Wall clock time and date at job start Sun Mar 7 2021 00:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33823 * 122.45118 * 2 1 4 4 C 1.50698 * 124.51955 * 359.95403 * 3 2 1 5 5 O 1.42897 * 109.47501 * 113.27613 * 4 3 2 6 6 Si 1.86295 * 109.46908 * 233.27835 * 4 3 2 7 7 S 1.70617 * 110.95740 * 179.97438 * 3 2 1 8 8 C 1.75836 * 91.56104 * 0.02562 * 7 3 2 9 9 C 1.46580 * 125.45441 * 180.02562 * 8 7 3 10 10 O 1.21700 * 119.99982 * 180.02562 * 9 8 7 11 11 N 1.34783 * 120.00310 * 0.02562 * 9 8 7 12 12 C 1.46500 * 120.00208 * 180.02562 * 11 9 8 13 13 H 1.09004 * 112.84827 * 23.80736 * 12 11 9 14 14 C 1.53779 * 113.61152 * 155.00322 * 12 11 9 15 15 C 1.53779 * 87.08104 * 89.20217 * 14 12 11 16 16 H 1.08994 * 113.61384 * 270.79795 * 15 14 12 17 17 C 1.50695 * 113.61554 * 139.97583 * 15 14 12 18 18 C 1.38458 * 119.98666 * 120.27454 * 17 15 14 19 19 F 1.35104 * 120.01319 * 0.02814 * 18 17 15 20 20 C 1.38441 * 119.97285 * 180.30198 * 18 17 15 21 21 C 1.38392 * 119.95202 * 359.42647 * 20 18 17 22 22 F 1.35105 * 120.01601 * 180.25565 * 21 20 18 23 23 C 1.38493 * 119.97385 * 0.27664 * 21 20 18 24 24 C 1.38189 * 120.02598 * 0.02562 * 23 21 20 25 25 C 1.53775 * 113.69172 * 252.54179 * 12 11 9 26 26 C 1.36646 * 109.08705 * 0.26133 * 8 7 3 27 27 H 1.09003 * 109.46966 * 84.85339 * 1 2 3 28 28 H 1.09006 * 109.47183 * 204.84720 * 1 2 3 29 29 H 1.08992 * 109.47329 * 324.85008 * 1 2 3 30 30 H 1.09000 * 109.47079 * 353.27341 * 4 3 2 31 31 H 0.96699 * 113.99583 * 59.99692 * 5 4 3 32 32 H 1.48500 * 110.00403 * 58.68123 * 6 4 3 33 33 H 1.48507 * 110.00055 * 179.97438 * 6 4 3 34 34 H 0.97004 * 119.99462 * 0.02562 * 11 9 8 35 35 H 1.08999 * 113.61503 * 334.64750 * 14 12 11 36 36 H 1.09002 * 113.68581 * 203.76466 * 14 12 11 37 37 H 1.08005 * 120.02591 * 179.70327 * 20 18 17 38 38 H 1.08005 * 119.98714 * 180.02562 * 23 21 20 39 39 H 1.08004 * 119.97631 * 179.97438 * 24 23 21 40 40 H 1.08998 * 113.61583 * 156.32539 * 25 12 11 41 41 H 1.09001 * 113.61948 * 25.41618 * 25 12 11 42 42 H 1.08000 * 123.35207 * 179.73472 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1293 0.0000 4 6 1.6355 2.5161 -0.0010 5 8 1.9383 3.1634 1.2365 6 14 2.3601 3.4978 -1.4088 7 16 3.8970 0.7893 0.0007 8 6 3.5937 -0.9427 0.0002 9 6 4.6232 -1.9862 0.0010 10 8 4.3002 -3.1595 0.0001 11 7 5.9274 -1.6462 0.0028 12 6 6.9563 -2.6891 0.0030 13 1 6.5997 -3.6355 -0.4037 14 6 8.2986 -2.2302 -0.5905 15 6 8.6824 -1.7796 0.8288 16 1 8.3906 -0.7542 1.0553 17 6 10.1162 -2.0730 1.1883 18 6 10.9699 -1.0376 1.5293 19 9 10.5176 0.2354 1.5404 20 6 12.2886 -1.3068 1.8535 21 6 12.7490 -2.6119 1.8478 22 9 14.0343 -2.8766 2.1689 23 6 11.8916 -3.6466 1.5123 24 6 10.5771 -3.3761 1.1828 25 6 7.6895 -2.8334 1.3470 26 6 2.2447 -1.1601 -0.0063 27 1 -0.3633 0.0922 -1.0236 28 1 -0.3634 -0.9326 0.4318 29 1 -0.3633 0.8402 0.5916 30 1 0.5542 2.4512 -0.1221 31 1 2.8849 3.2558 1.4106 32 1 2.0795 2.8185 -2.6991 33 1 1.7863 4.8675 -1.4212 34 1 6.1848 -0.7109 0.0039 35 1 8.2042 -1.4075 -1.2993 36 1 8.9119 -3.0475 -0.9700 37 1 12.9565 -0.4993 2.1150 38 1 12.2506 -4.6652 1.5082 39 1 9.9094 -4.1836 0.9210 40 1 8.1353 -3.8166 1.4978 41 1 7.1034 -2.4976 2.2025 42 1 1.8020 -2.1452 -0.0121 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_6739946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:10:13 Heat of formation + Delta-G solvation = -69.102039 kcal Electronic energy + Delta-G solvation = -29185.168211 eV Core-core repulsion = 24667.319024 eV Total energy + Delta-G solvation = -4517.849187 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.089 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.04062 -50.01865 -41.61431 -40.47158 -39.68705 -38.65689 -37.56170 -34.72642 -32.56060 -31.84298 -31.36574 -29.87745 -27.27358 -26.71673 -25.85974 -24.53449 -24.07719 -22.85019 -22.01677 -20.49136 -20.01456 -19.57548 -19.23143 -18.20966 -17.88449 -17.44653 -17.29414 -17.02265 -16.83728 -16.60819 -16.35000 -16.25365 -16.11831 -15.74674 -15.49385 -15.39758 -15.21631 -14.95056 -14.76605 -14.36141 -14.23857 -13.99470 -13.77609 -13.55677 -13.47145 -13.43680 -13.18293 -13.03866 -12.83326 -12.54045 -12.45918 -12.27989 -12.03639 -11.96143 -11.73497 -11.34399 -11.27527 -10.78889 -10.26345 -10.07201 -9.71556 -9.57363 -9.43280 -5.18561 -0.70850 -0.10372 -0.00776 0.29903 0.68041 1.04478 1.24444 1.58414 1.87203 1.93156 2.02971 2.30470 2.84802 3.31096 3.34774 3.46461 3.50482 3.54307 3.61537 3.69021 3.70435 3.88347 3.95370 4.04624 4.09855 4.16077 4.19159 4.38825 4.43115 4.59745 4.67907 4.70347 4.75630 4.77346 4.84658 4.87541 4.91131 4.93541 4.93732 5.02345 5.09951 5.11484 5.23460 5.25900 5.33710 5.54149 5.74998 6.31352 6.58197 6.99654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.113 4.113 3 C -0.241 4.241 4 C -0.038 4.038 5 O -0.546 6.546 6 Si 0.759 3.241 7 S 0.276 5.724 8 C -0.285 4.285 9 C 0.594 3.406 10 O -0.567 6.567 11 N -0.698 5.698 12 C 0.113 3.887 13 H 0.098 0.902 14 C -0.123 4.123 15 C -0.073 4.073 16 H 0.105 0.895 17 C -0.111 4.111 18 C 0.118 3.882 19 F -0.136 7.136 20 C -0.198 4.198 21 C 0.106 3.894 22 F -0.143 7.143 23 C -0.156 4.156 24 C -0.056 4.056 25 C -0.139 4.139 26 C -0.058 4.058 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.125 0.875 31 H 0.394 0.606 32 H -0.282 1.282 33 H -0.276 1.276 34 H 0.411 0.589 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.151 0.849 38 H 0.161 0.839 39 H 0.172 0.828 40 H 0.112 0.888 41 H 0.068 0.932 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.361 1.794 -1.387 3.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.126 4.126 3 C -0.361 4.361 4 C -0.150 4.150 5 O -0.354 6.354 6 Si 0.661 3.339 7 S 0.546 5.454 8 C -0.405 4.405 9 C 0.382 3.618 10 O -0.448 6.448 11 N -0.349 5.349 12 C 0.008 3.992 13 H 0.116 0.884 14 C -0.160 4.160 15 C -0.091 4.091 16 H 0.123 0.877 17 C -0.112 4.112 18 C 0.098 3.902 19 F -0.114 7.114 20 C -0.218 4.218 21 C 0.087 3.913 22 F -0.122 7.122 23 C -0.174 4.174 24 C -0.073 4.073 25 C -0.177 4.177 26 C -0.092 4.092 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.143 0.857 31 H 0.244 0.756 32 H -0.208 1.208 33 H -0.202 1.202 34 H 0.247 0.753 35 H 0.106 0.894 36 H 0.134 0.866 37 H 0.168 0.832 38 H 0.179 0.821 39 H 0.189 0.811 40 H 0.130 0.870 41 H 0.087 0.913 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.738 2.388 -2.065 4.179 hybrid contribution -1.493 -0.599 0.439 1.667 sum 1.245 1.789 -1.627 2.719 Atomic orbital electron populations 1.20645 0.88610 1.03778 1.03093 1.18816 0.98831 0.90923 1.04040 1.24715 1.00168 1.00844 1.10357 1.24771 1.03953 0.89585 0.96687 1.86550 1.31517 1.79290 1.38033 0.94244 0.88730 0.76720 0.74162 1.82265 1.00923 0.95480 1.66727 1.24554 0.97691 0.98575 1.19711 1.17094 0.82377 0.87009 0.75348 1.90833 1.82266 1.19908 1.51746 1.45455 1.04287 1.10672 1.74450 1.21946 0.87270 0.91950 0.98015 0.88419 1.23439 0.94126 1.03054 0.95416 1.21561 0.89037 1.00792 0.97689 0.87689 1.19952 0.96312 0.92675 1.02255 1.17293 0.92034 0.79219 1.01620 1.91506 1.89225 1.36631 1.94052 1.21168 0.96234 0.97421 1.06973 1.17579 0.79290 0.93611 1.00803 1.91526 1.35693 1.94652 1.90293 1.21513 0.93957 0.99996 1.01963 1.21070 0.94650 0.96048 0.95564 1.23608 0.96593 1.00318 0.97200 1.20745 0.91437 1.00124 0.96856 0.90304 0.90580 0.90776 0.85738 0.75624 1.20837 1.20234 0.75253 0.89371 0.86643 0.83151 0.82139 0.81116 0.86959 0.91287 0.83491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.12 9.47 71.24 0.67 0.79 16 2 C -0.11 -0.16 5.78 -21.05 -0.12 -0.28 16 3 C -0.24 0.31 4.83 24.68 0.12 0.43 16 4 C -0.04 0.10 2.77 71.24 0.20 0.29 16 5 O -0.55 1.13 12.88 -148.98 -1.92 -0.79 16 6 Si 0.76 -2.86 32.13 68.60 2.20 -0.66 16 7 S 0.28 -1.40 20.83 -56.49 -1.18 -2.58 16 8 C -0.29 -0.59 6.45 24.07 0.16 -0.44 16 9 C 0.59 2.70 7.78 86.42 0.67 3.38 16 10 O -0.57 -7.21 16.44 -4.35 -0.07 -7.28 16 11 N -0.70 1.69 5.26 -444.10 -2.34 -0.65 16 12 C 0.11 -0.44 4.32 45.51 0.20 -0.25 16 13 H 0.10 -0.05 7.46 -2.39 -0.02 -0.07 16 14 C -0.12 0.99 7.29 31.12 0.23 1.21 16 15 C -0.07 0.46 3.78 -11.01 -0.04 0.42 16 16 H 0.10 -0.66 7.44 -2.39 -0.02 -0.68 16 17 C -0.11 0.44 5.29 -19.82 -0.10 0.33 16 18 C 0.12 -0.03 7.25 22.37 0.16 0.13 16 19 F -0.14 -0.18 16.36 44.97 0.74 0.56 16 20 C -0.20 -0.09 10.01 22.35 0.22 0.13 16 21 C 0.11 0.07 7.30 22.37 0.16 0.23 16 22 F -0.14 -0.56 17.27 44.97 0.78 0.22 16 23 C -0.16 0.60 10.02 22.32 0.22 0.82 16 24 C -0.06 0.35 8.61 22.26 0.19 0.54 16 25 C -0.14 0.78 7.25 31.12 0.23 1.00 16 26 C -0.06 -0.21 9.78 21.72 0.21 0.01 16 27 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 28 H 0.08 -0.14 8.11 -2.38 -0.02 -0.15 16 29 H 0.07 -0.12 7.00 -2.39 -0.02 -0.14 16 30 H 0.13 -0.25 6.25 -2.39 -0.01 -0.26 16 31 H 0.39 -4.03 8.70 -74.06 -0.64 -4.67 16 32 H -0.28 -0.59 7.11 99.48 0.71 0.12 16 33 H -0.28 -0.65 7.11 99.48 0.71 0.06 16 34 H 0.41 -3.03 7.82 -92.71 -0.72 -3.76 16 35 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 36 H 0.12 -1.17 7.72 -2.39 -0.02 -1.19 16 37 H 0.15 -0.15 8.06 -2.91 -0.02 -0.17 16 38 H 0.16 -1.21 8.06 -2.91 -0.02 -1.23 16 39 H 0.17 -2.00 6.66 -2.91 -0.02 -2.02 16 40 H 0.11 -0.93 6.31 -2.39 -0.02 -0.94 16 41 H 0.07 -0.21 8.14 -2.39 -0.02 -0.22 16 42 H 0.15 0.65 8.06 -2.91 -0.02 0.63 16 Total: 0.00 -19.51 375.43 1.37 -18.14 By element: Atomic # 1 Polarization: -15.51 SS G_CDS: -0.22 Total: -15.74 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 3.38 Total: 8.77 kcal Atomic # 7 Polarization: 1.69 SS G_CDS: -2.34 Total: -0.65 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -1.99 Total: -8.07 kcal Atomic # 9 Polarization: -0.74 SS G_CDS: 1.51 Total: 0.78 kcal Atomic # 14 Polarization: -2.86 SS G_CDS: 2.20 Total: -0.66 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -1.18 Total: -2.58 kcal Total: -19.51 1.37 -18.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_6739946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.960 kcal (2) G-P(sol) polarization free energy of solvation -19.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds