Wall clock time and date at job start Sun Mar 7 2021 00:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35965 * 116.99638 * 2 1 4 4 C 1.39449 * 120.11515 * 179.72366 * 3 2 1 5 5 O 1.34774 * 133.24580 * 359.97438 * 4 3 2 6 6 C 1.34932 * 110.84082 * 180.02562 * 5 4 3 7 7 C 1.46990 * 125.13634 * 179.97438 * 6 5 4 8 8 O 1.21653 * 119.99933 * 180.02562 * 7 6 5 9 9 N 1.34781 * 120.00270 * 0.02562 * 7 6 5 10 10 C 1.46500 * 120.00009 * 179.97438 * 9 7 6 11 11 H 1.09008 * 112.84841 * 336.19430 * 10 9 7 12 12 C 1.53778 * 113.61412 * 107.50421 * 10 9 7 13 13 C 1.53774 * 87.08143 * 89.11713 * 12 10 9 14 14 H 1.09005 * 113.61334 * 270.88533 * 13 12 10 15 15 C 1.50699 * 113.69327 * 139.99428 * 13 12 10 16 16 C 1.38454 * 119.99004 * 142.18313 * 15 13 12 17 17 F 1.35107 * 120.01143 * 0.02824 * 16 15 13 18 18 C 1.38436 * 119.97423 * 179.76729 * 16 15 13 19 19 C 1.38400 * 119.95229 * 0.48719 * 18 16 15 20 20 F 1.35100 * 120.01517 * 179.78626 * 19 18 16 21 21 C 1.38501 * 119.97077 * 359.77111 * 19 18 16 22 22 C 1.38189 * 120.02661 * 359.97438 * 21 19 18 23 23 C 1.53775 * 113.61471 * 205.00058 * 10 9 7 24 24 C 1.35813 * 109.71902 * 359.44997 * 6 5 4 25 25 C 1.40613 * 119.13083 * 179.75744 * 4 3 2 26 26 C 1.39773 * 120.12426 * 0.50277 * 25 4 3 27 27 C 1.50692 * 120.09967 * 179.75174 * 26 25 4 28 28 O 1.42902 * 109.47748 * 75.01649 * 27 26 25 29 29 Si 1.86302 * 109.47334 * 195.01969 * 27 26 25 30 30 C 1.36635 * 119.80656 * 359.76274 * 26 25 4 31 31 C 1.38252 * 120.12195 * 0.02562 * 3 2 1 32 32 H 1.08996 * 109.47352 * 299.99786 * 1 2 3 33 33 H 1.08996 * 109.47452 * 60.00239 * 1 2 3 34 34 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 35 35 H 0.96999 * 119.99549 * 0.02562 * 9 7 6 36 36 H 1.09005 * 113.61352 * 203.66884 * 12 10 9 37 37 H 1.08997 * 113.61447 * 334.56305 * 12 10 9 38 38 H 1.08002 * 120.02782 * 180.25662 * 18 16 15 39 39 H 1.08002 * 119.98499 * 180.02562 * 21 19 18 40 40 H 1.07994 * 119.97217 * 180.02562 * 22 21 19 41 41 H 1.09002 * 113.61526 * 25.43337 * 23 10 9 42 42 H 1.08996 * 113.61730 * 156.33456 * 23 10 9 43 43 H 1.08003 * 126.95432 * 179.97438 * 24 6 5 44 44 H 1.09004 * 109.46633 * 315.01780 * 27 26 25 45 45 H 0.96697 * 114.00397 * 180.02562 * 28 27 26 46 46 H 1.48498 * 109.99977 * 178.67545 * 29 27 26 47 47 H 1.48505 * 109.99790 * 299.99438 * 29 27 26 48 48 H 1.08003 * 119.74596 * 180.02562 * 30 26 25 49 49 H 1.08005 * 119.66437 * 359.96949 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4386 1.2874 0.0058 5 8 4.4140 0.3573 0.0125 6 6 5.6316 0.9388 0.0168 7 6 6.9130 0.2185 0.0249 8 8 7.9594 0.8389 0.0287 9 7 6.9286 -1.1292 0.0281 10 6 8.2057 -1.8470 0.0357 11 1 9.0268 -1.2541 -0.3674 12 6 8.5288 -2.5151 1.3825 13 6 7.7766 -3.7506 0.8607 14 1 6.7091 -3.7370 1.0806 15 6 8.4326 -5.0575 1.2251 16 6 7.6545 -6.1520 1.5623 17 9 6.3074 -6.0487 1.5641 18 6 8.2573 -7.3538 1.8923 19 6 9.6374 -7.4569 1.8946 20 9 10.2271 -8.6279 2.2207 21 6 10.4138 -6.3592 1.5622 22 6 9.8109 -5.1615 1.2278 23 6 8.1197 -3.2633 -0.5569 24 6 5.4944 2.2898 0.0007 25 6 4.0553 2.5510 0.0005 26 6 3.2765 3.7117 0.0001 27 6 3.9380 5.0657 0.0001 28 8 4.4604 5.3407 -1.3013 29 14 2.6862 6.3684 0.4548 30 6 1.9136 3.6150 0.0001 31 6 1.2956 2.3725 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 6.0942 -1.6238 0.0247 36 1 9.5937 -2.6865 1.5405 37 1 8.0452 -2.0369 2.2343 38 1 7.6511 -8.2092 2.1514 39 1 11.4909 -6.4395 1.5635 40 1 10.4172 -4.3063 0.9683 41 1 7.3058 -3.3893 -1.2709 42 1 9.0726 -3.6395 -0.9292 43 1 6.2874 3.0231 0.0000 44 1 4.7504 5.0731 0.7268 45 1 4.9017 6.1980 -1.3749 46 1 3.3335 7.7045 0.4894 47 1 1.5733 6.3685 -0.5285 48 1 1.3127 4.5125 -0.0006 49 1 0.2173 2.3119 0.0005 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_6672420.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:10:08 Heat of formation + Delta-G solvation = -90.718681 kcal Electronic energy + Delta-G solvation = -38497.788209 eV Core-core repulsion = 32996.032743 eV Total energy + Delta-G solvation = -5501.755466 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.131 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -50.08983 -50.05054 -43.78331 -41.63278 -40.72795 -40.17725 -39.01891 -38.75145 -37.22116 -34.81610 -33.69066 -32.11403 -31.89693 -31.59985 -30.88648 -28.59566 -26.76367 -26.65916 -26.17169 -25.05468 -24.16321 -24.03741 -22.87773 -22.08524 -21.72683 -20.35154 -19.89842 -19.31361 -18.93688 -18.59451 -18.45435 -18.21571 -17.77076 -17.49354 -17.06353 -17.05733 -16.90826 -16.67814 -16.59226 -16.38464 -16.32660 -15.96661 -15.85626 -15.62168 -15.52626 -15.22860 -15.03081 -14.67925 -14.57094 -14.24113 -14.06599 -13.99723 -13.94901 -13.79779 -13.57992 -13.47145 -13.39580 -13.23130 -12.88483 -12.57328 -12.54991 -12.38848 -12.13357 -12.07588 -11.79739 -11.74377 -11.63212 -11.36052 -11.04388 -10.49140 -10.34767 -10.10659 -9.85782 -9.60979 -9.03149 -4.90604 -0.70271 -0.13628 -0.04003 0.06703 0.58354 1.14654 1.28740 1.61493 1.84119 1.84800 1.93565 2.11121 2.27374 2.33862 2.81465 3.12184 3.26777 3.35366 3.42486 3.47344 3.53320 3.59571 3.65091 3.69509 3.79394 3.83581 3.91523 3.92543 3.96460 4.05574 4.12189 4.15350 4.30919 4.35637 4.40569 4.42518 4.54456 4.66499 4.71825 4.74873 4.77137 4.80788 4.83018 4.83940 4.86598 4.90256 4.98069 5.01366 5.04534 5.07174 5.17481 5.22040 5.31150 5.45597 5.56707 5.71873 6.15038 6.25797 6.58134 6.77526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.332 6.332 3 C 0.137 3.863 4 C 0.022 3.978 5 O -0.181 6.181 6 C -0.035 4.035 7 C 0.608 3.392 8 O -0.539 6.539 9 N -0.690 5.690 10 C 0.111 3.889 11 H 0.107 0.893 12 C -0.135 4.135 13 C -0.075 4.075 14 H 0.096 0.904 15 C -0.111 4.111 16 C 0.114 3.886 17 F -0.139 7.139 18 C -0.199 4.199 19 C 0.108 3.892 20 F -0.142 7.142 21 C -0.153 4.153 22 C -0.054 4.054 23 C -0.123 4.123 24 C -0.109 4.109 25 C -0.098 4.098 26 C -0.064 4.064 27 C -0.092 4.092 28 O -0.557 6.557 29 Si 0.777 3.223 30 C -0.090 4.090 31 C -0.166 4.166 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.415 0.585 36 H 0.119 0.881 37 H 0.069 0.931 38 H 0.150 0.850 39 H 0.164 0.836 40 H 0.175 0.825 41 H 0.081 0.919 42 H 0.121 0.879 43 H 0.177 0.823 44 H 0.087 0.913 45 H 0.395 0.605 46 H -0.286 1.286 47 H -0.281 1.281 48 H 0.161 0.839 49 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.269 1.935 1.855 4.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.246 6.246 3 C 0.091 3.909 4 C -0.026 4.026 5 O -0.083 6.083 6 C -0.085 4.085 7 C 0.394 3.606 8 O -0.418 6.418 9 N -0.340 5.340 10 C 0.007 3.993 11 H 0.125 0.875 12 C -0.173 4.173 13 C -0.094 4.094 14 H 0.115 0.885 15 C -0.112 4.112 16 C 0.094 3.906 17 F -0.118 7.118 18 C -0.218 4.218 19 C 0.088 3.912 20 F -0.121 7.121 21 C -0.172 4.172 22 C -0.071 4.071 23 C -0.160 4.160 24 C -0.130 4.130 25 C -0.099 4.099 26 C -0.065 4.065 27 C -0.199 4.199 28 O -0.367 6.367 29 Si 0.680 3.320 30 C -0.108 4.108 31 C -0.184 4.184 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.134 0.866 35 H 0.252 0.748 36 H 0.137 0.863 37 H 0.087 0.913 38 H 0.168 0.832 39 H 0.182 0.818 40 H 0.193 0.807 41 H 0.100 0.900 42 H 0.139 0.861 43 H 0.194 0.806 44 H 0.105 0.895 45 H 0.245 0.755 46 H -0.213 1.213 47 H -0.208 1.208 48 H 0.178 0.822 49 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -3.169 1.926 1.508 4.003 hybrid contribution 0.064 -0.313 -0.710 0.778 sum -3.105 1.613 0.798 3.588 Atomic orbital electron populations 1.23489 0.75341 1.06034 1.03158 1.86145 1.24301 1.25707 1.88447 1.17957 0.86177 0.86786 0.99974 1.19166 0.88224 0.87093 1.08150 1.84013 1.12757 1.35005 1.76529 1.21978 0.84040 0.92771 1.09706 1.16583 0.84918 0.82648 0.76490 1.90887 1.31155 1.68130 1.51659 1.45577 1.10780 1.04860 1.72745 1.22060 0.85798 0.93159 0.98293 0.87456 1.23603 1.02599 0.94181 0.96935 1.21543 1.00010 0.89995 0.97827 0.88535 1.19947 0.94395 0.94563 1.02325 1.17354 0.77019 0.94345 1.01850 1.91504 1.29589 1.96600 1.94104 1.21155 0.94527 0.99132 1.06998 1.17571 0.90413 0.82472 1.00711 1.91525 1.84149 1.46229 1.90158 1.21534 1.02261 0.91637 1.01761 1.21089 0.92647 0.97978 0.95420 1.23446 1.04768 0.92511 0.95314 1.22857 0.95125 0.94491 1.00498 1.19602 0.92659 0.92698 1.04975 1.18659 0.93070 0.92301 1.02462 1.25136 1.06163 1.00649 0.87957 1.86570 1.77286 1.42567 1.30300 0.93965 0.76628 0.73840 0.87569 1.20837 0.93043 0.98783 0.98100 1.21344 1.01834 0.89509 1.05758 0.90374 0.90964 0.86572 0.74793 0.86270 0.91252 0.83247 0.81837 0.80750 0.90033 0.86083 0.80589 0.89505 0.75491 1.21298 1.20845 0.82225 0.80257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.08 9.81 113.37 1.11 1.04 16 2 O -0.33 -1.26 10.50 -93.15 -0.98 -2.24 16 3 C 0.14 0.65 6.70 22.57 0.15 0.80 16 4 C 0.02 0.19 7.35 23.14 0.17 0.36 16 5 O -0.18 -1.61 10.28 -13.43 -0.14 -1.75 16 6 C -0.03 -0.28 7.07 24.00 0.17 -0.11 16 7 C 0.61 4.36 7.80 86.54 0.67 5.04 16 8 O -0.54 -6.66 16.43 -4.20 -0.07 -6.73 16 9 N -0.69 -0.80 5.26 -443.71 -2.33 -3.13 16 10 C 0.11 -0.26 4.32 45.51 0.20 -0.06 16 11 H 0.11 -0.06 7.46 -2.38 -0.02 -0.08 16 12 C -0.13 0.58 7.25 31.12 0.23 0.80 16 13 C -0.08 0.28 3.78 -11.02 -0.04 0.24 16 14 H 0.10 -0.18 7.44 -2.38 -0.02 -0.19 16 15 C -0.11 0.22 5.30 -19.82 -0.10 0.12 16 16 C 0.11 0.24 7.24 22.37 0.16 0.40 16 17 F -0.14 -0.67 16.36 44.97 0.74 0.07 16 18 C -0.20 -0.43 10.01 22.36 0.22 -0.21 16 19 C 0.11 0.18 7.30 22.37 0.16 0.34 16 20 F -0.14 -0.67 17.27 44.97 0.78 0.11 16 21 C -0.15 0.48 10.03 22.32 0.22 0.71 16 22 C -0.05 0.29 8.61 22.26 0.19 0.48 16 23 C -0.12 0.69 7.29 31.12 0.23 0.92 16 24 C -0.11 -0.86 10.68 23.79 0.25 -0.61 16 25 C -0.10 -0.75 6.16 -20.24 -0.12 -0.88 16 26 C -0.06 -0.25 5.30 -19.87 -0.11 -0.35 16 27 C -0.09 -0.03 2.70 71.23 0.19 0.16 16 28 O -0.56 -1.84 12.86 -148.98 -1.92 -3.75 16 29 Si 0.78 -2.73 30.20 68.60 2.07 -0.66 16 30 C -0.09 0.00 8.62 22.02 0.19 0.19 16 31 C -0.17 0.13 9.03 22.40 0.20 0.33 16 32 H 0.08 -0.71 7.66 -2.39 -0.02 -0.72 16 33 H 0.07 -0.59 7.66 -2.39 -0.02 -0.60 16 34 H 0.12 -0.95 8.14 -2.38 -0.02 -0.97 16 35 H 0.42 -0.46 8.42 -92.71 -0.78 -1.24 16 36 H 0.12 -0.96 6.32 -2.38 -0.02 -0.98 16 37 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 38 H 0.15 0.13 8.06 -2.91 -0.02 0.10 16 39 H 0.16 -1.19 8.06 -2.91 -0.02 -1.21 16 40 H 0.18 -2.00 6.66 -2.91 -0.02 -2.02 16 41 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 42 H 0.12 -1.07 7.72 -2.39 -0.02 -1.08 16 43 H 0.18 1.04 8.06 -2.91 -0.02 1.01 16 44 H 0.09 -0.20 7.96 -2.39 -0.02 -0.21 16 45 H 0.39 -1.93 8.74 -74.06 -0.65 -2.58 16 46 H -0.29 -0.27 7.11 99.48 0.71 0.44 16 47 H -0.28 -0.35 6.75 99.48 0.67 0.32 16 48 H 0.16 -0.73 4.85 -2.91 -0.01 -0.74 16 49 H 0.18 -1.43 6.26 -2.91 -0.02 -1.45 16 Total: 0.00 -23.30 421.10 2.15 -21.15 By element: Atomic # 1 Polarization: -12.42 SS G_CDS: -0.35 Total: -12.77 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 4.35 Total: 9.70 kcal Atomic # 7 Polarization: -0.80 SS G_CDS: -2.33 Total: -3.13 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -3.10 Total: -14.47 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 1.51 Total: 0.18 kcal Atomic # 14 Polarization: -2.73 SS G_CDS: 2.07 Total: -0.66 kcal Total: -23.30 2.15 -21.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_6672420.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.566 kcal (2) G-P(sol) polarization free energy of solvation -23.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds