63 -3.07 16 6 C 0.03 -0.11 5.22 71.23 0.37 0.26 16 7 C 0.52 1.12 7.91 87.65 0.69 1.81 16 8 O -0.57 -8.21 16.10 16.00 0.26 -7.95 16 9 N -0.69 3.88 5.26 -440.04 -2.32 1.56 16 10 C 0.11 -0.52 4.32 45.52 0.20 -0.32 16 11 H 0.09 0.03 7.46 -2.39 -0.02 0.01 16 12 C -0.14 0.83 7.25 31.12 0.23 1.05 16 13 C -0.07 0.50 3.78 -11.01 -0.04 0.45 16 14 H 0.11 -0.83 7.44 -2.39 -0.02 -0.85 16 15 C -0.11 0.45 5.29 -19.82 -0.10 0.35 16 16 C 0.12 -0.05 7.24 22.37 0.16 0.11 16 17 F -0.14 -0.14 16.36 44.97 0.74 0.59 16 18 C -0.20 -0.09 10.01 22.35 0.22 0.13 16 19 C 0.11 0.08 7.30 22.37 0.16 0.25 16 20 F -0.14 -0.58 17.27 44.97 0.78 0.20 16 21 C -0.16 0.55 10.03 22.32 0.22 0.78 16 22 C -0.06 0.34 8.61 22.26 0.19 0.53 16 23 C -0.12 1.03 7.29 31.12 0.23 1.26 16 24 C -0.16 0.48 9.04 22.35 0.20 0.69 16 25 C -0.11 0.40 8.66 22.28 0.19 0.59 16 26 C -0.12 0.01 5.39 -19.86 -0.11 -0.10 16 27 C -0.08 0.10 2.82 71.24 0.20 0.30 16 28 O -0.56 0.18 12.77 -148.98 -1.90 -1.73 16 29 Si 0.79 -3.35 29.78 68.60 2.04 -1.31 16 30 C -0.15 -0.57 8.60 22.35 0.19 -0.37 16 31 H 0.11 -0.04 8.14 -2.38 -0.02 -0.06 16 32 H 0.06 0.02 7.65 -2.39 -0.02 0.00 16 33 H 0.06 0.00 7.67 -2.39 -0.02 -0.01 16 34 H 0.13 -1.36 7.66 -2.39 -0.02 -1.38 16 35 H 0.13 -1.27 7.66 -2.38 -0.02 -1.29 16 36 H 0.42 -5.37 8.70 -92.71 -0.81 -6.18 16 37 H 0.11 -0.82 6.31 -2.39 -0.02 -0.84 16 38 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.15 -0.15 8.06 -2.91 -0.02 -0.17 16 40 H 0.16 -1.14 8.06 -2.91 -0.02 -1.16 16 41 H 0.17 -1.88 6.66 -2.91 -0.02 -1.90 16 42 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 43 H 0.11 -1.07 7.72 -2.39 -0.02 -1.09 16 44 H 0.18 -1.99 6.30 -2.91 -0.02 -2.01 16 45 H 0.16 -1.46 4.87 -2.91 -0.01 -1.47 16 46 H 0.10 0.03 7.96 -2.39 -0.02 0.01 16 47 H 0.40 -3.31 8.70 -74.05 -0.64 -3.95 16 48 H -0.30 -1.19 7.11 99.48 0.71 -0.48 16 49 H -0.28 0.18 7.11 99.48 0.71 0.88 16 50 H 0.14 0.35 6.30 -2.91 -0.02 0.33 16 Total: 0.00 -31.07 423.07 2.40 -28.67 By element: Atomic # 1 Polarization: -22.41 SS G_CDS: -0.37 Total: -22.78 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 4.63 Total: 10.25 kcal Atomic # 7 Polarization: 3.88 SS G_CDS: -2.32 Total: 1.56 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -3.10 Total: -17.19 kcal Atomic # 9 Polarization: -0.72 SS G_CDS: 1.51 Total: 0.79 kcal Atomic # 14 Polarization: -3.35 SS G_CDS: 2.04 Total: -1.31 kcal Total: -31.07 2.40 -28.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_60476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.754 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds