Wall clock time and date at job start Sun Mar 7 2021 00:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86303 * 109.46792 * 2 1 4 4 C 1.50699 * 109.47344 * 239.99716 * 2 1 3 5 5 C 1.32767 * 124.71341 * 300.00135 * 4 2 1 6 6 C 1.44424 * 113.08579 * 180.02562 * 5 4 2 7 7 C 1.47191 * 123.46513 * 180.02562 * 6 5 4 8 8 O 1.21633 * 119.99778 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00343 * 180.02562 * 7 6 5 10 10 C 1.46494 * 120.00034 * 180.02562 * 9 7 6 11 11 H 1.08993 * 112.85527 * 23.79492 * 10 9 7 12 12 C 1.53783 * 113.61637 * 154.99917 * 10 9 7 13 13 C 1.53784 * 87.08037 * 89.19453 * 12 10 9 14 14 H 1.08997 * 113.61486 * 270.79745 * 13 12 10 15 15 C 1.50703 * 113.60894 * 139.98202 * 13 12 10 16 16 C 1.38185 * 119.98980 * 301.52522 * 15 13 12 17 17 C 1.38232 * 120.04918 * 180.02562 * 16 15 13 18 18 C 1.38447 * 120.02761 * 359.97438 * 17 16 15 19 19 F 1.35095 * 120.01281 * 180.02562 * 18 17 16 20 20 C 1.38445 * 119.97471 * 0.02562 * 18 17 16 21 21 C 1.38398 * 119.94690 * 0.28137 * 20 18 17 22 22 F 1.35104 * 120.00972 * 179.71479 * 21 20 18 23 23 C 1.53773 * 87.17271 * 25.39246 * 13 12 10 24 24 C 1.36011 * 113.07672 * 0.26380 * 6 5 4 25 25 S 1.70451 * 110.81589 * 359.59348 * 24 6 5 26 26 H 0.96699 * 114.00150 * 60.00783 * 1 2 3 27 27 H 1.08999 * 109.46901 * 119.99596 * 2 1 3 28 28 H 1.48494 * 110.00198 * 59.99714 * 3 2 1 29 29 H 1.48502 * 109.99636 * 181.31948 * 3 2 1 30 30 H 1.08001 * 123.45973 * 0.02562 * 5 4 2 31 31 H 0.97008 * 119.99537 * 359.97438 * 9 7 6 32 32 H 1.08995 * 113.61269 * 334.64635 * 12 10 9 33 33 H 1.09000 * 113.61321 * 203.74472 * 12 10 9 34 34 H 1.08001 * 119.97637 * 0.02562 * 16 15 13 35 35 H 1.08001 * 119.98496 * 180.02562 * 17 16 15 36 36 H 1.08002 * 120.02257 * 179.97438 * 20 18 17 37 37 H 1.09003 * 113.61674 * 89.15527 * 23 13 12 38 38 H 1.08997 * 113.61318 * 220.05569 * 23 13 12 39 39 H 1.08000 * 124.59106 * 179.71253 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.6689 -1.9763 -1.5326 6 6 2.2782 -2.4008 -2.7713 7 6 2.1355 -3.7581 -3.3227 8 8 1.4768 -4.5899 -2.7281 9 7 2.7357 -4.0795 -4.4859 10 6 2.5931 -5.4302 -5.0349 11 1 1.6973 -5.9393 -4.6795 12 6 2.7758 -5.4976 -6.5603 13 6 4.2753 -5.7092 -6.2924 14 1 4.8428 -4.7808 -6.2291 15 6 4.9140 -6.7245 -7.2048 16 6 4.4334 -8.0195 -7.2411 17 6 5.0187 -8.9519 -8.0772 18 6 6.0869 -8.5889 -8.8796 19 9 6.6584 -9.5003 -9.6969 20 6 6.5693 -7.2918 -8.8440 21 6 5.9866 -6.3608 -8.0019 22 9 6.4601 -5.0960 -7.9620 23 6 3.8723 -6.2796 -4.9225 24 6 3.0017 -1.4191 -3.3735 25 16 2.9451 0.0205 -2.4625 26 1 -0.3933 0.4416 -0.7651 27 1 1.7923 -0.5138 0.8900 28 1 1.5613 2.4679 1.2084 29 1 3.5345 1.7703 -0.0321 30 1 1.0621 -2.6224 -0.9156 31 1 3.2613 -3.4162 -4.9599 32 1 2.5512 -4.5601 -7.0688 33 1 2.2889 -6.3573 -7.0208 34 1 3.5998 -8.3035 -6.6159 35 1 4.6419 -9.9637 -8.1050 36 1 7.4029 -7.0079 -9.4693 37 1 3.6857 -7.3535 -4.9343 38 1 4.5315 -5.9725 -4.1106 39 1 3.5377 -1.5353 -4.3039 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13428180_6894386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:10:18 Heat of formation + Delta-G solvation = -68.882614 kcal Electronic energy + Delta-G solvation = -27043.928521 eV Core-core repulsion = 22681.626468 eV Total energy + Delta-G solvation = -4362.302053 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.073 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.08164 -50.01906 -41.69950 -40.46287 -39.12893 -38.50000 -37.07735 -34.67441 -32.17969 -31.87615 -31.21074 -27.04073 -26.92365 -26.74079 -25.42265 -24.29079 -22.99000 -22.19869 -20.60309 -20.44461 -19.37383 -18.95067 -18.34306 -18.16398 -17.65619 -17.30819 -17.05495 -16.91929 -16.61152 -16.35489 -16.33328 -15.93928 -15.78988 -15.53875 -15.39196 -15.31966 -14.89915 -14.47770 -14.17222 -14.14919 -13.91409 -13.73767 -13.67951 -13.59050 -13.50423 -12.89551 -12.71502 -12.66824 -12.28738 -12.20447 -11.94894 -11.86462 -11.46389 -10.95035 -10.65858 -10.23605 -10.16070 -10.03895 -9.67153 -9.54958 -5.23592 -0.41357 -0.20108 -0.12633 0.28775 0.64148 0.86770 1.14902 1.51768 1.83484 1.99007 2.18024 2.30465 2.76006 3.16412 3.28493 3.33655 3.37015 3.47747 3.52497 3.54126 3.70686 3.77518 3.78730 3.90546 3.91294 4.05036 4.22861 4.36876 4.44987 4.51810 4.60368 4.66002 4.66903 4.70696 4.75516 4.81265 4.84939 4.92904 4.94658 5.02004 5.13072 5.18951 5.46603 5.63386 6.37754 6.43691 7.15419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.533 6.533 2 C -0.026 4.026 3 Si 0.653 3.347 4 C -0.244 4.244 5 C -0.053 4.053 6 C -0.156 4.156 7 C 0.582 3.418 8 O -0.528 6.528 9 N -0.710 5.710 10 C 0.122 3.878 11 H 0.110 0.890 12 C -0.134 4.134 13 C -0.075 4.075 14 H 0.103 0.897 15 C -0.115 4.115 16 C -0.060 4.060 17 C -0.159 4.159 18 C 0.128 3.872 19 F -0.130 7.130 20 C -0.190 4.190 21 C 0.133 3.867 22 F -0.129 7.129 23 C -0.142 4.142 24 C -0.206 4.206 25 S 0.198 5.802 26 H 0.381 0.619 27 H 0.124 0.876 28 H -0.232 1.232 29 H -0.236 1.236 30 H 0.157 0.843 31 H 0.400 0.600 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.137 3.252 -3.034 4.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.139 4.139 3 Si 0.553 3.447 4 C -0.360 4.360 5 C -0.082 4.082 6 C -0.174 4.174 7 C 0.368 3.632 8 O -0.405 6.405 9 N -0.361 5.361 10 C 0.016 3.984 11 H 0.128 0.872 12 C -0.172 4.172 13 C -0.094 4.094 14 H 0.121 0.879 15 C -0.116 4.116 16 C -0.078 4.078 17 C -0.178 4.178 18 C 0.108 3.892 19 F -0.108 7.108 20 C -0.209 4.209 21 C 0.114 3.886 22 F -0.107 7.107 23 C -0.181 4.181 24 C -0.344 4.344 25 S 0.465 5.535 26 H 0.229 0.771 27 H 0.141 0.859 28 H -0.155 1.155 29 H -0.160 1.160 30 H 0.174 0.826 31 H 0.235 0.765 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.167 0.833 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.894 4.407 -1.833 4.856 hybrid contribution 0.229 -1.742 -0.397 1.801 sum 1.123 2.665 -2.229 3.652 Atomic orbital electron populations 1.86543 1.16522 1.81670 1.49139 1.24445 0.85294 1.09059 0.95102 0.95108 0.82075 0.77514 0.90027 1.24809 1.08633 0.99179 1.03427 1.21044 0.98139 0.94369 0.94629 1.20226 1.04455 0.94677 0.98071 1.17602 0.78726 0.86566 0.80327 1.90829 1.40032 1.50395 1.59256 1.45505 1.53489 1.13388 1.23768 1.21866 0.99570 0.83114 0.93820 0.87188 1.23451 0.94462 1.03841 0.95473 1.21561 0.95840 0.97491 0.94485 0.87919 1.19799 0.96421 0.96119 0.99247 1.20775 0.99047 0.90942 0.97004 1.21262 0.96719 1.01894 0.97895 1.17339 0.93933 0.86233 0.91687 1.91560 1.83596 1.65493 1.70182 1.21083 1.04224 0.92433 1.03210 1.17142 0.94465 0.79580 0.97460 1.91526 1.87401 1.36613 1.95207 1.23619 0.97578 1.00666 0.96243 1.25799 1.04336 0.99013 1.05266 1.83114 1.46651 1.11207 1.12577 0.77129 0.85854 1.15490 1.16039 0.82552 0.76519 0.90176 0.87985 0.83660 0.83725 0.83302 0.88362 0.90361 0.81163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.08 12.85 -35.23 -0.45 -0.37 16 2 C -0.03 0.02 2.95 36.00 0.11 0.13 16 3 Si 0.65 -1.17 30.91 -169.99 -5.25 -6.42 16 4 C -0.24 0.10 5.68 -36.18 -0.21 -0.10 16 5 C -0.05 -0.07 9.91 -39.02 -0.39 -0.46 16 6 C -0.16 -0.11 5.98 -104.63 -0.63 -0.73 16 7 C 0.58 1.20 7.79 -12.63 -0.10 1.10 16 8 O -0.53 -3.17 16.40 5.25 0.09 -3.08 16 9 N -0.71 0.79 5.23 -54.08 -0.28 0.51 16 10 C 0.12 -0.18 4.33 -67.03 -0.29 -0.47 16 11 H 0.11 0.01 7.46 -51.93 -0.39 -0.38 16 12 C -0.13 0.41 7.29 -25.92 -0.19 0.22 16 13 C -0.08 0.18 3.79 -90.96 -0.34 -0.17 16 14 H 0.10 -0.24 7.42 -51.93 -0.39 -0.62 16 15 C -0.11 0.14 5.30 -104.54 -0.55 -0.42 16 16 C -0.06 0.13 8.53 -39.60 -0.34 -0.21 16 17 C -0.16 0.20 10.02 -39.51 -0.40 -0.20 16 18 C 0.13 0.05 7.30 -39.43 -0.29 -0.24 16 19 F -0.13 -0.23 17.27 2.25 0.04 -0.19 16 20 C -0.19 -0.04 10.01 -39.45 -0.39 -0.43 16 21 C 0.13 0.03 7.24 -39.43 -0.29 -0.26 16 22 F -0.13 -0.13 16.35 2.25 0.04 -0.09 16 23 C -0.14 0.29 7.27 -25.83 -0.19 0.10 16 24 C -0.21 0.39 10.38 29.93 0.31 0.70 16 25 S 0.20 -0.41 20.18 -107.50 -2.17 -2.58 16 26 H 0.38 -1.55 8.70 45.56 0.40 -1.15 16 27 H 0.12 -0.06 7.96 -51.93 -0.41 -0.47 16 28 H -0.23 -0.25 7.11 56.52 0.40 0.15 16 29 H -0.24 -0.01 7.11 56.52 0.40 0.39 16 30 H 0.16 0.37 8.06 -52.49 -0.42 -0.06 16 31 H 0.40 -1.43 7.20 -40.82 -0.29 -1.73 16 32 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 33 H 0.10 -0.38 7.64 -51.93 -0.40 -0.77 16 34 H 0.15 -0.62 6.72 -52.49 -0.35 -0.97 16 35 H 0.14 -0.42 8.06 -52.49 -0.42 -0.84 16 36 H 0.15 -0.12 8.06 -52.49 -0.42 -0.55 16 37 H 0.10 -0.29 6.39 -51.93 -0.33 -0.62 16 38 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 39 H 0.17 -0.81 7.01 -52.49 -0.37 -1.18 16 LS Contribution 354.13 15.07 5.34 5.34 Total: 0.00 -7.65 354.13 -10.67 -18.32 By element: Atomic # 1 Polarization: -6.13 SS G_CDS: -3.84 Total: -9.98 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -4.17 Total: -1.44 kcal Atomic # 7 Polarization: 0.79 SS G_CDS: -0.28 Total: 0.51 kcal Atomic # 8 Polarization: -3.09 SS G_CDS: -0.37 Total: -3.45 kcal Atomic # 9 Polarization: -0.36 SS G_CDS: 0.08 Total: -0.28 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: -5.25 Total: -6.42 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -2.17 Total: -2.58 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -7.65 -10.67 -18.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_6894386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.565 kcal (2) G-P(sol) polarization free energy of solvation -7.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds