Wall clock time and date at job start Sun Mar 7 2021 00:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86306 * 109.46981 * 2 1 4 4 C 1.50704 * 109.47306 * 240.00334 * 2 1 3 5 5 C 1.35456 * 125.56293 * 119.97284 * 4 2 1 6 6 C 1.39834 * 107.86157 * 180.02562 * 5 4 2 7 7 C 1.37877 * 107.08815 * 0.02562 * 6 5 4 8 8 C 1.46679 * 126.23636 * 179.97438 * 7 6 5 9 9 O 1.21693 * 119.99680 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00079 * 180.02562 * 8 7 6 11 11 C 1.46495 * 119.99987 * 180.02562 * 10 8 7 12 12 H 1.08995 * 112.85302 * 336.19107 * 11 10 8 13 13 C 1.53783 * 113.69591 * 107.46287 * 11 10 8 14 14 C 1.53782 * 87.07977 * 89.12369 * 13 11 10 15 15 H 1.08994 * 113.69133 * 270.87053 * 14 13 11 16 16 C 1.50703 * 113.60819 * 139.98487 * 14 13 11 17 17 C 1.38185 * 119.98980 * 322.49837 * 16 14 13 18 18 C 1.38232 * 120.04918 * 180.02562 * 17 16 14 19 19 C 1.38447 * 120.02761 * 359.97438 * 18 17 16 20 20 F 1.35095 * 120.01281 * 180.02562 * 19 18 17 21 21 C 1.38445 * 119.97471 * 0.02562 * 19 18 17 22 22 C 1.38398 * 119.94690 * 0.28137 * 21 19 18 23 23 F 1.35104 * 120.00972 * 179.71479 * 22 21 19 24 24 C 1.53782 * 87.08260 * 25.43603 * 14 13 11 25 25 N 1.35535 * 125.56006 * 300.28282 * 4 2 1 26 26 H 0.96701 * 113.99964 * 59.99705 * 1 2 3 27 27 H 1.08997 * 109.47245 * 120.00114 * 2 1 3 28 28 H 1.48504 * 110.00212 * 298.68226 * 3 2 1 29 29 H 1.48497 * 109.99675 * 60.00112 * 3 2 1 30 30 H 1.07994 * 126.06750 * 0.02562 * 5 4 2 31 31 H 1.07996 * 126.46118 * 179.97438 * 6 5 4 32 32 H 0.97002 * 120.00265 * 359.97438 * 10 8 7 33 33 H 1.09006 * 113.60778 * 334.57647 * 13 11 10 34 34 H 1.08994 * 113.61707 * 203.67993 * 13 11 10 35 35 H 1.08002 * 119.97601 * 0.04966 * 17 16 14 36 36 H 1.08001 * 119.98496 * 180.02562 * 18 17 16 37 37 H 1.08002 * 120.02257 * 179.97438 * 21 19 18 38 38 H 1.08997 * 113.61331 * 89.11476 * 24 14 13 39 39 H 1.09000 * 113.61450 * 220.01699 * 24 14 13 40 40 H 0.96994 * 125.68034 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 2.7130 -0.1633 -2.1921 6 6 2.9563 -1.1454 -3.1573 7 6 2.3013 -2.2873 -2.7474 8 6 2.2771 -3.5733 -3.4524 9 8 2.8755 -3.7019 -4.5042 10 7 1.5922 -4.6125 -2.9354 11 6 1.5685 -5.8970 -3.6392 12 1 1.7614 -5.7981 -4.7074 13 6 2.4109 -6.9896 -2.9598 14 6 1.1519 -7.3482 -2.1528 15 1 1.0553 -6.7906 -1.2212 16 6 0.9538 -8.8310 -1.9705 17 6 1.2686 -9.7011 -2.9968 18 6 1.0869 -11.0614 -2.8312 19 6 0.5897 -11.5536 -1.6365 20 9 0.4127 -12.8831 -1.4747 21 6 0.2740 -10.6827 -0.6076 22 6 0.4503 -9.3205 -0.7768 23 9 0.1372 -8.4691 0.2244 24 6 0.3349 -6.7555 -3.3130 25 7 1.6699 -1.9991 -1.5586 26 1 -0.3933 0.4417 -0.7650 27 1 1.7923 -0.5138 0.8899 28 1 1.5878 2.4587 -1.2242 29 1 1.5614 2.4678 1.2085 30 1 3.0826 0.8513 -2.2100 31 1 3.5456 -1.0309 -4.0550 32 1 1.1155 -4.5101 -2.0968 33 1 3.2240 -6.5973 -2.3491 34 1 2.7332 -7.7783 -3.6395 35 1 1.6573 -9.3182 -3.9289 36 1 1.3337 -11.7406 -3.6338 37 1 -0.1143 -11.0658 0.3246 38 1 0.0897 -7.4803 -4.0893 39 1 -0.5278 -6.1743 -2.9874 40 1 1.1290 -2.6161 -1.0413 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_6580494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:10:04 Heat of formation + Delta-G solvation = -54.224545 kcal Electronic energy + Delta-G solvation = -27526.498239 eV Core-core repulsion = 23138.479791 eV Total energy + Delta-G solvation = -4388.018448 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.112 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.11118 -50.06877 -42.55999 -41.41747 -40.04687 -38.68730 -37.82261 -34.79224 -32.28948 -31.91058 -31.66651 -31.07341 -27.24087 -26.77499 -25.99540 -24.37628 -23.56608 -22.78165 -21.60791 -21.19203 -20.32063 -19.93326 -19.32363 -18.33944 -18.16824 -17.42504 -17.08299 -16.93866 -16.71656 -16.62644 -16.40394 -16.34574 -16.06578 -15.57262 -15.45952 -15.30364 -15.12424 -14.90082 -14.54418 -14.35949 -14.03388 -13.96458 -13.81287 -13.66273 -13.55760 -13.47066 -12.88093 -12.59058 -12.35131 -12.12145 -11.91185 -11.79051 -11.40256 -11.35168 -10.84759 -10.29147 -10.12374 -10.07575 -9.63050 -9.28748 -4.83179 -0.15653 -0.06142 0.28405 1.22329 1.55129 1.69979 1.87361 1.96353 2.20861 2.23942 2.26573 2.79338 3.25402 3.34160 3.41106 3.44923 3.57332 3.60390 3.63637 3.76712 3.83855 3.90467 4.03217 4.13627 4.26141 4.32560 4.50591 4.55505 4.65932 4.70298 4.78397 4.81251 4.85291 4.88164 4.95673 4.97147 5.04211 5.06238 5.11712 5.20764 5.47866 5.59002 5.69808 5.79511 6.25127 6.39588 6.42914 7.00843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.064 4.064 3 Si 0.795 3.205 4 C 0.031 3.969 5 C -0.205 4.205 6 C -0.116 4.116 7 C -0.065 4.065 8 C 0.592 3.408 9 O -0.566 6.566 10 N -0.702 5.702 11 C 0.115 3.885 12 H 0.098 0.902 13 C -0.137 4.137 14 C -0.072 4.072 15 H 0.101 0.899 16 C -0.112 4.112 17 C -0.055 4.055 18 C -0.154 4.154 19 C 0.108 3.892 20 F -0.142 7.142 21 C -0.199 4.199 22 C 0.115 3.885 23 F -0.138 7.138 24 C -0.123 4.123 25 N -0.513 5.513 26 H 0.390 0.610 27 H 0.134 0.866 28 H -0.282 1.282 29 H -0.300 1.300 30 H 0.168 0.832 31 H 0.147 0.853 32 H 0.407 0.593 33 H 0.068 0.932 34 H 0.113 0.887 35 H 0.173 0.827 36 H 0.163 0.837 37 H 0.150 0.850 38 H 0.115 0.885 39 H 0.083 0.917 40 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.344 0.839 0.805 1.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.172 4.172 3 Si 0.698 3.302 4 C -0.088 4.088 5 C -0.228 4.228 6 C -0.143 4.143 7 C -0.179 4.179 8 C 0.381 3.619 9 O -0.445 6.445 10 N -0.353 5.353 11 C 0.010 3.990 12 H 0.116 0.884 13 C -0.175 4.175 14 C -0.090 4.090 15 H 0.119 0.881 16 C -0.113 4.113 17 C -0.073 4.073 18 C -0.173 4.173 19 C 0.088 3.912 20 F -0.121 7.121 21 C -0.218 4.218 22 C 0.096 3.904 23 F -0.117 7.117 24 C -0.161 4.161 25 N -0.111 5.111 26 H 0.239 0.761 27 H 0.152 0.848 28 H -0.209 1.209 29 H -0.227 1.227 30 H 0.185 0.815 31 H 0.165 0.835 32 H 0.243 0.757 33 H 0.087 0.913 34 H 0.131 0.869 35 H 0.190 0.810 36 H 0.180 0.820 37 H 0.168 0.832 38 H 0.133 0.867 39 H 0.101 0.899 40 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 0.512 1.068 0.708 1.380 hybrid contribution -1.728 -0.786 0.602 1.991 sum -1.216 0.282 1.310 1.810 Atomic orbital electron populations 1.86578 1.18142 1.80498 1.50476 1.25083 0.83577 1.12199 0.96358 0.93298 0.90198 0.70096 0.76570 1.21269 1.02921 0.85074 0.99505 1.20944 1.05220 1.01277 0.95400 1.21501 1.00838 0.91343 1.00597 1.20316 1.09037 0.96318 0.92184 1.17192 0.78290 0.82532 0.83851 1.90846 1.45957 1.83714 1.23963 1.45468 1.52488 1.10833 1.26494 1.21916 0.97885 0.81728 0.97520 0.88380 1.23595 0.96153 0.98607 0.99180 1.21535 0.98117 0.89995 0.99376 0.88125 1.19958 1.01413 0.97314 0.92611 1.21079 0.95963 0.90973 0.99250 1.21528 1.01442 0.97465 0.96841 1.17570 1.01023 0.77204 0.95380 1.91525 1.93155 1.31319 1.96067 1.21169 1.06879 0.92177 1.01593 1.17320 1.00512 0.86602 0.85986 1.91499 1.90625 1.69945 1.59594 1.23436 0.96310 0.98518 0.97816 1.41898 1.39486 1.11434 1.18247 0.76071 0.84796 1.20859 1.22749 0.81457 0.83507 0.75658 0.91323 0.86873 0.80999 0.81952 0.83188 0.86655 0.89853 0.73375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.29 12.88 -148.98 -1.92 -0.63 16 2 C -0.06 0.32 3.08 71.24 0.22 0.54 16 3 Si 0.80 -4.18 30.54 68.60 2.10 -2.09 16 4 C 0.03 -0.09 6.47 41.35 0.27 0.18 16 5 C -0.20 0.25 9.32 22.01 0.21 0.45 16 6 C -0.12 -0.36 10.65 22.57 0.24 -0.12 16 7 C -0.06 -0.14 7.06 40.35 0.28 0.14 16 8 C 0.59 2.66 7.79 86.45 0.67 3.33 16 9 O -0.57 -7.17 16.48 -4.33 -0.07 -7.24 16 10 N -0.70 1.81 5.26 -444.01 -2.34 -0.53 16 11 C 0.11 -0.41 4.32 45.52 0.20 -0.22 16 12 H 0.10 -0.02 7.46 -2.39 -0.02 -0.04 16 13 C -0.14 0.72 7.25 31.12 0.23 0.94 16 14 C -0.07 0.41 3.78 -11.01 -0.04 0.36 16 15 H 0.10 -0.52 7.45 -2.39 -0.02 -0.54 16 16 C -0.11 0.36 5.30 -19.81 -0.10 0.25 16 17 C -0.06 0.32 8.61 22.26 0.19 0.52 16 18 C -0.15 0.55 10.02 22.32 0.22 0.77 16 19 C 0.11 0.11 7.30 22.37 0.16 0.28 16 20 F -0.14 -0.60 17.27 44.97 0.78 0.18 16 21 C -0.20 -0.24 10.01 22.36 0.22 -0.01 16 22 C 0.12 0.08 7.24 22.37 0.16 0.24 16 23 F -0.14 -0.37 16.36 44.97 0.74 0.37 16 24 C -0.12 0.89 7.29 31.12 0.23 1.12 16 25 N -0.51 1.60 5.99 -171.91 -1.03 0.57 16 26 H 0.39 -2.71 8.70 -74.06 -0.64 -3.36 16 27 H 0.13 -1.01 7.96 -2.39 -0.02 -1.03 16 28 H -0.28 0.16 7.11 99.48 0.71 0.87 16 29 H -0.30 -0.69 7.11 99.48 0.71 0.02 16 30 H 0.17 -0.91 6.17 -2.91 -0.02 -0.92 16 31 H 0.15 0.52 8.06 -2.91 -0.02 0.50 16 32 H 0.41 -3.12 7.83 -92.71 -0.73 -3.85 16 33 H 0.07 -0.18 8.14 -2.38 -0.02 -0.20 16 34 H 0.11 -0.90 6.31 -2.39 -0.02 -0.92 16 35 H 0.17 -1.97 6.65 -2.91 -0.02 -1.98 16 36 H 0.16 -1.20 8.06 -2.91 -0.02 -1.23 16 37 H 0.15 -0.03 8.06 -2.91 -0.02 -0.05 16 38 H 0.12 -1.07 7.72 -2.39 -0.02 -1.09 16 39 H 0.08 -0.63 8.14 -2.39 -0.02 -0.65 16 40 H 0.43 -3.36 8.19 -92.71 -0.76 -4.12 16 Total: 0.00 -19.83 349.40 0.66 -19.17 By element: Atomic # 1 Polarization: -17.63 SS G_CDS: -0.95 Total: -18.58 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 3.36 Total: 8.78 kcal Atomic # 7 Polarization: 3.41 SS G_CDS: -3.37 Total: 0.04 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -1.99 Total: -7.87 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 1.51 Total: 0.55 kcal Atomic # 14 Polarization: -4.18 SS G_CDS: 2.10 Total: -2.09 kcal Total: -19.83 0.66 -19.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_6580494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.054 kcal (2) G-P(sol) polarization free energy of solvation -19.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds